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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025081 ID=TCONS_00025081|Name=TCONS_00025081|organism=Clytia hemisphaerica|type=transcript|length=905bp
aagggactaaggaatttcttcgaattagagaaagatccgaattacagaga
gaatttAACACTACTTTCCAGCTAAAGGAACCAATTGTGGTATATCCCCT
GGTATGCATACACGTCATTCTGTggtgctttttgaaaatgtgttcgAAAT
ATGCAAAGATAAGAAAACTAGAGAATAGATCAGTTcataaagtttgactt
atagTGCTTCCTTCTTAGAGATTAAGCTTACCTTAATaagataaagaaag
aaaaaatcctTTTCTCCCAATTTGATATCTTCTTGAAATTATTCCTTAAT
TTACATCCATTGCCATAATCATATCTTATATATTATATCTTTCTCTAATT
TACAGCTCTATGTCCATCCTAAGATGATAAAACTACAATACTCTGTTACA
ATTCCAAAAACCTCAGTTGAAATACATGTTAGCTTAAGTGTTTCATAACT
AACATATTCACTATCTCACCTCGATTCTTTGATTGACGTCTTGCCTCATC
TCTGTCAAACACTGATTGCGGAAATACGCTCTTGTGTTTTGTTCCGGATG
AAACAGAATACGGTACGCCTTTTGTCCGTACATGAGGAATGTGATGACCA
TGGTATTGACCAAAATCGCGATACATTGTGAAATTTCTTTCTCGATTGGC
CTTTGAAAAGGAACGATGGTGAAGCAAACAACAAATGAAGCGGTCAATAT
GAGTGTGGTAAACATCAAAACGACACCGTCGTTCATGACACTCGGAAGAT
GTCGTCCTCGAAAAGCTTGTATCGTGCACATTAGTTGGATTACTGCAATT
GCGATCATTATAACATTGCTGTGAAAATAGGTATTGCATACATACTCTCT
TGTCATTCCCTGAGGATCTTCGAATTCAAGAATGGTTACTTGTTGTTGAT
AAAGG Run BLAST on NCBI protein sequence of TCONS_00025081-protein >TCONS_00025081-protein ID=TCONS_00025081-protein|Name=TCONS_00025081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
LYQQQVTILEFEDPQGMTREYVCNTYFHSNVIMIAIAVIQLMCTIQAFRG
RHLPSVMNDGVVLMFTTLILTASFVVCFTIVPFQRPIEKEISQCIAILVN
TMVITFLMYGQKAYRILFHPEQNTRAYFRNQCLTEMRQDVNQRIEVR Run BLAST on NCBI transcript from alignment at sc0000520:89629..90533 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025081 ID=TCONS_00025081|Name=TCONS_00025081|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at sc0000520:89629..90533 (Clytia hemisphaerica)
CCTTTATCAACAACAAGTAACCATTCTTGAATTCGAAGATCCTCAGGGAA
TGACAAGAGAGTATGTATGCAATACCTATTTTCACAGCAATGTTATAATG
ATCGCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGG
ACGACATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCA
CACTCATATTGACCGCTTCATTTGTTGTTTGCTTCACCATCGTTCCTTTT
CAAAGGCCAATCGAGAAAGAAATTTCACAATGTATCGCGATTTTGGTCAA
TACCATGGTCATCACATTCCTCATGTACGGACAAAAGGCGTACCGTATTC
TGTTTCATCCGGAACAAAACACAAGAGCGTATTTCCGCAATCAGTGTTTG
ACAGAGATGAGGCAAGACGTCAATCAAAGAATCGAGGTGAGATAGTGAAT
ATGTTAGTTATGAAACACTTAAGCTAACATGTATTTCAACTGAGGTTTTT
GGAATTGTAACAGAGTATTGTAGTTTTATCATCTTAGGATGGACATAGAG
CTGTAAATTAGAGAAAGATATAATATATAAGATATGATTATGGCAATGGA
TGTAAATTAAGGAATAATTTCAAGAAGATATCAAATTGGGAGAAAaggat
tttttctttctttatcttATTAAGGTAAGCTTAATCTCTAAGAAGGAAGC
ActataagtcaaactttatgAACTGATCTATTCTCTAGTTTTCTTATCTT
TGCATATTTcgaacacattttcaaaaagcaccACAGAATGACGTGTATGC
ATACCAGGGGATATACCACAATTGGTTCCTTTAGCTGGAAAGTAGTGTTa
aattctctctgtaattcggatctttctctaattcgaagaaattccttagt
ccctt Coding sequence (CDS) from alignment at sc0000520:89629..90533 >TCONS_00025081 ID=TCONS_00025081|Name=TCONS_00025081|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000520:89629..90533 (Clytia hemisphaerica)
CTTTATCAACAACAAGTAACCATTCTTGAATTCGAAGATCCTCAGGGAAT
GACAAGAGAGTATGTATGCAATACCTATTTTCACAGCAATGTTATAATGA
TCGCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGA
CGACATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCAC
ACTCATATTGACCGCTTCATTTGTTGTTTGCTTCACCATCGTTCCTTTTC
AAAGGCCAATCGAGAAAGAAATTTCACAATGTATCGCGATTTTGGTCAAT
ACCATGGTCATCACATTCCTCATGTACGGACAAAAGGCGTACCGTATTCT
GTTTCATCCGGAACAAAACACAAGAGCGTATTTCCGCAATCAGTGTTTGA
CAGAGATGAGGCAAGACGTCAATCAAAGAATCGAGGTGAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025081-exon-sc0000520-1491911889:89629..90533 | TCONS_00025081-exon-sc0000520-1491911889:89629..90533 | Clytia hemisphaerica | exon |
| TCONS_00025081-exon-sc0000520-1510915933:89629..90533 | TCONS_00025081-exon-sc0000520-1510915933:89629..90533 | Clytia hemisphaerica | exon |
| TCONS_00025081-exon-sc0000520-1575043694:89629..90533 | TCONS_00025081-exon-sc0000520-1575043694:89629..90533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000520 | supercontig | sc0000520:89629..90533 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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