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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025078 ID=TCONS_00025078|Name=TCONS_00025078|organism=Clytia hemisphaerica|type=transcript|length=1108bp
CCATATCATTGGAGTTATCTCACTGGTTGGATCATTGACTGCCATACTAA
CTTTGATAACCTTCATAATCAAAAGAAACACACCTATTGTTACGACATCA
GATTTCAAAGTTTCAACTTTGCATATATCTATTCAGGTAGTAACAATGAT
CATCACCCCCTTTTTATACTTTATGAATCATATTTGCATTTGGAAACCAT
TAGTTTTCACCACCTTATACACCCTCAACATTGGCATTGTTTTCACCAAG
TCACAAAAGCTTCTACAAGCATTTCTTTGCAAGGTAAAACTTACAGCCGA
GGAAGCCAAACGCACAGTAATGGCTCAGATTTTGACTGTTGTCATTTTTC
TAGTCTCCGTCAACGCTGTATACTTCGTCTGCCTTTATCAACAACAAGTA
ACCATTCTTGAATTCGAGGATCCTCAGGGAATGACAAGAGAGTATGTATG
CAATACCTATTTTCACAGCAATGCTATAATGATCGTAATTGCAGTAATCC
AACTAATGTGCACGATACAAGCTTTTCGAGGACGACATCTTCCGAGTGTC
ATGAACGACGGTGTCGTTTTGATGTTTACCACACTCATATTGACCGCTTC
ATTTGTTGTTTGCTTCACCATCGTTCCTTTTCAAAGGCCAATCGAGAAAG
AAATTTCACAATGTATCGCGATTTTGGTCAATACCATGGTCATCACATTC
CTCATGTACGGACAAAAGGCGTACCGTATTCTGTTTCATCCGGAACAAAA
CACAAGAGCGTATTTCCGCAATCAGTGTTTGACAGAGATGAGGCAAGACA
TCAATCAAAGAATCGAGATGAGATAGTGAATATGTTAGTTATGAAACACT
TAAGTATTATTTAATTACTAGAACATTGTGTCGTGTAAAGGGACTGATTT
GACTTAAAAAAGATTGATTGAACGAAAATCACTTGCGAACTCCTGAGAGC
CGAAATTCTATCAGAACCGCACCCTATTTTGAGAATATCTACCAATCAGA
TTCAAGAAGTGAAGACCCATTGTTGTTATAAACCAATCCGATCCAAACAC
ACACCTAGCACGAACAATAACTATTATCTACACTTATTGTAATATTAATT
AGCAGAAC Run BLAST on NCBI protein sequence of TCONS_00025078-protein >TCONS_00025078-protein ID=TCONS_00025078-protein|Name=TCONS_00025078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
HIIGVISLVGSLTAILTLITFIIKRNTPIVTTSDFKVSTLHISIQVVTMI
ITPFLYFMNHICIWKPLVFTTLYTLNIGIVFTKSQKLLQAFLCKVKLTAE
EAKRTVMAQILTVVIFLVSVNAVYFVCLYQQQVTILEFEDPQGMTREYVC
NTYFHSNAIMIVIAVIQLMCTIQAFRGRHLPSVMNDGVVLMFTTLILTAS
FVVCFTIVPFQRPIEKEISQCIAILVNTMVITFLMYGQKAYRILFHPEQN
TRAYFRNQCLTEMRQDINQRIEMR Run BLAST on NCBI transcript from alignment at sc0000520:68460..69567 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025078 ID=TCONS_00025078|Name=TCONS_00025078|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at sc0000520:68460..69567 (Clytia hemisphaerica)
GTTCTGCTAATTAATATTACAATAAGTGTAGATAATAGTTATTGTTCGTG
CTAGGTGTGTGTTTGGATCGGATTGGTTTATAACAACAATGGGTCTTCAC
TTCTTGAATCTGATTGGTAGATATTCTCAAAATAGGGTGCGGTTCTGATA
GAATTTCGGCTCTCAGGAGTTCGCAAGTGATTTTCGTTCAATCAATCTTT
TTTAAGTCAAATCAGTCCCTTTACACGACACAATGTTCTAGTAATTAAAT
AATACTTAAGTGTTTCATAACTAACATATTCACTATCTCATCTCGATTCT
TTGATTGATGTCTTGCCTCATCTCTGTCAAACACTGATTGCGGAAATACG
CTCTTGTGTTTTGTTCCGGATGAAACAGAATACGGTACGCCTTTTGTCCG
TACATGAGGAATGTGATGACCATGGTATTGACCAAAATCGCGATACATTG
TGAAATTTCTTTCTCGATTGGCCTTTGAAAAGGAACGATGGTGAAGCAAA
CAACAAATGAAGCGGTCAATATGAGTGTGGTAAACATCAAAACGACACCG
TCGTTCATGACACTCGGAAGATGTCGTCCTCGAAAAGCTTGTATCGTGCA
CATTAGTTGGATTACTGCAATTACGATCATTATAGCATTGCTGTGAAAAT
AGGTATTGCATACATACTCTCTTGTCATTCCCTGAGGATCCTCGAATTCA
AGAATGGTTACTTGTTGTTGATAAAGGCAGACGAAGTATACAGCGTTGAC
GGAGACTAGAAAAATGACAACAGTCAAAATCTGAGCCATTACTGTGCGTT
TGGCTTCCTCGGCTGTAAGTTTTACCTTGCAAAGAAATGCTTGTAGAAGC
TTTTGTGACTTGGTGAAAACAATGCCAATGTTGAGGGTGTATAAGGTGGT
GAAAACTAATGGTTTCCAAATGCAAATATGATTCATAAAGTATAAAAAGG
GGGTGATGATCATTGTTACTACCTGAATAGATATATGCAAAGTTGAAACT
TTGAAATCTGATGTCGTAACAATAGGTGTGTTTCTTTTGATTATGAAGGT
TATCAAAGTTAGTATGGCAGTCAATGATCCAACCAGTGAGATAACTCCAA
TGATATGG Coding sequence (CDS) from alignment at sc0000520:68460..69567 >TCONS_00025078 ID=TCONS_00025078|Name=TCONS_00025078|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0000520:68460..69567 (Clytia hemisphaerica)
CTATCTCATCTCGATTCTTTGATTGATGTCTTGCCTCATCTCTGTCAAAC
ACTGATTGCGGAAATACGCTCTTGTGTTTTGTTCCGGATGAAACAGAATA
CGGTACGCCTTTTGTCCGTACATGAGGAATGTGATGACCATGGTATTGAC
CAAAATCGCGATACATTGTGAAATTTCTTTCTCGATTGGCCTTTGAAAAG
GAACGATGGTGAAGCAAACAACAAATGAAGCGGTCAATATGAGTGTGGTA
AACATCAAAACGACACCGTCGTTCATGACACTCGGAAGATGTCGTCCTCG
AAAAGCTTGTATCGTGCACATTAGTTGGATTACTGCAATTACGATCATTA
TAGCATTGCTGTGAAAATAGGTATTGCATACATACTCTCTTGTCATTCCC
TGAGGATCCTCGAATTCAAGAATGGTTACTTGTTGTTGATAAAGGCAGAC
GAAGTATACAGCGTTGACGGAGACTAGAAAAATGACAACAGTCAAAATCT
GAGCCATTACTGTGCGTTTGGCTTCCTCGGCTGTAAGTTTTACCTTGCAA
AGAAATGCTTGTAGAAGCTTTTGTGACTTGGTGAAAACAATGCCAATGTT
GAGGGTGTATAAGGTGGTGAAAACTAATGGTTTCCAAATGCAAATATGAT
TCATAAAGTATAAAAAGGGGGTGATGATCATTGTTACTACCTGAATAGAT
ATATGCAAAGTTGAAACTTTGAAATCTGATGTCGTAACAATAGGTGTGTT
TCTTTTGATTATGAAGGTTATCAAAGTTAGTATGGCAGTCAATGATCCAA
CCAGTGAGATAACTCCAATGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025078-exon-sc0000520-1491911889:68460..69567 | TCONS_00025078-exon-sc0000520-1491911889:68460..69567 | Clytia hemisphaerica | exon |
| TCONS_00025078-exon-sc0000520-1510915933:68460..69567 | TCONS_00025078-exon-sc0000520-1510915933:68460..69567 | Clytia hemisphaerica | exon |
| TCONS_00025078-exon-sc0000520-1575043694:68460..69567 | TCONS_00025078-exon-sc0000520-1575043694:68460..69567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000520 | supercontig | sc0000520:68460..69567 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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