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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025087 ID=TCONS_00025087|Name=TCONS_00025087|organism=Clytia hemisphaerica|type=transcript|length=1853bp
tttttgtgCTGAACTATTATTCAAATTACGATTTCTGAAGAAATGGCTGA
ACTATCAGAGTTGCATTGCTGTCATTTTACTTGGAAAATCGCGAATCAAA
GCTTACAAAGAAATCGATTCTTACGGGACCGAATTTACACAATCGAAGAA
GAAATCAAGTCTCAAAACGAAGGAAAATCAAAGAAACGAAACTATCCACA
ACTTTTATCGCTTCAAGCTTTCCTCAATGTGTTGCTGTATCGCAACAAAa
acgaagatgaagatgaaaatgaagatcgTTTATTGAAAAATGCTGAATCC
TGTCTCAATCAAGCTTTGAAAGAATGTAATTCAATTTCGAAAGAAGACGA
AGACGAAGCCAATGGCTATCGATTGGTCATCTATGCTGACTTTATTAATT
TGCATCAATATCGGCCAAACGAGAATGTCGAAGATTATAAGGATGCTTTC
AATGATTTGATAAGTCATGGTTTGTCAGTCGATGAACACCCGTCAGTGTT
GGCCATGAAAGGTTTCACTGCCAGTCACTTAGATTTTCAGCAAAAAGCAG
AAATTTTGTATCAGAAAGCCTTGAAAGCCATGGAAAAACCCGAATGGTTG
TTTGGCTTAGCTCTGGCAAAATTGCAATTGGACTATTGGCGATTAAGCCC
AGTCGATAATAAGGAGATTCAAAGACTTTTGCAACAAGCCATCAAATTGG
ATCCCACATATGATATGGCGAGAATCAAACTGGCCAGATGTTTGTTGGAT
CAGCATAAAAGAAGTAACCAGAACGGTGCTCATCTCCCCCAGATGCTGGT
AACGCAGATTAATTATCTTGTGGATCCAATACATAACAGTAATGACCATA
ATGGAATCGGGTTAAATATTTTGGAAGAAATTGGAGCTTTATATAGTAGG
ATGGACAACTATCTTGATAAGGGATTACGACTTTACAAAGAATGCCGAAG
ACGGGATCCTAAATCAATGAAAGCTTTACGTGGCCTTGCAAATACCTACT
TTCACAAGTGGAAAAGCTCGAGACATGAATCTGAATTGAAGAAATCGGTA
AAGCTTTCTAACCAAATTAATGATCTGGAAAATTCGAAAATGTATGACGT
CACAATGTTGGGTGTTGTTCATTTTAGTGCATTCAAATTCTATTTGGGGA
TAGATAAGGTAAAGGCTCAAGATCACAAAGCCGAATGGAAAAGTTGTTTC
CAGAAAGTAGAAGAACTTTTTCACCAAGGCCAACTGGAAGTTAAAGAAGA
AATTGAGATGTGTCACCGTTTGGCATTGTTCTATGAATACTTACAAAAAC
CTTTGAAAGAAAGGAAGTATTTGCAATTGGTTTTGGATATCAATAACAAA
GCGCTAAGAGAAGGCGCTGGAGATTTTCAAGAATCACCATATGTGAAAAA
TGCTCAAGAAAAACTGTCAGAATTCCAATGAGAACTTCATTGTACGGTCT
ATGAGACAATTTGCTGAATTTTATACAAATTGTCAACCccaaattttttg
acaaaatgacacttaaattatgtaaatcaTGATATTATCAAAAATATGAC
GAACTACAGCGATATGAGGGGTTTTGATCGCTACAGAACTCTAACAAGAG
ATTCAAACCAGActctagattttcatttttcctattTCGGTGACATTAGC
GGACCTTAGATGATGGCCAAAGTATTTTTGGATATCAAAGCTCTTAGAGA
AAACACCTgaaatttgagctttactaagcttATTTGACGTCAAgcgatac
ttcgattatcagccaGATTGTTGATTTTGGCATTTCATTCTTCCATTGTG
TGAAAAGTTGATCGTTAAAACTACCAAATcgaatttttcaactttcatta
ACC Run BLAST on NCBI protein sequence of TCONS_00025087-protein >TCONS_00025087-protein ID=TCONS_00025087-protein|Name=TCONS_00025087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MAELSELHCCHFTWKIANQSLQRNRFLRDRIYTIEEEIKSQNEGKSKKRN
YPQLLSLQAFLNVLLYRNKNEDEDENEDRLLKNAESCLNQALKECNSISK
EDEDEANGYRLVIYADFINLHQYRPNENVEDYKDAFNDLISHGLSVDEHP
SVLAMKGFTASHLDFQQKAEILYQKALKAMEKPEWLFGLALAKLQLDYWR
LSPVDNKEIQRLLQQAIKLDPTYDMARIKLARCLLDQHKRSNQNGAHLPQ
MLVTQINYLVDPIHNSNDHNGIGLNILEEIGALYSRMDNYLDKGLRLYKE
CRRRDPKSMKALRGLANTYFHKWKSSRHESELKKSVKLSNQINDLENSKM
YDVTMLGVVHFSAFKFYLGIDKVKAQDHKAEWKSCFQKVEELFHQGQLEV
KEEIEMCHRLALFYEYLQKPLKERKYLQLVLDINNKALREGAGDFQESPY
VKNAQEKLSEFQ Run BLAST on NCBI transcript from alignment at sc0000521:4399..6508+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025087 ID=TCONS_00025087|Name=TCONS_00025087|organism=Clytia hemisphaerica|type=transcript|length=2110bp|location=Sequence derived from alignment at sc0000521:4399..6508+ (Clytia hemisphaerica)
tttttgtgCTGAACTATTATTCAAATTACGATTTCTGAAGGTAACTATTT
TCATTGCATTTTTATTTCCGTTTTAAGGTTGAGTTAAAGATTAGATGACA
TCACCATTTGTGAAACTTCAAGTTAATGCGTTTCGGAAAACTACAATCTT
GCCGAAAAGCTGGTCAGGAGtagatttattttgaatttctgAAAGTAGCG
AAgttacttttatttttcattttaatatcGCCAGTTGATAACCATTTGCC
AGTTTTCTTTCTATACTTTTAAGTCTCAATCGTTATGTTTCCTATAGAAA
TGGCTGAACTATCAGAGTTGCATTGCTGTCATTTTACTTGGAAAATCGCG
AATCAAAGCTTACAAAGAAATCGATTCTTACGGGACCGAATTTACACAAT
CGAAGAAGAAATCAAGTCTCAAAACGAAGGAAAATCAAAGAAACGAAACT
ATCCACAACTTTTATCGCTTCAAGCTTTCCTCAATGTGTTGCTGTATCGC
AACAAAaacgaagatgaagatgaaaatgaagatcgTTTATTGAAAAATGC
TGAATCCTGTCTCAATCAAGCTTTGAAAGAATGTAATTCAATTTCGAAAG
AAGACGAAGACGAAGCCAATGGCTATCGATTGGTCATCTATGCTGACTTT
ATTAATTTGCATCAATATCGGCCAAACGAGAATGTCGAAGATTATAAGGA
TGCTTTCAATGATTTGATAAGTCATGGTTTGTCAGTCGATGAACACCCGT
CAGTGTTGGCCATGAAAGGTTTCACTGCCAGTCACTTAGATTTTCAGCAA
AAAGCAGAAATTTTGTATCAGAAAGCCTTGAAAGCCATGGAAAAACCCGA
ATGGTTGTTTGGCTTAGCTCTGGCAAAATTGCAATTGGACTATTGGCGAT
TAAGCCCAGTCGATAATAAGGAGATTCAAAGACTTTTGCAACAAGCCATC
AAATTGGATCCCACATATGATATGGCGAGAATCAAACTGGCCAGATGTTT
GTTGGATCAGCATAAAAGAAGTAACCAGAACGGTGCTCATCTCCCCCAGA
TGCTGGTAACGCAGATTAATTATCTTGTGGATCCAATACATAACAGTAAT
GACCATAATGGAATCGGGTTAAATATTTTGGAAGAAATTGGAGCTTTATA
TAGTAGGATGGACAACTATCTTGATAAGGGATTACGACTTTACAAAGAAT
GCCGAAGACGGGATCCTAAATCAATGAAAGCTTTACGTGGCCTTGCAAAT
ACCTACTTTCACAAGTGGAAAAGCTCGAGACATGAATCTGAATTGAAGAA
ATCGGTAAAGCTTTCTAACCAAATTAATGATCTGGAAAATTCGAAAATGT
ATGACGTCACAATGTTGGGTGTTGTTCATTTTAGTGCATTCAAATTCTAT
TTGGGGATAGATAAGGTAAAGGCTCAAGATCACAAAGCCGAATGGAAAAG
TTGTTTCCAGAAAGTAGAAGAACTTTTTCACCAAGGCCAACTGGAAGTTA
AAGAAGAAATTGAGATGTGTCACCGTTTGGCATTGTTCTATGAATACTTA
CAAAAACCTTTGAAAGAAAGGAAGTATTTGCAATTGGTTTTGGATATCAA
TAACAAAGCGCTAAGAGAAGGCGCTGGAGATTTTCAAGAATCACCATATG
TGAAAAATGCTCAAGAAAAACTGTCAGAATTCCAATGAGAACTTCATTGT
ACGGTCTATGAGACAATTTGCTGAATTTTATACAAATTGTCAACCccaaa
ttttttgacaaaatgacacttaaattatgtaaatcaTGATATTATCAAAA
ATATGACGAACTACAGCGATATGAGGGGTTTTGATCGCTACAGAACTCTA
ACAAGAGATTCAAACCAGActctagattttcatttttcctattTCGGTGA
CATTAGCGGACCTTAGATGATGGCCAAAGTATTTTTGGATATCAAAGCTC
TTAGAGAAAACACCTgaaatttgagctttactaagcttATTTGACGTCAA
gcgatacttcgattatcagccaGATTGTTGATTTTGGCATTTCATTCTTC
CATTGTGTGAAAAGTTGATCGTTAAAACTACCAAATcgaatttttcaact
ttcattaACC Coding sequence (CDS) from alignment at sc0000521:4399..6508+ >TCONS_00025087 ID=TCONS_00025087|Name=TCONS_00025087|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at sc0000521:4399..6508+ (Clytia hemisphaerica)
ATGGCTGAACTATCAGAGTTGCATTGCTGTCATTTTACTTGGAAAATCGC
GAATCAAAGCTTACAAAGAAATCGATTCTTACGGGACCGAATTTACACAA
TCGAAGAAGAAATCAAGTCTCAAAACGAAGGAAAATCAAAGAAACGAAAC
TATCCACAACTTTTATCGCTTCAAGCTTTCCTCAATGTGTTGCTGTATCG
CAACAAAaacgaagatgaagatgaaaatgaagatcgTTTATTGAAAAATG
CTGAATCCTGTCTCAATCAAGCTTTGAAAGAATGTAATTCAATTTCGAAA
GAAGACGAAGACGAAGCCAATGGCTATCGATTGGTCATCTATGCTGACTT
TATTAATTTGCATCAATATCGGCCAAACGAGAATGTCGAAGATTATAAGG
ATGCTTTCAATGATTTGATAAGTCATGGTTTGTCAGTCGATGAACACCCG
TCAGTGTTGGCCATGAAAGGTTTCACTGCCAGTCACTTAGATTTTCAGCA
AAAAGCAGAAATTTTGTATCAGAAAGCCTTGAAAGCCATGGAAAAACCCG
AATGGTTGTTTGGCTTAGCTCTGGCAAAATTGCAATTGGACTATTGGCGA
TTAAGCCCAGTCGATAATAAGGAGATTCAAAGACTTTTGCAACAAGCCAT
CAAATTGGATCCCACATATGATATGGCGAGAATCAAACTGGCCAGATGTT
TGTTGGATCAGCATAAAAGAAGTAACCAGAACGGTGCTCATCTCCCCCAG
ATGCTGGTAACGCAGATTAATTATCTTGTGGATCCAATACATAACAGTAA
TGACCATAATGGAATCGGGTTAAATATTTTGGAAGAAATTGGAGCTTTAT
ATAGTAGGATGGACAACTATCTTGATAAGGGATTACGACTTTACAAAGAA
TGCCGAAGACGGGATCCTAAATCAATGAAAGCTTTACGTGGCCTTGCAAA
TACCTACTTTCACAAGTGGAAAAGCTCGAGACATGAATCTGAATTGAAGA
AATCGGTAAAGCTTTCTAACCAAATTAATGATCTGGAAAATTCGAAAATG
TATGACGTCACAATGTTGGGTGTTGTTCATTTTAGTGCATTCAAATTCTA
TTTGGGGATAGATAAGGTAAAGGCTCAAGATCACAAAGCCGAATGGAAAA
GTTGTTTCCAGAAAGTAGAAGAACTTTTTCACCAAGGCCAACTGGAAGTT
AAAGAAGAAATTGAGATGTGTCACCGTTTGGCATTGTTCTATGAATACTT
ACAAAAACCTTTGAAAGAAAGGAAGTATTTGCAATTGGTTTTGGATATCA
ATAACAAAGCGCTAAGAGAAGGCGCTGGAGATTTTCAAGAATCACCATAT
GTGAAAAATGCTCAAGAAAAACTGTCAGAATTCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025087-exon-sc0000521-1491911889:4399..4438 | TCONS_00025087-exon-sc0000521-1491911889:4399..4438 | Clytia hemisphaerica | exon |
| TCONS_00025087-exon-sc0000521-1510915933:4399..4438 | TCONS_00025087-exon-sc0000521-1510915933:4399..4438 | Clytia hemisphaerica | exon |
| TCONS_00025087-exon-sc0000521-1575043694:4399..4438 | TCONS_00025087-exon-sc0000521-1575043694:4399..4438 | Clytia hemisphaerica | exon |
| TCONS_00025087-exon-sc0000521-1491911889:4696..6508 | TCONS_00025087-exon-sc0000521-1491911889:4696..6508 | Clytia hemisphaerica | exon |
| TCONS_00025087-exon-sc0000521-1510915933:4696..6508 | TCONS_00025087-exon-sc0000521-1510915933:4696..6508 | Clytia hemisphaerica | exon |
| TCONS_00025087-exon-sc0000521-1575043694:4696..6508 | TCONS_00025087-exon-sc0000521-1575043694:4696..6508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:4399..6508 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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