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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025083 ID=TCONS_00025083|Name=TCONS_00025083|organism=Clytia hemisphaerica|type=transcript|length=1753bp
TctgcttcttcatttttcattgactGTAAACCTTGTGTAGCCTTTTCAAC
AGCTCTGCATATATTCACTGCTTTCTCGAGAGTAAGTTTTTCTTCAGCTA
GTAACTTTTTTCGAACGATATCGCTTTGAATACCAGCAACGATCCTGTCT
CTCAACAAACCAGGATAGCATGTATCACAATAATTGCAGTTCCTGCTCAA
GAGTTTCACTTCGGTTAAGAAGTCATCAAACGATTCACCTTCTTCTTGTT
TTCTTGAATTAAACACATGTCGTTCTAAAGTTTCGTTTCTAGTCCTTTAg
caaattctttcattttcgcCTTAATCGTGTCCGAActtttcttctcttct
tcactCAGGCTCAGTGATTCGTAAATGTTTCGTGTTTCTTCAGTAAACGT
ATATCGAAGCATGGCTGCTTGATATTCTGCTGGTTTTCTGTTTAGTTTAG
TTAGCAGCACATAGTCTTGCTATTTCGCCTGCCAGGCCTGAAATGCAGCG
AACCTGTCCACCGACAGGTCTAATCTCGGCGGTTTTATAGCTTTTTCTGC
CATTTCAAATGTTGATTATGAGGATATTTTCAGattgtattttcttttcc
tttccacTCTAGTTGTTCCTACTAGCAGCGCCATGTTTGATTCTAAGATA
ACATACTAAAGTACCGGCGCCGACTATAAGATACAAAGCCGACCTTACGG
TACCGACTATAATATAGACTAGGATCCTAACACCAACCCTCGCAAACGTT
ATCATGACTGAACTTGAAAAACATGTTGTCACAAAGCTTTTCAATGATGA
TATCATCAAATTTTACATTAGATTCGTTGATGATACCCTAGTCCTTGCTA
AACCTACTGCCTTTGATTCAATCCTCGAAAAACTTAACaataatttaaca
aaaaaagtttacaaTGGATACTTTGACGACGGAAACGTTCATTTCCTTGA
TATTAAGATTGACGGAACTGAAACCGATGTTTATTTCAAACCAACACACA
CAGGCCAGTATAGTTATTTTACCAGCCAATCTCCCTGGAGGTTGAAAACA
GCTTGGGCTAGATCTTTATTCAATCGTGCATCTAAAATCTGCTCGTCACA
ACACGCTCTCAATGGTCAGATCAGAAAACTGAAGCAATTCTTATCTTGGA
ATGGGTATCCCTCTTACGTTGCCAAGTCGCTCATCAGAAGTTTTCGTTCC
AAGGAACGAAGGGCAGCAAAACGAGGATGAGATTGTTAAAGTATATTTTG
ACGTTCCTTACCTTGGTTTAAAAGGTGAGAATTTGGTAAGATCTTGCATT
CAAAAGTTACGTCGTTTCACAAAGAGTAAAGTTCATTTTgttaaaaagtt
caaaacaaagaaaagcgCTATGTTTTGTTCAACGAAAGATCGAATCCCTG
AATTGCAGAAGGCAAATCTAATTTACAAGCTATCGTGCCCAGGCTGTGGA
AAAGACTACATTGGTAAGACTGACCGTTGTCTGTCCATTCGCTTTTAAAG
GAGCATGGTACCCGAGACAATCAGTCAATGAACTTCCATTTGAAAAACTG
CCAAGATTTCTATGTATTTGATAATTATTCTATTGTAGATTCTTCTTTGT
CATGGTTACATTTGATATTCTTAGAGACATCATGGAGGCATATTatatca
aaaagttttctcCAGAGATCAAATTGTGGATCAAAGGAATTGCAATTATT
CTCTTGATAATTGCTTCCTTTTATCTATCAATTCACAGTTGATCATATTT
CTT Run BLAST on NCBI protein sequence of TCONS_00025083-protein >TCONS_00025083-protein ID=TCONS_00025083-protein|Name=TCONS_00025083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MTELEKHVVTKLFNDDIIKFYIRFVDDTLVLAKPTAFDSILEKLNNNLTK
KVYNGYFDDGNVHFLDIKIDGTETDVYFKPTHTGQYSYFTSQSPWRLKTA
WARSLFNRASKICSSQHALNGQIRKLKQFLSWNGYPSYVAKSLIRSFRSK
ERRAAKRG Run BLAST on NCBI transcript from alignment at sc0000520:176892..178644 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025083 ID=TCONS_00025083|Name=TCONS_00025083|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at sc0000520:176892..178644 (Clytia hemisphaerica)
AAGAAATATGATCAACTGTGAATTGATAGATAAAAGGAAGCAATTATCAA
GAGAATAATTGCAATTCCTTTGATCCACAATTTGATCTCTGgagaaaact
ttttgatatAATATGCCTCCATGATGTCTCTAAGAATATCAAATGTAACC
ATGACAAAGAAGAATCTACAATAGAATAATTATCAAATACATAGAAATCT
TGGCAGTTTTTCAAATGGAAGTTCATTGACTGATTGTCTCGGGTACCATG
CTCCTTTAAAAGCGAATGGACAGACAACGGTCAGTCTTACCAATGTAGTC
TTTTCCACAGCCTGGGCACGATAGCTTGTAAATTAGATTTGCCTTCTGCA
ATTCAGGGATTCGATCTTTCGTTGAACAAAACATAGcgcttttctttgtt
ttgaactttttaacAAAATGAACTTTACTCTTTGTGAAACGACGTAACTT
TTGAATGCAAGATCTTACCAAATTCTCACCTTTTAAACCAAGGTAAGGAA
CGTCAAAATATACTTTAACAATCTCATCCTCGTTTTGCTGCCCTTCGTTC
CTTGGAACGAAAACTTCTGATGAGCGACTTGGCAACGTAAGAGGGATACC
CATTCCAAGATAAGAATTGCTTCAGTTTTCTGATCTGACCATTGAGAGCG
TGTTGTGACGAGCAGATTTTAGATGCACGATTGAATAAAGATCTAGCCCA
AGCTGTTTTCAACCTCCAGGGAGATTGGCTGGTAAAATAACTATACTGGC
CTGTGTGTGTTGGTTTGAAATAAACATCGGTTTCAGTTCCGTCAATCTTA
ATATCAAGGAAATGAACGTTTCCGTCGTCAAAGTATCCAttgtaaacttt
ttttgttaaattattGTTAAGTTTTTCGAGGATTGAATCAAAGGCAGTAG
GTTTAGCAAGGACTAGGGTATCATCAACGAATCTAATGTAAAATTTGATG
ATATCATCATTGAAAAGCTTTGTGACAACATGTTTTTCAAGTTCAGTCAT
GATAACGTTTGCGAGGGTTGGTGTTAGGATCCTAGTCTATATTATAGTCG
GTACCGTAAGGTCGGCTTTGTATCTTATAGTCGGCGCCGGTACTTTAGTA
TGTTATCTTAGAATCAAACATGGCGCTGCTAGTAGGAACAACTAGAgtgg
aaaggaaaagaaaatacaatCTGAAAATATCCTCATAATCAACATTTGAA
ATGGCAGAAAAAGCTATAAAACCGCCGAGATTAGACCTGTCGGTGGACAG
GTTCGCTGCATTTCAGGCCTGGCAGGCGAAATAGCAAGACTATGTGCTGC
TAACTAAACTAAACAGAAAACCAGCAGAATATCAAGCAGCCATGCTTCGA
TATACGTTTACTGAAGAAACACGAAACATTTACGAATCACTGAGCCTGag
tgaagaagagaagaaaagTTCGGACACGATTAAGgcgaaaatgaaagaat
ttgcTAAAGGACTAGAAACGAAACTTTAGAACGACATGTGTTTAATTCAA
GAAAACAAGAAGAAGGTGAATCGTTTGATGACTTCTTAACCGAAGTGAAA
CTCTTGAGCAGGAACTGCAATTATTGTGATACATGCTATCCTGGTTTGTT
GAGAGACAGGATCGTTGCTGGTATTCAAAGCGATATCGTTCGAAAAAAGT
TACTAGCTGAAGAAAAACTTACTCTCGAGAAAGCAGTGAATATATGCAGA
GCTGTTGAAAAGGCTACACAAGGTTTACagtcaatgaaaaatgaagaagc
agA Coding sequence (CDS) from alignment at sc0000520:176892..178644 >TCONS_00025083 ID=TCONS_00025083|Name=TCONS_00025083|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000520:176892..178644 (Clytia hemisphaerica)
TCATCCTCGTTTTGCTGCCCTTCGTTCCTTGGAACGAAAACTTCTGATGA
GCGACTTGGCAACGTAAGAGGGATACCCATTCCAAGATAAGAATTGCTTC
AGTTTTCTGATCTGACCATTGAGAGCGTGTTGTGACGAGCAGATTTTAGA
TGCACGATTGAATAAAGATCTAGCCCAAGCTGTTTTCAACCTCCAGGGAG
ATTGGCTGGTAAAATAACTATACTGGCCTGTGTGTGTTGGTTTGAAATAA
ACATCGGTTTCAGTTCCGTCAATCTTAATATCAAGGAAATGAACGTTTCC
GTCGTCAAAGTATCCAttgtaaactttttttgttaaattattGTTAAGTT
TTTCGAGGATTGAATCAAAGGCAGTAGGTTTAGCAAGGACTAGGGTATCA
TCAACGAATCTAATGTAAAATTTGATGATATCATCATTGAAAAGCTTTGT
GACAACATGTTTTTCAAGTTCAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025083-exon-sc0000520-1491911889:176892..178644 | TCONS_00025083-exon-sc0000520-1491911889:176892..178644 | Clytia hemisphaerica | exon |
| TCONS_00025083-exon-sc0000520-1510915933:176892..178644 | TCONS_00025083-exon-sc0000520-1510915933:176892..178644 | Clytia hemisphaerica | exon |
| TCONS_00025083-exon-sc0000520-1575043694:176892..178644 | TCONS_00025083-exon-sc0000520-1575043694:176892..178644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000520 | supercontig | sc0000520:176892..178644 . |
Blast
The following BLAST results are available for this feature:
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