TCONS_00025094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025094
Unique NameTCONS_00025094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025094 ID=TCONS_00025094|Name=TCONS_00025094|organism=Clytia hemisphaerica|type=transcript|length=316bp
CAACCGAAGGTCCTGCCAATCTCAcaacacacgcaacaaaaaCCATAACA
AATCTTCGAACGATAACGAATCTACCACATACAACCACCCACAGAAACCA
AACAACAATAGTACTTCCTGACAAAACCATCACTGGTCAATCACGTGACA
CTGGAGATGACACTCAAACTTTAATCATCGTTGGAGTAATAGCCGTGTTT
CTCATAGTTCTGGTGACGTTGCTCATCTTTGTTTTCttcagaaaacaaaa
gaaacaaaaGAATAACAACGAAAGATCAATCTCAATGCGAAAACTAGAAG
GTATGTCTGTTGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00025094-protein

>TCONS_00025094-protein ID=TCONS_00025094-protein|Name=TCONS_00025094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
TEGPANLTTHATKTITNLRTITNLPHTTTHRNQTTIVLPDKTITGQSRDT
GDDTQTLIIVGVIAVFLIVLVTLLIFVFFRKQKKQKNNNERSISMRKLEG
MSVA
Run BLAST on NCBI

transcript from alignment at sc0000521:39243..39795+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025094 ID=TCONS_00025094|Name=TCONS_00025094|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0000521:39243..39795+ (Clytia hemisphaerica)
CAACCGAAGGTCCTGCCAATCTCAcaacacacgcaacaaaaaCCATAACA
AATCTTCGAACGATAACGAATCTACCACATACAACCACCCACAGAAACCA
AACAACAATAGTACTTCCTGACAAAACCATCACTGGTCAATCACGTGACA
CTGGAGATGACACTCAAACTTTAATCATCGTTGGAGTAATAGCCGTGTTT
CTCATAGTTCTGGTGACGTTGCTCATCTTTGTTTTCttcagaaaacaaaa
gaaacaaaagtaAATCATAATTTCCTTTTGTTCTAATGAATCTTACgatc
atttcattttttgactGTTTGTGAGGTACTGGCCTAGAGGTATATCTAAT
CTGTGTAAACGCAATATATAGTGCATTTTAAttatcaagatgctatatca
gAATAGCTCAACCAGACACTTGAGCTATACTCAACATAGGCAACAAATTG
GTTCACCGACAATTGCTTCAACCATGTACATTGTTTTGTTATTTAGGAAT
AACAACGAAAGATCAATCTCAATGCGAAAACTAGAAGGTATGTCTGTTGC
AAG

Coding sequence (CDS) from alignment at sc0000521:39243..39795+

>TCONS_00025094 ID=TCONS_00025094|Name=TCONS_00025094|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000521:39243..39795+ (Clytia hemisphaerica)
ACCGAAGGTCCTGCCAATCTCAcaacacacgcaacaaaaaCCATAACAAA
TCTTCGAACGATAACGAATCTACCACATACAACCACCCACAGAAACCAAA
CAACAATAGTACTTCCTGACAAAACCATCACTGGTCAATCACGTGACACT
GGAGATGACACTCAAACTTTAATCATCGTTGGAGTAATAGCCGTGTTTCT
CATAGTTCTGGTGACGTTGCTCATCTTTGTTTTCttcagaaaacaaaaga
aacaaaaGAATAACAACGAAAGATCAATCTCAATGCGAAAACTAGAAGGT
ATGTCTGTTGCAACCGAAGGTCCTGCCAATCTCAcaacacacgcaacaaa
aaCCATAACAAATCTTCGAACGATAACGAATCTACCACATACAACCACCC
ACAGAAACCAAACAACAATAGTACTTCCTGACAAAACCATCACTGGTCAA
TCACGTGACACTGGAGATGACACTCAAACTTTAATCATCGTTGGAGTAAT
AGCCGTGTTTCTCATAGTTCTGGTGACGTTGCTCATCTTTGTTTTCttca
gaaaacaaaagaaacaaaaGAATAACAACGAAAGATCAATCTCAATGCGA
AAACTAGAAGGTATGTCTGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014112XLOC_014112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025094-proteinTCONS_00025094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025094-exon-sc0000521-1491911889:39243..39501TCONS_00025094-exon-sc0000521-1491911889:39243..39501Clytia hemisphaericaexon
TCONS_00025094-exon-sc0000521-1510915933:39243..39501TCONS_00025094-exon-sc0000521-1510915933:39243..39501Clytia hemisphaericaexon
TCONS_00025094-exon-sc0000521-1575043694:39243..39501TCONS_00025094-exon-sc0000521-1575043694:39243..39501Clytia hemisphaericaexon
TCONS_00025094-exon-sc0000521-1491911889:39739..39795TCONS_00025094-exon-sc0000521-1491911889:39739..39795Clytia hemisphaericaexon
TCONS_00025094-exon-sc0000521-1510915933:39739..39795TCONS_00025094-exon-sc0000521-1510915933:39739..39795Clytia hemisphaericaexon
TCONS_00025094-exon-sc0000521-1575043694:39739..39795TCONS_00025094-exon-sc0000521-1575043694:39739..39795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:39243..39795 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6575	1.93959	1.50136	0.367213	6.25864	4.23914	1.70478	5.58598	4.46957	1.38407	3.35854	2.42855	3.08658	3.4344	1.31766	4.24214	2.2397	3.3159	2.11435	3.31877	0.961538	2.34502	1.14027	1.72779	2.84733	4.12941	0	0.48511	0.735878	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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