TCONS_00025085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025085
Unique NameTCONS_00025085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025085 ID=TCONS_00025085|Name=TCONS_00025085|organism=Clytia hemisphaerica|type=transcript|length=644bp
CCTCGACATGTCTTTATAATCAGCCACATGTTTGGACGATTTTCATGTTG
ATGTGTAACACAGTGCTCCCTTTTTTAATCATCCTAATCATCTATATCTA
CATAGCGCGCAAAATGAACTCAAGCGCTCAGGAATTATTTGAAGATAAAT
TTAACCTTGATCGCAGGTTGGCATTGAATCGTAAAATCACGATGCTTACG
ATAAAGATTACGTTGATTTACGGTGTAACGTGGCTCCCTTCTATCGTCTA
TTACAGTATCGTTACCATAGCACCTCGGACATTCCCGGACGCTTTTTATG
TTTCGGACGCAGAAACTATCATAACGTTCATCAATAAGTACATCACTTTT
TTTGATGCAGTTTTTGCACCGATGCTCTATTGCTATAGTAGTAAAGATTT
CCGTAGCGCTATACGGTCCGTTTTACGTCGTAAATAAAGGAGGGCGTCGT
GAATGTAAACAGCGCCGTAATGGTGATCTACCTTTGATTGAAACGAAAGA
ATCAGACACCGTTCTTTACATAGTATAAAATTGAATCTATAATCAATcag
acaaaaattgaaattgaagaatTAAATTGAAGACTTTTTTAGTCTTAAAG
AGCTTACAGAAATATTATTACGacggagtctctttaactcaaac
Run BLAST on NCBI

protein sequence of TCONS_00025085-protein

>TCONS_00025085-protein ID=TCONS_00025085-protein|Name=TCONS_00025085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
STCLYNQPHVWTIFMLMCNTVLPFLIILIIYIYIARKMNSSAQELFEDKF
NLDRRLALNRKITMLTIKITLIYGVTWLPSIVYYSIVTIAPRTFPDAFYV
SDAETIITFINKYITFFDAVFAPMLYCYSSKDFRSAIRSVLRRK
Run BLAST on NCBI

transcript from alignment at sc0000520:202610..203253

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025085 ID=TCONS_00025085|Name=TCONS_00025085|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at sc0000520:202610..203253 (Clytia hemisphaerica)
gtttgagttaaagagactccgtCGTAATAATATTTCTGTAAGCTCTTTAA
GACTAAAAAAGTCTTCAATTTAattcttcaatttcaatttttgtctgATT
GATTATAGATTCAATTTTATACTATGTAAAGAACGGTGTCTGATTCTTTC
GTTTCAATCAAAGGTAGATCACCATTACGGCGCTGTTTACATTCACGACG
CCCTCCTTTATTTACGACGTAAAACGGACCGTATAGCGCTACGGAAATCT
TTACTACTATAGCAATAGAGCATCGGTGCAAAAACTGCATCAAAAAAAGT
GATGTACTTATTGATGAACGTTATGATAGTTTCTGCGTCCGAAACATAAA
AAGCGTCCGGGAATGTCCGAGGTGCTATGGTAACGATACTGTAATAGACG
ATAGAAGGGAGCCACGTTACACCGTAAATCAACGTAATCTTTATCGTAAG
CATCGTGATTTTACGATTCAATGCCAACCTGCGATCAAGGTTAAATTTAT
CTTCAAATAATTCCTGAGCGCTTGAGTTCATTTTGCGCGCTATGTAGATA
TAGATGATTAGGATGATTAAAAAAGGGAGCACTGTGTTACACATCAACAT
GAAAATCGTCCAAACATGTGGCTGATTATAAAGACATGTCGAGG

Coding sequence (CDS) from alignment at sc0000520:202610..203253

>TCONS_00025085 ID=TCONS_00025085|Name=TCONS_00025085|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000520:202610..203253 (Clytia hemisphaerica)
TTATTTACGACGTAAAACGGACCGTATAGCGCTACGGAAATCTTTACTAC
TATAGCAATAGAGCATCGGTGCAAAAACTGCATCAAAAAAAGTGATGTAC
TTATTGATGAACGTTATGATAGTTTCTGCGTCCGAAACATAAAAAGCGTC
CGGGAATGTCCGAGGTGCTATGGTAACGATACTGTAATAGACGATAGAAG
GGAGCCACGTTACACCGTAAATCAACGTAATCTTTATCGTAAGCATCGTG
ATTTTACGATTCAATGCCAACCTGCGATCAAGGTTAAATTTATCTTCAAA
TAATTCCTGAGCGCTTGAGTTCATTTTGCGCGCTATGTAGATATAGATGA
TTAGGATGATTAAAAAAGGGAGCACTGTGTTACACATCAACATGAAAATC
GTCCAAACATGTGGCTGATTATAAAGACATGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014105XLOC_014105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025085-proteinTCONS_00025085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025085-exon-sc0000520-1491911889:202610..203253TCONS_00025085-exon-sc0000520-1491911889:202610..203253Clytia hemisphaericaexon
TCONS_00025085-exon-sc0000520-1510915933:202610..203253TCONS_00025085-exon-sc0000520-1510915933:202610..203253Clytia hemisphaericaexon
TCONS_00025085-exon-sc0000520-1575043694:202610..203253TCONS_00025085-exon-sc0000520-1575043694:202610..203253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:202610..203253 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.184688	0.0903444	0.219971	0	0.419423	0.490823	0.137455	0.08513	0.0826292	0.162952	0.0542417	0	0	0.0993983	0	0.251016	0.173396	0.635062	0.31542	0	0.187026	0.5101	0	0.547049	0	0	0.181046	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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