TCONS_00025091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025091
Unique NameTCONS_00025091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025091 ID=TCONS_00025091|Name=TCONS_00025091|organism=Clytia hemisphaerica|type=transcript|length=1892bp
ATGAGGTTGGCCAGcaattagctcaaaaaaagaaaaaaaagacatttatA
ACGCAATCATCAGGAAAGGTTTCTTGGCATTAGTTGTTTAGTGTTGTTTG
GGATAGGTAGTTGGTTTAAAAGTTGTGTCCTCTTTGTGTATCTTCTTCTT
CTGGTGTGGGAATCATGACAACAATTAGGCCACAACAAAATAATGATGAC
GATGACGATATAATGGACATTGTAAAACCAGTCGTGATCGTTGGATCCAT
CGTTCTAGTTCTTGTTGGtgtttttgtttacattatGTACAAACGAAGGA
AATACATCAAGGAACAgaaagaaagaaagatatcTGAAGCACAAGCTCCG
CTACCCGGCTGGATGAATCATGCAGCGAGAAATGCTGCAAAAATGTCAAC
GGTGACAATACTCAGTGAAGACGTATTATACGAACAACCGAACGAAATGT
CCATAAAAGCCGATGCATTAGCCAATCACAACAAAGCTTTTGACGAAGAC
GAAGAGGATTCCATCTCTAACAAATCGACTAATGaccaaaacaacaaaga
caatacAACTAATCATATCcataataacaataacaatgGCAGTATTAAAA
AAGATGATTCTCCTAAAATTGAAGATGTAGAGCTTAAGGAATCTCCTAAG
ACAAACAATATCTCAAATGGGCATGTGTCACCACTTAAGGACGATTCAGT
AGACAGCCCACTTGATCAGCTTCAAGAGACAGAGATCTCTAATGATACTG
TAGATAGCCCACTTGATCACACTGAAGAGACTCTAATACCTGACGATACT
GTAATTCATATTCCCGATAACGATGACAGCGATGACAGTGACTCAGATTC
AGAAATTGGAGAACCGATAGGAAATTCAACTAGACAGtcagatgaaaatg
aagatgcaAAAACGATGGTCCATGATATCAGTGGATCTTCCTTACCATCT
CTGAGTGGCTCATTAGTTAATGATGATTTCTTCGGACAAATGATGAATGA
ATACGATCGTATAAATACGTTACCGAGGAAATAACAAGATAGTTGATCAA
ATGGTAAATCCATCAGCTGGTCAAAATCGATCACAAATcgtcaaaaaaat
tgtttggcgTAATACAGCGGaccctctaattcgatcttcaagggaccaag
aatttccttcgaattagagaaagattctaTCATagatagaaagattcgaa
tagtagaggttcgaattatagagagttgaTAGTACTTCTGCTTGGTAGTA
ATATCAATGTTGGGAAGACCAATAAATCTGTCTTCCAATGAAACTTTAAT
GACAGATTAACTGGATAACACCCAATTTACACAGCCGAAAATCAAGTAAT
GTTAACCTTTCTCCAAGAGACTCATTTGATGAAAGCAAGTACATTCAAGG
AATGCTTCTCAGTAAGACCCGAGAAGGAGCATATAAGGGTAAGAAGAAGA
AGCaaagtttttaaatattatatttatatttcTTTTAACATTAAATCTGA
GGgttgaatatatattttatatttcgGAGTAATTAATAAAAGGGGTGAGT
AAATCATTAAATGACAAAAACGAGGCCATAAGAAAAGTTACGCTAATGAA
TGGATAGGGCGGGCTGGTTCCAAAATCCTTTTCACAATATTTGATGTAAT
ATCAAGAAAATATCTTTAATTCACTCCCACTCCTATTGAAACAACCATTC
CAGGGGGTTTTCACAATTATTTTCACTGTTTCATAGGGTGGGTTTACATC
TGAAGGGGAAAATTGATTAACCATCATTCCTTTGTTGATAACAATGCAGA
ACATTTAAACCAAACAAAAGCTCGAAACCACTTTTACGTAGTCTTTTACA
AATATCCAATCCTAACCAATGAGAATGCTTAGGTAAAATCAA
Run BLAST on NCBI

transcript from alignment at sc0000521:30211..34833+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025091 ID=TCONS_00025091|Name=TCONS_00025091|organism=Clytia hemisphaerica|type=transcript|length=4623bp|location=Sequence derived from alignment at sc0000521:30211..34833+ (Clytia hemisphaerica)
ATGAGGTTGGCCAGcaattagctcaaaaaaagaaaaaaaagacatttatA
ACGCAATCATCAGGAAAGGTTTCTTGGCATTAGTTGTTTAGTGTTGTTTG
GGATAGGTAGTTGGTTTAAAAGTTGTGTCCTCTTTGTGTATCTTCTTCTT
CTGGTGTGGGAATCATGACAACAATTAGGCCACAACAAAATGTACGGGTT
AGTTTTATTCGTATaagagtttttgtttttgacaatttttttaaagtttc
aaacttattttcaaCTTCGTGGCTTTTCTTAAGGTTGCACACTTCTAAAT
CACCGTAATTTACCTTTAGTATACACATTAGCCCTTCAACTCACAAAAGA
TACAAATCAAGAGTTTACAAGAGTGAAAATGGTGTCAGAATCTGTCTTTC
AATGANGACAAATCAAAAGTTTACAAGAGTGAAAATAGTGTCAGAAGACT
TTAGAGATTTGACATCAATCCTACCAAGTAAATTTGACTCAATCTCCTCA
CACTTTAAGGGTTTCATTCGTGTTTTAACAATGAGATCATCAGCTTGGTT
GAAGAATATAAGCTTCACCTCACACCCTCTCCAATGTGGCAATGtataat
caaaagaatttgaattcttttcaaTTTGTTCAAAATCCTTCCCATAGAAT
GATGACGATGACGATATAATGGACATTGTAAAACCAGTCGTGATCGTTGG
ATCCATCGTTCTAGTTCTTGTTGGtgtttttgtttacattatGTACAAAC
GAAGGAAATACATCAAGGAACAGTAagtaaattttcatttattaagATTA
ATGAAATTGGACATTTCAaatcattttgttttttgttaaaattgctCATC
TAGATTTCGAATGCAGTTGAGCGTCTCTCTAGTTCGATGCTCAAAGGAAT
AAAAACTCTTCGATTTAGAGAAAGTTTCGAAtcacagagagtaatttaaa
caaCCTTCCAGCTGAGGGaagcaatattttagttcgaattacagaaggaT
TTGGATAACAGAGGTATAAATTAAAGAAAGTTGACTGTAGATGTTCTGAA
GAAAATATATAGCATAATCTAGCCTGTCATGTATTTCATTTTCGAATTGG
ACTAATAATTATTTAGAAATTCAAAGTATTTCACCAATACTGTGCCAGCA
TACCAAATAAattattgttattgattacgTGTGCTAAAGCCAAATGTTGG
TCAAAGAAGAAGAATTCAAGATTGAATTGTGTTATCAGTAGATGATACAT
AATTTTCAAATTAGTAAAATACATCTGATTAATAAAAAGCATGTGTTGTT
GTATACAAACTTTCGAATCTTATCTTTTTAATGAGGTGTATTGACGTCAT
GCTTCCTTCCGATAGTGATTTCTAACCAAGAAAATTTATTAAATCGACTT
CTTGattagttaaaaaaaaatggcCAGCCTTCGATGTTGCGAAATTTATC
TTGactcaaaaaaacgaaaactaaattgttttaaaaaccCTGATTTTCAA
AACCAATTTTAGGGTATTTGCACCAAATAAGCAAGACTAAGACTTATCGT
AAGCATTTCCTTTCTTTAAATCTATGTTACTTAAAATctccttttatttt
ttcataggaaagaaagaaagatatcTGAAGCACAAGGTATGTCCGATCTT
TCGTTCTATTGATTATTCATATATTCTACAGTATATAGTCAAGATTATGT
TTTGACCTTTTCGGAAAAGATATTTACTATAGGCCTATTGTATTATACga
tttttcaatcatttcagCTCCGCTACCCGGCTGGATGAATCATGCAGCGA
GAAATGCTGGTATGTATTACTTGAAATATTTCTACTCCCGCAGGTTacca
atttctttaaaaacaatctAGTACTGTAGAGAGGGCTTGGACTTCACTAC
TCTATGCTGCCTATCTATTTGGATTTAGTGACAGCAGGCTGCTCAGCCCA
TTCTCACAATTGTGTTAACGCGACTAGGCCTCCTGTCAGCAACCTTGGAC
TGACTGCCCTGTTCCCCTCACATATCATGAGTTGACCCGTGTGAAGTTTG
TTGACTCACCAAATGAAACACTACGAGTCGGGATCGAACCATGATCTCCT
GTATAGGAATCAAACTtgatgaccactataccacggcgCCTAGCGCAtcg
aatatcttttcaaaatagTTTTTGCTTTAGTaataatttaacatttaatT
TTTCATGAATCTTCAGCAAAAATGTCAACGGTGACAATACTCAGTGAAGA
CGTATTATACGAACAACCGAACGAAATGTCCATAAAAGCCGATGCATTAG
CCAATCACAACAAAGCTTTTGACGAAGACGAAGAGGTAGGGAAGGttttt
taagtttaacttttGAGAAGCGAGCGGAAGAAGAAGGAAGTTATTTTTTT
TGGTTACAACTTAATGATTGAAGGTTTACAGAATATGGATACAGTTAGAt
accggcgtaaaaagggtcgATAATGTGCACAAATTGTCTCATGTCTTCCT
TTAAATTCAATTGAAGCATTTACCATAAGTAACTTTTTCCATTCGATTCC
TAGTGTTGATCTTTTTGTTATTATGTCTGTTTTGTTACTTAGCATTGAGC
TTTGTGAGCCAACCTTCATTAAGTGAGTGACCGCCTATAACCCTCTCATC
GTCTAGTAACCAGGAAACATCATCCGTAATTTCAACTAATCTACTAATAT
CACCAAATCAATTAATCATCAAATATACATACACCGCTTAATTATTGAGG
TTTATGCAAAAAGTTCCTTGTATTTAATATTTGCGCAATATCTTTACGCA
AACAAGGTAAATTTTCACCGCTAATTCTTCCACTAACGTTTGCTgctatt
tcaaaacttttgactGTTTTCAATAATCAAGAGTATCTCTAAAGGTTGGG
TGATGAAAACTCATCTACTATTGGCGGATCTTAGGGGGGTTCATTTCCAT
TTCATTCATTGATTTTCGAATCTTCAAATCGGGCAAAACTATGACTGGTC
CTCACAGTGTCACTAAATTTCAGCAACCCTCCCCCAATATAGagtgcttc
ctacggcactgtatgATGGTGATTCTTCATTCTCTTATAATAGGCAGTAT
GGCCCACTATGAAACATTCtccgtcataaattttgaacaCTCTAAAATCC
ACCACTATGACTACTCTATCGTTGCTGATAACTTTTGTTCTTTTCAATCA
AACGATACTTGACATATTGACCTTTCAATTTTCCCAGGATTCCATCTCTA
ACAAATCGACTAATGaccaaaacaacaaagacaatacAACTAATCATATC
cataataacaataacaatgGCAGTATTAAAAAAGATGATTCTCCTAAAAT
TGAAGATGTAGAGCTTAAGGAATCTCCTAAGACAAACAATATCTCAAATG
GGCATGTGTCACCACTTAAGGACGATTCAGTAGACAGCCCACTTGATCAG
CTTCAAGAGACAGAGATCTCTAATGATACTGTAGATAGCCCACTTGATCA
CACTGAAGAGACTCTAATACCTGACGATACTGTAATTCATATTCCCGATA
ACGATGACAGCGATGACAGTGACTCAGATTCAGAAATTGGAGAACCGATA
GGAAATTCAACTAGACAGtcagatgaaaatgaagatgcaAAAACGATGGT
CCATGATATCAGTGGATCTTCCTTACCATCTCTGAGTGGCTCATTAGTTA
ATGATGATTTCTTCGGACAAATGATGAATGAATACGATCGTATAAATACG
TTACCGAGGAAATAACAAGATAGTTGATCAAATGGTAAATCCATCAGCTG
GTCAAAATCGATCACAAATcgtcaaaaaaattgtttggcgTAATACAGCG
Gaccctctaattcgatcttcaagggaccaagaatttccttcgaattagag
aaagattctaTCATagatagaaagattcgaatagtagaggttcgaattat
agagagttgaTAGTACTTCTGCTTGGTAGTAATATCAATGTTGGGAAGAC
CAATAAATCTGTCTTCCAATGAAACTTTAATGACAGATTAACTGGATAAC
ACCCAATTTACACAGCCGAAAATCAAGTAATGTTAACCTTTCTCCAAGAG
ACTCATTTGATGAAAGCAAGTACATTCAAGGAATGCTTCTCAGTAAGACC
CGAGAAGGAGCATATAAGGGTAAGAAGAAGAAGCaaagtttttaaatatt
atatttatatttcTTTTAACATTAAATCTGAGGgttgaatatatatttta
tatttcgGAGTAATTAATAAAAGGGGTGAGTAAATCATTAAATGACAAAA
ACGAGGCCATAAGAAAAGTTACGCTAATGAATGGATAGGGCGGGCTGGTT
CCAAAATCCTTTTCACAATATTTGATGTAATATCAAGAAAATATCTTTAA
TTCACTCCCACTCCTATTGAAACAACCATTCCAGGGGGTTTTCACAATTA
TTTTCACTGTTTCATAGGGTGGGTTTACATCTGAAGGGGAAAATTGATTA
ACCATCATTCCTTTGTTGATAACAATGCAGAACATTTAAACCAAACAAAA
GCTCGAAACCACTTTTACGTAGTCTTTTACAAATATCCAATCCTAACCAA
TGAGAATGCTTAGGTAAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014110XLOC_014110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025091-exon-sc0000521-1491911889:30211..30401TCONS_00025091-exon-sc0000521-1491911889:30211..30401Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:30211..30401TCONS_00025091-exon-sc0000521-1510915933:30211..30401Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:30211..30401TCONS_00025091-exon-sc0000521-1575043694:30211..30401Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1491911889:30858..30982TCONS_00025091-exon-sc0000521-1491911889:30858..30982Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:30858..30982TCONS_00025091-exon-sc0000521-1510915933:30858..30982Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:30858..30982TCONS_00025091-exon-sc0000521-1575043694:30858..30982Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1491911889:31818..31846TCONS_00025091-exon-sc0000521-1491911889:31818..31846Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:31818..31846TCONS_00025091-exon-sc0000521-1510915933:31818..31846Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:31818..31846TCONS_00025091-exon-sc0000521-1575043694:31818..31846Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1491911889:31978..32019TCONS_00025091-exon-sc0000521-1491911889:31978..32019Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:31978..32019TCONS_00025091-exon-sc0000521-1510915933:31978..32019Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:31978..32019TCONS_00025091-exon-sc0000521-1575043694:31978..32019Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1491911889:32427..32545TCONS_00025091-exon-sc0000521-1491911889:32427..32545Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:32427..32545TCONS_00025091-exon-sc0000521-1510915933:32427..32545Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:32427..32545TCONS_00025091-exon-sc0000521-1575043694:32427..32545Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1491911889:33448..34833TCONS_00025091-exon-sc0000521-1491911889:33448..34833Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1510915933:33448..34833TCONS_00025091-exon-sc0000521-1510915933:33448..34833Clytia hemisphaericaexon
TCONS_00025091-exon-sc0000521-1575043694:33448..34833TCONS_00025091-exon-sc0000521-1575043694:33448..34833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:30211..34833 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505921	0.431684	0.190943	0	0.227421	0	3.52323	1.88115	1.2605	2.38914	0.918348	1.32935	14.7249	16.717	6.32228	10.9166	3.26566	4.96758	6.66664	7.38959	4.86775	2.54132	1.78126	1.37582	2.15767	4.93485	0	0	0.0701917	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top