TCONS_00025084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025084
Unique NameTCONS_00025084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025084 ID=TCONS_00025084|Name=TCONS_00025084|organism=Clytia hemisphaerica|type=transcript|length=470bp
ATCGAAACAGAGAGTCCAGACAGCATTGAAATCTTTCACTTACAACTACC
AGTAGAAGATTTAATTCCTGCGTAACTTACGTAAACGTTGCGTTATCTTG
AAACCCGACAAAGGACAAGGCATTGTTTTAGTAGACCAAGAAAATTACAA
TGCTTCAATCGAGAAGATATTTGGTGATGAAACAAAGTTTCGAGTTTGCG
ATGACGATTCCACAATACGCAATCTTAACTCTCTCCAGTCATACCACAAC
ACGCTATTAAATCGTGGCGAAATAAACGATAAAGaaacagaaagaaaaga
aatcaaTGAGACCAAAACATGGACACTTAGGAAGAGCTCATGGTTTACCT
AAAATTCACAAAGTTTACCATAACCTACCTCCCTTTCGTCCAATCATTGA
CACTACTGGCACTCCCAATTACGGTGTTGGTAAGTTTTTATCTGAATTGA
TTTCTCCACTTACAATGAAC
Run BLAST on NCBI

transcript from alignment at sc0000520:181913..182382

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025084 ID=TCONS_00025084|Name=TCONS_00025084|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0000520:181913..182382 (Clytia hemisphaerica)
GTTCATTGTAAGTGGAGAAATCAATTCAGATAAAAACTTACCAACACCGT
AATTGGGAGTGCCAGTAGTGTCAATGATTGGACGAAAGGGAGGTAGGTTA
TGGTAAACTTTGTGAATTTTAGGTAAACCATGAGCTCTTCCTAAGTGTCC
ATGTTTTGGTCTCAttgatttcttttctttctgtttCTTTATCGTTTATT
TCGCCACGATTTAATAGCGTGTTGTGGTATGACTGGAGAGAGTTAAGATT
GCGTATTGTGGAATCGTCATCGCAAACTCGAAACTTTGTTTCATCACCAA
ATATCTTCTCGATTGAAGCATTGTAATTTTCTTGGTCTACTAAAACAATG
CCTTGTCCTTTGTCGGGTTTCAAGATAACGCAACGTTTACGTAAGTTACG
CAGGAATTAAATCTTCTACTGGTAGTTGTAAGTGAAAGATTTCAATGCTG
TCTGGACTCTCTGTTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014104XLOC_014104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025084-exon-sc0000520-1491911889:181913..182382TCONS_00025084-exon-sc0000520-1491911889:181913..182382Clytia hemisphaericaexon
TCONS_00025084-exon-sc0000520-1510915933:181913..182382TCONS_00025084-exon-sc0000520-1510915933:181913..182382Clytia hemisphaericaexon
TCONS_00025084-exon-sc0000520-1575043694:181913..182382TCONS_00025084-exon-sc0000520-1575043694:181913..182382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:181913..182382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22337	1.85574	0.923442	0.602296	0.183309	0.289707	0.349519	0.163608	0.229091	0.283767	0.413146	0.181057	0.0904028	0	0.540299	1.07682	0.204084	0.73213	0.577987	0.907232	0.657124	0.192313	0.467564	0.283389	0.437826	0.13025	0.186387	0.198917	0.603487	0.153714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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