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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025095 ID=TCONS_00025095|Name=TCONS_00025095|organism=Clytia hemisphaerica|type=transcript|length=514bp
TACCAATATCAATGCTAAAACGAAACTTTTAATCGAAGAGGACACTTACC
AGCCAAAACAAAAGTTGACTTTAAAATCATATGAAGCCAAAGATATATGT
CGGAGAGTATACTAAAAAACAATAACTTGGGTAAATTCTTAATACCAAGG
AAACTTTAACCATCATGAGCAAGAAagtcagtttattattggtaattttg
attttggctaCTCGTTCGAACCCATTGAAAGTGAAAGTTAAACGGCAATA
TGGGCAATTTATTGGAAATGCAAACTTTCACATTTCGACAGATAAATTTG
CAAACTTTGAAGGAACTACACAATTTTGTAATTTGTTGAATTCTACCTGC
CATCGTCCTATCAAGGGTGAATGTAGCACTTGCAGATGTCGAAAAAATGA
AGACACATTTATCTCTTACAATGTTGGTTGCCAGTCATCCGACTATTTCA
AAGaaaaccTACTGATGTACCAAGAACCCAACAGCGACAAAGGTCCATAT
ATCATACCGACTGT Run BLAST on NCBI protein sequence of TCONS_00025095-protein >TCONS_00025095-protein ID=TCONS_00025095-protein|Name=TCONS_00025095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSKKVSLLLVILILATRSNPLKVKVKRQYGQFIGNANFHISTDKFANFEG
TTQFCNLLNSTCHRPIKGECSTCRCRKNEDTFISYNVGCQSSDYFKENLL
MYQEPNSDKGPYIIPT Run BLAST on NCBI transcript from alignment at sc0000521:45765..47153+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025095 ID=TCONS_00025095|Name=TCONS_00025095|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at sc0000521:45765..47153+ (Clytia hemisphaerica)
TACCAATATCAATGCTAAAACGAAACTTTTAATCGAAGAGGACACTTACC
AGCCAAAACAAAAGTTGACTTTAAAATCATATGAAGCCAAAGATATATGT
CGGAGAGTATACTAAAAAACAATAACTTGGGTAAATTCTTAATACCAAGG
AAACTTTAACCATCATGAGCAAGAAagtcagtttattattggtaattttg
attttggctaCTCGTTCGAACCCATTGAAAGTGAAAGTTAAACGGCAATA
TGGGCAATTTATTGGAAATGCAAACTTTCACATTTCGACAGATAAATTTG
CAAACTTTGAAGGAACTACACAATTTTGTAATTTGTTGAATTCTACCTGC
CATCGTCCTATCAAGGGTGAATGTAGCACTTGCAGATGTCGAAAAAATGA
AGACACATTTATCTCTTACAATGTTGGTTGCCAGTCATCCGACTATTTCA
AAGGTAGGTTTTTTTTACTCTTTCGCGAAagagcccagctggcacacaac
gttgtttcaacgtttatctaacgttcacaacgtccatttaacgttagatt
aacgaaacaacgttgtgtgctagctggaAGGATTTGGCTAACACAGtgga
gtttttttaactcgaactGCTTTAACTCGAATgcctccttaactcaaaca
agtttaatggtctcttcagttaacaatatctTATAAGCCCTACTccgtaa
ctcgaaatttcctcgAACAGTAAAagaactcgaacaaatttgtgcccCAC
GCGTGTGTGTTCAATTCAAgggggggttgtaggggttcgaaataccgttt
tcccgtcaaattttttgctgaatcccggaatcccaaaaattggaaaaata
ataacaccgtcacaccggcttgtacaaggcaaaaatgtacctaaataccg
tccccgtctgattttaaaataccgttttcccgtctcttttttcgtcaaat
cccgtaataacgtactaaaaaagggccaatcccgtcacaccgtaaaatca
caaatcccccccccccatccaagttatggagactccactgcaTATATGTT
GCACAAGTAGGACAAGatataacccagctggcacacaacgttgtttcgac
gtttttctaacgttcacaacgtccatataacgttagaaaaacgttgaaac
aactttgtgtgccagctgggaagttaaacttgtttgagttaaggaggcat
ttgaattttatgaaggttcgagttaaagagactccactgtattagCCTAA
ATTTGAAATTCATGGAAACCTGAACTAGTAGAAAGATGAGTCTTTAAAGT
AAGCTTCCgatatgttttgaaattttagaaaaccTACTGATGTACCAAGA
ACCCAACAGCGACAAAGGTCCATATATCATACCGACTGT Coding sequence (CDS) from alignment at sc0000521:45765..47153+ >TCONS_00025095 ID=TCONS_00025095|Name=TCONS_00025095|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000521:45765..47153+ (Clytia hemisphaerica)
ATGAGCAAGAAagtcagtttattattggtaattttgattttggctaCTCG
TTCGAACCCATTGAAAGTGAAAGTTAAACGGCAATATGGGCAATTTATTG
GAAATGCAAACTTTCACATTTCGACAGATAAATTTGCAAACTTTGAAGGA
ACTACACAATTTTGTAATTTGTTGAATTCTACCTGCCATCGTCCTATCAA
GGGTGAATGTAGCACTTGCAGATGTCGAAAAAATGAAGACACATTTATCT
CTTACAATGTTGGTTGCCAGTCATCCGACTATTTCAAAGaaaaccTACTG
ATGTACCAAGAACCCAACAGCGACAAAGGTCCATATATCATACCGACTAT
GAGCAAGAAagtcagtttattattggtaattttgattttggctaCTCGTT
CGAACCCATTGAAAGTGAAAGTTAAACGGCAATATGGGCAATTTATTGGA
AATGCAAACTTTCACATTTCGACAGATAAATTTGCAAACTTTGAAGGAAC
TACACAATTTTGTAATTTGTTGAATTCTACCTGCCATCGTCCTATCAAGG
GTGAATGTAGCACTTGCAGATGTCGAAAAAATGAAGACACATTTATCTCT
TACAATGTTGGTTGCCAGTCATCCGACTATTTCAAAGaaaaccTACTGAT
GTACCAAGAACCCAACAGCGACAAAGGTCCATATATCATACCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025095-exon-sc0000521-1491911889:45765..46217 | TCONS_00025095-exon-sc0000521-1491911889:45765..46217 | Clytia hemisphaerica | exon |
| TCONS_00025095-exon-sc0000521-1510915933:45765..46217 | TCONS_00025095-exon-sc0000521-1510915933:45765..46217 | Clytia hemisphaerica | exon |
| TCONS_00025095-exon-sc0000521-1575043694:45765..46217 | TCONS_00025095-exon-sc0000521-1575043694:45765..46217 | Clytia hemisphaerica | exon |
| TCONS_00025095-exon-sc0000521-1491911889:47093..47153 | TCONS_00025095-exon-sc0000521-1491911889:47093..47153 | Clytia hemisphaerica | exon |
| TCONS_00025095-exon-sc0000521-1510915933:47093..47153 | TCONS_00025095-exon-sc0000521-1510915933:47093..47153 | Clytia hemisphaerica | exon |
| TCONS_00025095-exon-sc0000521-1575043694:47093..47153 | TCONS_00025095-exon-sc0000521-1575043694:47093..47153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:45765..47153 + |
Blast
The following BLAST results are available for this feature:
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