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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025089 ID=TCONS_00025089|Name=TCONS_00025089|organism=Clytia hemisphaerica|type=transcript|length=779bp
GGTGAAATTAGCGTAAACATCTAAACAGAATGGTTTTCTGGTTGCTGTAG
CAgattaaaattccaaaaaagaaCTTTAAATATAAATGTGTGGAGTGTGA
ACATTTTCCCAAGACAAGGGTCGAGCCTATGATTTAGGCAGTAAGCATGT
CTACATGGTTGATGCTTTTGCAATTTGCATTCTTCATAACGTTATCTTTT
TGTGGCAATGAATTGCACATCATCAATGAGAGGAGACcagaaaaccaaaa
acatttcaCCTCATCTatagacttttttacaaacaaagATAAAGGGAATA
GAGATTTCTGTAACAGTTTGAATGCAACTTGTGTCCATAAAGAAATTTGT
GATAAATGTCGGTGTGACAAGGATTTCATATGGCTGGATTATACTCAAGG
ATGCAAGGGTCAACAATATTTGTATAACATTACTAATGGGGAAAGGTGTT
TCACGCATTCAACTGATGCATCATGGGTACCCACAGTTCAAGAAAACATA
TCAGAGAATACTACGTTACCTCTTTACGTCCATGATACTTCAAATTTACC
CAATGATATTCAGAATGTTTCGTGGAGTTGCCAAACGGACAAAGTAGTTT
GGGTTTATAACGGGAGTATCATTTTGAAAGAGAGTTTTGCAAGTGATATC
AAGATAAACAGCAATGGAAACAAAACTTTACAGGTATGTTTTCGCTCTCT
TAGAGCGACCGTAATGCAATGGTAGAACATCTGGCTATGTTGGTGTGGTT
GTGTGTTCAACCCCCAGCGGGGTCATACC Run BLAST on NCBI protein sequence of TCONS_00025089-protein >TCONS_00025089-protein ID=TCONS_00025089-protein|Name=TCONS_00025089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MSTWLMLLQFAFFITLSFCGNELHIINERRPENQKHFTSSIDFFTNKDKG
NRDFCNSLNATCVHKEICDKCRCDKDFIWLDYTQGCKGQQYLYNITNGER
CFTHSTDASWVPTVQENISENTTLPLYVHDTSNLPNDIQNVSWSCQTDKV
VWVYNGSIILKESFASDIKINSNGNKTLQVCFRSLRATVMQW Run BLAST on NCBI transcript from alignment at sc0000521:19263..23393+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025089 ID=TCONS_00025089|Name=TCONS_00025089|organism=Clytia hemisphaerica|type=transcript|length=4131bp|location=Sequence derived from alignment at sc0000521:19263..23393+ (Clytia hemisphaerica)
GGTGAAATTAGCGTAAACATCTAAACAGAATGGTTTTCTGGTTGCTGTAG
CAgattaaaattccaaaaaagaaCTTTAAATATAAATGTGTGGAGTGTGA
ACATTTTCCCAAGACAAGGGTCGAGCCTATGATTTAGGCAGTAAGCATGT
CTACATGGTTGATGCTTTTGCAATTTGCATTCTTCATAACGTTATCTTTT
TGTGGCAATGAATTGCACATCATCAATGAGAGGAGACcagaaaaccaaaa
acatttcaCCTCATCTatagacttttttacaaacaaagATAAAGGGAATA
GAGATTTCTGTAACAGTTTGAATGCAACTTGTGTCCATAAAGAAATTTGT
GATAAATGTCGGTGTGACAAGGATTTCATATGGCTGGATTATACTCAAGG
ATGCAAGGGTCAACAATATTTGTATAACATTACTAATGGTTTGTCCAATT
CTTTCGGTGAAATATGTTATATGTAACGCCTTTTGCTCGGGGAAAAGGTT
AAGGAActtgccgctggtcagggtctcTTTTTAAGCCTCATCTGTTTCAG
TCATATTTTCACCCATGGTTAGAACTTGATCAGAAAAATACCGGACTAGC
GGACTCAAACTTGGACCCTTAcaatgcagagaaaatttagcccccggggg
ggggggcactttttgattttgaaaacgaccgtacgttcggccaaaaatca
agTCTCTAAAATCGGgtccttacagtgcagaaaaaatttggttgaaaatg
gacccttacagtgcaatttttcgaatttttttgcccttttcagttttacc
tcaaaatttagtattttctcaaattttatacccttacagtgcactttttc
ccacttgctcacaaatcaacccttacagtgcactttccaaagtctaaaaa
acctaccattaagggccgcacgtccggtaggtcacttacctgaaGTGCCC
CCCCCCTCGGATTTAGCCCCAAATTTGAATTGTGAAATCGTGCATTTTGG
GAATTAAAAGTCAAGTTTTAAATATCTGTCCATCTTAAATGGTAGAATAT
ATCCATTAAAACAAGTCGTTAAAAGTGTGCTAGCGAGACTTATCTTGTTT
TTagttctgatttttttcatcggCTGCACTTCCTGTATTTAATCAAGGTC
GAACACTTCACTCAGTAAATTCTTTATCAAACAAAACaccgatacacgtt
ttttataagaaaaaactatataagaacataaggcttcgatggccaaaatg
ttaagaacaagttaagaacattttaaggctgtacagactctaaaacaccc
gatttcttaggaaaatggacaaaaatgctcaaaaaatggcgaaaattaga
acttcttaaaacatttttaggtttaaaactccaaaagttaagaTCATCcg
taggcttcaaaaatgttggatgttcttataaaaaacaccgATGTTTAGAA
CGTGAATAGTCTTGCAAAATAGTTGTGGCCACTTATTCATAATAGCCTTT
CcatccatttttcttttaaNGTGTattcaatgaaacgaggggttatCAAT
ACAAAATCATCCGAGAaattccgcgttaattatatggtcaaaaaaagaat
tgaagaacacttaatcgctattcttttcgaaacttataaaaacattcgaa
actataaaaaaccATTCGACTGAAACTCTTATTTtgattaaccaatcaaa
atattgtacgatacttttctttcaaccaatagaaattgtTGTTTATATCa
aggcgattacaaaaaagcggggctattacggatttatcgccccgctcgtc
ctttacaaatctaagctaaatgtaatcaaccatataattaacgggaatat
aatttatatcaaggcgattacaaaaaagcggggctattacggatttatcg
ccccgctcgtcctttacaaatctaagctaaatgtaatcaaccatataatt
aacgggaatataatttatatcaaggcgattacaaaaaagcggggctatta
cggatttatcgccccgctcgtcctttacaaatctaagctaaatgtaatca
accatataattaacgggaatataatttatatcaaggcgattacaaaaaag
cggggctattacggatttatcgccccgctcgtcctttacaaatctaagct
aaatgtaatcaaccatataattaacgggaatataatttatatcaaggcga
ttacaaaaaagcggggctattacggatttatcgccccgctcgtcctttac
aaatctaagctaaatgtaatcaaccatataattaacgggaatataattta
tatcaaggcgattacaaaaaagcggggctattacggatttatcgccccgc
tcgtcctttacaaatctaagctaaatgtaatcaaccatataattaacggg
aatataatttatatcaaggcgattacaaaaaagcggggctattacggatt
tatcgccccgctcgtcctttacaaatctaagctaaatgtaatcaaccata
taattaacgggaatataatttatatcaaggcgattacaaaaaagcggggc
tattacggatttatcgccccgctcgtcctttacaaatctaagctaaatgt
aatcaaccatataattaacgggaatataatttatatcaaggcgattacaa
aaaagcggggctattacggatttatcgccccgctcgtcctttacaaatct
aagctaaatgtaatcaacNCTTCGAAATCCTAAAGGTCGATTTAAAACAA
TGCAGTGCTGATGAGATTATTTGGAGATAAAGGTAATCCATGAAtagcaa
aacattttttcattaaattatAATGCAATTACACTGCCACTGATCTATCT
TTATAAGCATATTGAAATCAAAGTTTATATGGTAATTTAcatcagatgag
atggagtttttataagatactttaataattggtcatttgaagtaatgaaa
atgacgcgttctttagaaaatgtaacaaaattgttttattactggttaac
gaccaagcaaatcaaataagagctttaaaaactccatctcgtcccattTA
CATGTTGTCTTCATAAATTCAGTAAAACTTGactattttaccaaaattta
aaTTCGACTGCgttaaaacacccccttctcacaaacccagtaggattttt
tcagccagtggaggTAAAAGTAAAAGACCTAAACTCGACGGGGATTGATA
tttacatgtttcttttatggCTGGGCATTTGAATTCTATACTTtccgagc
cagaaaattcagtgggatgaaaaaaataaaacaatattttCAGTGAAGAT
TTGGTTATCTAATTATTCACTGCTGAGACAAAAATTATAGTATAATTTAC
CACTGGGGACGGTATTATGGCCATTTTCTCCAGTGGGAAAGGGTCCCAGT
GGATCTGTGTGAAGGGTTATGTTAACCTATCCCAAACTTAAATCTGTGTG
TAAATGACTCACGACTTTTGTGCCTTTAAATGATTTGCGACATGGTTAAA
GTGCCAGGACAAGCATTATTATGATCTTCTTTGATCCGTTGGAagtaagg
gggggggggggggaaaaNTATTTTAATCTTACGTCGTCGAAAGATTCAGC
AtaaattattttcatgtttGGCTTTAAGTGTGGGTTATGTGTTGAATGCT
TGAGTTCTTTCACATTCACAAATAAGCCATTGCCAAATTATGGCAATTTC
CACAATCGTTTAAATGCATAAAAGTTTGCGTGGTTGTGTCGTTGTGTACA
ATACCTCAATAGTGTAACACCTATATTGTTTCTATTACAGGGGAAAGGTG
TTTCACGCATTCAACTGATGCATCATGGGTACCCACAGTTCAAGAAAACA
TATCAGAGAATACTACGTTACCTCTTTACGTCCATGATACTTCAAATTTA
CCCAATGATATTCAGAATGTTTCGTGGAGTTGCCAAACGGACAAAGTAGT
TTGGGTTTATAACGGGAGTATCATTTTGAAAGAGAGTTTTGCAAGTGATA
TCAAGATAAACAGCAATGGAAACAAAACTTTACAGGTATGTTTTCGCTCT
CTTAGAGCGACCGTAATGCAATGGTAGAACATCTGGCTATGTTGGTGTGG
TTGTGTGTTCAACCCCCAGCGGGGTCATACC Coding sequence (CDS) from alignment at sc0000521:19263..23393+ >TCONS_00025089 ID=TCONS_00025089|Name=TCONS_00025089|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at sc0000521:19263..23393+ (Clytia hemisphaerica)
ATGTCTACATGGTTGATGCTTTTGCAATTTGCATTCTTCATAACGTTATC
TTTTTGTGGCAATGAATTGCACATCATCAATGAGAGGAGACcagaaaacc
aaaaacatttcaCCTCATCTatagacttttttacaaacaaagATAAAGGG
AATAGAGATTTCTGTAACAGTTTGAATGCAACTTGTGTCCATAAAGAAAT
TTGTGATAAATGTCGGTGTGACAAGGATTTCATATGGCTGGATTATACTC
AAGGATGCAAGGGTCAACAATATTTGTATAACATTACTAATGGGGAAAGG
TGTTTCACGCATTCAACTGATGCATCATGGGTACCCACAGTTCAAGAAAA
CATATCAGAGAATACTACGTTACCTCTTTACGTCCATGATACTTCAAATT
TACCCAATGATATTCAGAATGTTTCGTGGAGTTGCCAAACGGACAAAGTA
GTTTGGGTTTATAACGGGAGTATCATTTTGAAAGAGAGTTTTGCAAGTGA
TATCAAGATAAACAGCAATGGAAACAAAACTTTACAGGTATGTTTTCGCT
CTCTTAGAGCGACCGTAATGCAATGGTAGATGTCTACATGGTTGATGCTT
TTGCAATTTGCATTCTTCATAACGTTATCTTTTTGTGGCAATGAATTGCA
CATCATCAATGAGAGGAGACcagaaaaccaaaaacatttcaCCTCATCTa
tagacttttttacaaacaaagATAAAGGGAATAGAGATTTCTGTAACAGT
TTGAATGCAACTTGTGTCCATAAAGAAATTTGTGATAAATGTCGGTGTGA
CAAGGATTTCATATGGCTGGATTATACTCAAGGATGCAAGGGTCAACAAT
ATTTGTATAACATTACTAATGGGGAAAGGTGTTTCACGCATTCAACTGAT
GCATCATGGGTACCCACAGTTCAAGAAAACATATCAGAGAATACTACGTT
ACCTCTTTACGTCCATGATACTTCAAATTTACCCAATGATATTCAGAATG
TTTCGTGGAGTTGCCAAACGGACAAAGTAGTTTGGGTTTATAACGGGAGT
ATCATTTTGAAAGAGAGTTTTGCAAGTGATATCAAGATAAACAGCAATGG
AAACAAAACTTTACAGGTATGTTTTCGCTCTCTTAGAGCGACCGTAATGC
AATGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025089-exon-sc0000521-1491911889:19263..19700 | TCONS_00025089-exon-sc0000521-1491911889:19263..19700 | Clytia hemisphaerica | exon |
| TCONS_00025089-exon-sc0000521-1510915933:19263..19700 | TCONS_00025089-exon-sc0000521-1510915933:19263..19700 | Clytia hemisphaerica | exon |
| TCONS_00025089-exon-sc0000521-1575043694:19263..19700 | TCONS_00025089-exon-sc0000521-1575043694:19263..19700 | Clytia hemisphaerica | exon |
| TCONS_00025089-exon-sc0000521-1491911889:23053..23393 | TCONS_00025089-exon-sc0000521-1491911889:23053..23393 | Clytia hemisphaerica | exon |
| TCONS_00025089-exon-sc0000521-1510915933:23053..23393 | TCONS_00025089-exon-sc0000521-1510915933:23053..23393 | Clytia hemisphaerica | exon |
| TCONS_00025089-exon-sc0000521-1575043694:23053..23393 | TCONS_00025089-exon-sc0000521-1575043694:23053..23393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:19263..23393 + |
Blast
The following BLAST results are available for this feature:
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