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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025044 ID=TCONS_00025044|Name=TCONS_00025044|organism=Clytia hemisphaerica|type=transcript|length=2431bpRun BLAST on NCBI transcript from alignment at sc0000517:152809..176736+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025044 ID=TCONS_00025044|Name=TCONS_00025044|organism=Clytia hemisphaerica|type=transcript|length=23928bp|location=Sequence derived from alignment at sc0000517:152809..176736+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025044 vs. Swiss-Prot (Human)
Match: REV3L (DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 291/480 (60.62%), Postives = 370/480 (77.08%), Query Frame = 1
Query: 1 LNLPLKVLNKLSKDKLMHVSPNGVGFVTANVKRGILPRMLEDILNTRIMVKGAMKKAKEDKVLHRMLDSRQLGLKLIANVTYGYTSANFSGRMPCIEIGDSVVRKARETLERAIHLVNTTAKWNAKVVYGDTDSMFILVKGATKERAFEIGQQIVNEVTAANPKPVKLKFEKVYQPCVLITKKRYVGYSYETLDQNEPIFDAKGIETVLRDNCPAVEKLMEKSIRILFETKDVSLIKSYVQKQLMKILEGKTYLKEFIIAKEYRDMNTYKPGACVPALVLTRKMLKQDRRSEPRTGQRVPYVVIHGSPGLPLIQLVRPPQDLVDNSGLRINDVYYITKQILPALSRIFSLLGVNVNKWYTDLPKMNRIHDRDIDHSTNKKGTISHYFGSQHCPICQQLTTLRICRSCQQQPQMTVVHLTSRIWNTEKRFINLLKICQHCMQCTTQDVQCTSLDCPVFYKLSENKKDMKYTNVLRSLMDEL 1440
L +P +L ++ D + VSPNGV FV +V++G+LPRMLE+IL TR MVK +MK K+D+ L RMLD+RQLGLKLIANVT+GYTSANFSGRMPCIE+GDS+V KARETLERAI LVN T KW A+VVYGDTDSMF+L+KGATKE++F+IGQ+I VTA NPKPVKLKFEKVY PCVL TKKRYVGY YETLDQ +P+FDAKGIETV RD+CPAV K++E+S+++LFET+D+SLIK YVQ+Q MK+LEGK +++FI AKEYR +YKPGACVPAL LTRKML DRRSEP+ G+RVPYV+I+G+PG+PLIQLVR P +++ + LR+N YYITKQILP L+RIFSL+G++V WY +LP++++ +KGTIS YF + HCP+C LT IC C+ QPQ V L I E++ L+KIC++C C + + C SL+CPV +KLS +++ LR L+D+
Sbjct: 2653 LRVPPDLLYQVRHD--ITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEYRGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHGICSKCRSQPQHVAVILNQEIRELERQQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLDQF 3130 The following BLAST results are available for this feature:
BLAST of TCONS_00025044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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