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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025093 ID=TCONS_00025093|Name=TCONS_00025093|organism=Clytia hemisphaerica|type=transcript|length=676bp
AATAAAACTAAAATTAAACAGCATACAGAATGAAGTACAATATTGCCTTC
ATCTTACTGGTGAAATCCATGTTGCACTTTTGTCAAGGATATAGTCAACA
GCTAGCGAGTATATCGTTTGACAAGATTAAAGGATCGACTTTTTATGGAT
TGGATCGATTCAAGGGTGAATATAGTGCGGAATATTGTTTGAGTAAGAAT
GCCGTTTGTGATAGATTGTTCAGTGGCACTTGCAGTTGGTGTATTTGCAA
GGATATGATGACCTTTGTTTCGTATCGAGATGGATGCAAGGATAAAAGAG
ATGCTGATGTTATTCTGGGAGTCTCAGGACAAATGTGCTTCGGAGTTCAA
AATAACCAACGAGTTTACCCAATGTTCACCGTGGATGAATTGTTTAGCCA
ATGGTTTATATTGATTCCTCAAACGACATACTATGAAATCCCTACGCAAG
ACAGCACAGTACATTATGATGCTAATTTATCTCAATGTTGGGCTAAAGAA
GTTTACTTAATCGATCTAAATGGAAAAAGGAGTCTACTTTGGTGTAATTA
CAACCAAGAAAAATTACGGATTTTTAATGATGGAAGATACTGGATGAAGG
CATCACAATCTGCTTCAAAAGACGAATTCCTTCAACATTCTGGTAGACTT
ATATTAGTGAACATCGACTGCAAACA Run BLAST on NCBI protein sequence of TCONS_00025093-protein >TCONS_00025093-protein ID=TCONS_00025093-protein|Name=TCONS_00025093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MKYNIAFILLVKSMLHFCQGYSQQLASISFDKIKGSTFYGLDRFKGEYSA
EYCLSKNAVCDRLFSGTCSWCICKDMMTFVSYRDGCKDKRDADVILGVSG
QMCFGVQNNQRVYPMFTVDELFSQWFILIPQTTYYEIPTQDSTVHYDANL
SQCWAKEVYLIDLNGKRSLLWCNYNQEKLRIFNDGRYWMKASQSASKDEF
LQHSGRLILVNIDCK Run BLAST on NCBI transcript from alignment at sc0000521:37080..38886+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025093 ID=TCONS_00025093|Name=TCONS_00025093|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at sc0000521:37080..38886+ (Clytia hemisphaerica)
AATAAAACTAAAATTAAACAGCATACAGAATGAAGTACAATATTGCCTTC
ATCTTACTGGTGAAATCCATGTTGCACTTTTGTCAAGGATATAGTCAACA
GCTAGCGAGTATATCGTTTGACAAGATTAAAGGATCGACTTTTTATGGAT
TGGATCGATTCAAGGGTGAATATAGTGCGGAATATTGTTTGAGTAAGAAT
GCCGTTTGTGATAGATTGTTCAGTGGCACTTGCAGTTGGTGTATTTGCAA
GGATATGATGACCTTTGTTTCGTATCGAGATGGATGCAAGGATAAAAGAG
ATGCTGATGTTATTCTGGGAGGTTTGTTTTGTAATCTCGTCCCCGTGCAT
CCCatgctttatttacgttactgattgacgctatcagtaagcatcagaAA
GctaataatacgcagggaacgaggttggtttGTTTTGTAATCTATCTTTA
CCAGTAGCTAGGTGGGTCGACCGAAGCTGGGGAGACAATTTTAAGAAGTT
GggattttggcgcccctttttaaaattaaaaaaccttTGCGTGTAAAACA
AAAAGGGGAGCCAAAATGGTTAATCAGAAACAAAATCGGCTGTCACAACA
CTACTGATCTTTGCATCAAATACGTATTATCTATGTTTCTAATGTGAGGA
GATAAGAATCGCGGCCTAATTTCTTATTTGCATATtaactttaaaagaaa
aaactttcacGGATTTCGCGAAAACAATAAATTCGCGATAAATTGCAAAA
GACTGATTTCACGGAAGTTTATTCTCGCGAAAAAATCCTTTCCCTTAAAA
TCTACCCTAAATCAATGAGCTTGACCATGAAAcaacttttgatattttga
aataagtcAAGTTTTACCCACTATTtaataaaaatcaatcaaaaaatcCG
GCttagaaaagaaacaaaaattagcAAAACGCGAGCGTTTTCTTTCATGA
ATTTTTCCAAAAGCTAATTCGTGCAAGTTAATTGTCGCAAATCTTACCat
tcttaaagttttttttcctatAAATCTCTTTTAATCCATTTCATAGTCTC
AGGACAAATGTGCTTCGGAGTTCAAAATAACCAACGAGTTTACCCAATGT
TCACCGTGGATGAATTGTTTAGCCAATGGTTTATATTGATTCCTCAAACG
ACATACTATGAAATCCCTACGCAAGACAGCACAGTACATTATGATGCTAA
TTTATCTCAATGTTGGGCTAAAGAAGTTTACTTAATCGATCTAAATGGAA
AAAGGAGTCTACTTTGGTGTAATTACAACCAAGAAAAATTACGGATTTTT
AATGATGGAAGATACTGGATGAAGGTAAGTTCTATGTCATGTGGAAAATG
TGTTGTTTTGTTCTTCTAATGCAATCCTTCCGTTTTGTACCCAAATTTTC
CTTTTGGAAATAATCGGCAAGCACCGTTTAGAATTTTTCCACAGTGGAAA
ATGGGATGAACATTtctattaaaaattaaaaatttaaaatttaaaatcac
aATAAGGATTGTTCTTAGGTCTAGAAATGCAGTGGAGATATCTATGGAAT
GCAATCATTTTCCCATGAATTTCAAATCTAGTTGAAATCAAatagtcaat
ttcccagtggagaTGAAACTGTAAGGCAATTTTCCCAACAGGGACGTCCA
AAGTTCCCAGTGAATCTGAAGTCCCAGTCGGTCTGTGACACGAAGGTTTT
TAAATTTAACAACTTTTTCATTTATCAAAGGCATCACAATCTGCTTCAAA
AGACGAATTCCTTCAACATTCTGGTAGACTTATATTAGTGAACATCGACT
GCAAACA Coding sequence (CDS) from alignment at sc0000521:37080..38886+ >TCONS_00025093 ID=TCONS_00025093|Name=TCONS_00025093|organism=Clytia hemisphaerica|type=CDS|length=1935bp|location=Sequence derived from alignment at sc0000521:37080..38886+ (Clytia hemisphaerica)
ATGAAGTACAATATTGCCTTCATCTTACTGGTGAAATCCATGTTGCACTT
TTGTCAAGGATATAGTCAACAGCTAGCGAGTATATCGTTTGACAAGATTA
AAGGATCGACTTTTTATGGATTGGATCGATTCAAGGGTGAATATAGTGCG
GAATATTGTTTGAGTAAGAATGCCGTTTGTGATAGATTGTTCAGTGGCAC
TTGCAGTTGGTGTATTTGCAAGGATATGATGACCTTTGTTTCGTATCGAG
ATGGATGCAAGGATAAAAGAGATGCTGATGTTATTCTGGGAGTCTCAGGA
CAAATGTGCTTCGGAGTTCAAAATAACCAACGAGTTTACCCAATGTTCAC
CGTGGATGAATTGTTTAGCCAATGGTTTATATTGATTCCTCAAACGACAT
ACTATGAAATCCCTACGCAAGACAGCACAGTACATTATGATGCTAATTTA
TCTCAATGTTGGGCTAAAGAAGTTTACTTAATCGATCTAAATGGAAAAAG
GAGTCTACTTTGGTGTAATTACAACCAAGAAAAATTACGGATTTTTAATG
ATGGAAGATACTGGATGAAGGCATCACAATCTGCTTCAAAAGACGAATTC
CTTCAACATTCTGGTAGACTTATATTAGTGAACATCGACTGCAAAATGAA
GTACAATATTGCCTTCATCTTACTGGTGAAATCCATGTTGCACTTTTGTC
AAGGATATAGTCAACAGCTAGCGAGTATATCGTTTGACAAGATTAAAGGA
TCGACTTTTTATGGATTGGATCGATTCAAGGGTGAATATAGTGCGGAATA
TTGTTTGAGTAAGAATGCCGTTTGTGATAGATTGTTCAGTGGCACTTGCA
GTTGGTGTATTTGCAAGGATATGATGACCTTTGTTTCGTATCGAGATGGA
TGCAAGGATAAAAGAGATGCTGATGTTATTCTGGGAGTCTCAGGACAAAT
GTGCTTCGGAGTTCAAAATAACCAACGAGTTTACCCAATGTTCACCGTGG
ATGAATTGTTTAGCCAATGGTTTATATTGATTCCTCAAACGACATACTAT
GAAATCCCTACGCAAGACAGCACAGTACATTATGATGCTAATTTATCTCA
ATGTTGGGCTAAAGAAGTTTACTTAATCGATCTAAATGGAAAAAGGAGTC
TACTTTGGTGTAATTACAACCAAGAAAAATTACGGATTTTTAATGATGGA
AGATACTGGATGAAGGCATCACAATCTGCTTCAAAAGACGAATTCCTTCA
ACATTCTGGTAGACTTATATTAGTGAACATCGACTGCAAAATGAAGTACA
ATATTGCCTTCATCTTACTGGTGAAATCCATGTTGCACTTTTGTCAAGGA
TATAGTCAACAGCTAGCGAGTATATCGTTTGACAAGATTAAAGGATCGAC
TTTTTATGGATTGGATCGATTCAAGGGTGAATATAGTGCGGAATATTGTT
TGAGTAAGAATGCCGTTTGTGATAGATTGTTCAGTGGCACTTGCAGTTGG
TGTATTTGCAAGGATATGATGACCTTTGTTTCGTATCGAGATGGATGCAA
GGATAAAAGAGATGCTGATGTTATTCTGGGAGTCTCAGGACAAATGTGCT
TCGGAGTTCAAAATAACCAACGAGTTTACCCAATGTTCACCGTGGATGAA
TTGTTTAGCCAATGGTTTATATTGATTCCTCAAACGACATACTATGAAAT
CCCTACGCAAGACAGCACAGTACATTATGATGCTAATTTATCTCAATGTT
GGGCTAAAGAAGTTTACTTAATCGATCTAAATGGAAAAAGGAGTCTACTT
TGGTGTAATTACAACCAAGAAAAATTACGGATTTTTAATGATGGAAGATA
CTGGATGAAGGCATCACAATCTGCTTCAAAAGACGAATTCCTTCAACATT
CTGGTAGACTTATATTAGTGAACATCGACTGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025093-exon-sc0000521-1491911889:37080..37400 | TCONS_00025093-exon-sc0000521-1491911889:37080..37400 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1510915933:37080..37400 | TCONS_00025093-exon-sc0000521-1510915933:37080..37400 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1575043694:37080..37400 | TCONS_00025093-exon-sc0000521-1575043694:37080..37400 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1491911889:38126..38403 | TCONS_00025093-exon-sc0000521-1491911889:38126..38403 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1510915933:38126..38403 | TCONS_00025093-exon-sc0000521-1510915933:38126..38403 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1575043694:38126..38403 | TCONS_00025093-exon-sc0000521-1575043694:38126..38403 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1491911889:38810..38886 | TCONS_00025093-exon-sc0000521-1491911889:38810..38886 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1510915933:38810..38886 | TCONS_00025093-exon-sc0000521-1510915933:38810..38886 | Clytia hemisphaerica | exon |
| TCONS_00025093-exon-sc0000521-1575043694:38810..38886 | TCONS_00025093-exon-sc0000521-1575043694:38810..38886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:37080..38886 + |
Blast
The following BLAST results are available for this feature:
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