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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025097 ID=TCONS_00025097|Name=TCONS_00025097|organism=Clytia hemisphaerica|type=transcript|length=768bp
CAACCCTTTTTGGAGTTTTGAGAAGGAcaataaaaattgtttgatgGAGA
ACAATTTATGGATATCGTTGTACCAACTACAAATATTCCAACCCTTTACC
CAACAAAACTATCGACAAGCAAACCAGATCAGTGTGACCTTTCAATGAAT
GACAAGAAAGATTGTGCATATTCTGGGATCGACGAAACAGGTTGCATTGG
AAGAAATTGTTGTTGGAACGCAATCCAAGGTCATAAGTATTGCTATCAAC
CAAAAGGTGAATGTGAGGTACCAGATGCAAACAAAATCAACTGTGGCCAT
GATACAATAAAAGACTCTGAATGTTATGCGAGAGGATGTTGCTGGCATCC
AAAATCAGGATATCATTATTGCTTTAATCCGAAAAGGAATACAACTctaa
caacaacaacgacaacgacGACGACAACAGCAGTACTAATACCAAAGACC
ACTACATCTACTACTACATCTACAACGACTTCAACAACGACCTCATCAAA
GATAACATCAACACTGAGATCAACAGCAATCGCTTCAACAGGCATGAAAA
CAACtcacattccaacaacttcacAGAGAACTAAAATCTCAACAATAATA
TCCACCGATCGATCAAAAACAACTCCAAGAAAAAATAATACATCCACAAT
ATTTTCGATACCGAAACGCACTACATCAGCAacctcaaaaacaaaattta
ccacAGTAGACAGCTCCACAAATGCAAACCAAGGAAAAAGTACAGTGTCA
TCAGCTCAAAGAGATTCA Run BLAST on NCBI transcript from alignment at sc0000521:47271..55283+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025097 ID=TCONS_00025097|Name=TCONS_00025097|organism=Clytia hemisphaerica|type=transcript|length=8013bp|location=Sequence derived from alignment at sc0000521:47271..55283+ (Clytia hemisphaerica)
CAACCCTTTTTGGAGTTTTGAGAAGGAcaataaaaattgtttgatggtaa
gttttttttcaaatcgttTGACAATAAGCTTCTCTATTGATATAAATCTT
AACCACGAGTATGATAGTGTATAAATATGCACTCTGATGACATACATATA
AGGATTCTATTCAACGTATATTCAGTGAAGTAATTATGGCAATTATCCAG
GATCTTGGATGAATGGCCCTACCATTTAAATCATAAGTAAGAAATATAGA
AAAGACTCTGTCAACGCACCTCAGTtgttagcgagtttatgtatgtgtgt
ttttcagcgacggagacggtaaggttctaatttgagtagatcctgaccag
ctgaggacgacggtaaatcagcacttttaccgtcctcgattttgcggggc
ggaattgctagtttttccaaatcgcttcagtcactttaccgtcctcaaaa
gggcaaatacataaactcgttacttgacctcggacGGTGCTTATCAGTGC
AGCCCTGACTGGTCGTTATTGTATTAATGTGCTTCACTATCTCCATTTAT
TGGAGCTGCTTATttggtcgtggcttcttcaaaAAGACGGAAGACACATC
TGAACTTATTTCGTATATTTCAGTCTCTAGTTCGTaactacagaccagac
tatattaagagaaaatcataAAAGAGTACTTGTTTCAAGCTTTAACCCTA
GCCCTAACTAATAATAACCCAATtactagccaatctgatacccaaccaca
cccaaaccacactcATACCCAACCCTATCAGGTCgtctgcaggtcctgac
actttTCTCGCATGCTGGATccgaaaaatatatttgtgtctttcgctttt
atgaagaagccttcacctgCTTACTTTGTGTATTCTTGTTTACTCTGTTC
ATCATTTAAACCTTTTGATAACAGTGCATTGACAAGAATGGAAGACCTTG
CGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCACAATCGATTGTC
GAGATAATAAAAATAATGTTACACAAAATATTCTCTTGATTAAAATAAAT
GGTAAGCCTATCAAAATACATTATAGAACGGATTGCAATGGTAATTCTAG
ACTTGATTTTAGATCACTTAGAACCATGAACCATTTCACAATCAGAACCC
ATAAACTCATCTTATTATGTGTTACCATTGATAAAAACTCATTTTCCCGT
AATTTCGAAGGTGAAAAATTTCAGATTAATTCATTGGGTGAttgatttct
attttaaatAAATGTGCAGGTTAAAATTTTTCATCACTTTGAATGATGTT
CATGAAAGCTTACAAGATAAAAATTCAGCTTCTATACGCTGTAATGCAAA
ATATGGTGTAAGAATTCCTTTCCAAATGGCtcaataaaactaaaatttac
ttgtCTTTACTTTAAGGAGAACAATTTATGGATATCGTTGTACCAACTAC
AAATATTCCAACCCTTTACCCAACAAAACTATCGACAAGCAAACCAGGTA
AGTCTTCGGAAGATTATGATTGTTGTTCGTCGTTAAAAAAATCGTTAGTG
AAAGAATATTCGCCAGCAAAAAATATTCGTAGGTAAGTGAAATCCGTCAT
TTGCCAAAAAGAATTCCTCAAGTAATGTCGGTTTTTTAGAGGGATTACAG
GCTGGAAAATACAAATGAAATTATTGCATTTTCTTCAGTTTCTTCTCTCG
TAAGTATAGCATAAAAGACTTATTTTTCATAGTTTTCTAATAACAACCGC
CTCTCCGACCGGATTGTGTGGATGTCCTGCGGGGCTAAGCATAGTCTGCG
TTTTCACTGGTTAAGATAAGTTTTTAGAAACGTCATAATTTAATTATTTA
ATGTTTTAAAGATTTCATACAGGCTAGGGTGAAATACAGACTACGCTAAA
CTAGCATGCATGCCAGTTGAACACTAAAACGATTGTATgtgggaaaagtg
agcgtaggagttaggtaaccgtagaaagaaaatttgtcaaaaggAAGGGT
TGAGAAATTCCCTTATCAGGACACTCTCTGCAGCCTTTCCTCGTTCTTCT
ATAAGGCTTCTGATTTAGCAAACGCCCACCGCCAATATGCTTCCGCCCTC
TGACATGTTTAATTAATAACCTGGTTGACTAGTCTTCGAGCTTACGAAAT
TCGCAGGATATCCGCAAACTCCGGTAGAGGTTTGCGGATGATTAGAAAGA
TATTTCATAAAGCTTGATTGAGGCAAGACAAGAGTTCGCAGAAATCCCAA
GAGCCTCTCATAATATAATCAAATAATATGTCAAAGTTTTACTAGGTTTT
TATAGAGagtaactttttaatttttaaaaaactgtttaaaGATCAGTGTG
ACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTGGGATCGACGAA
ACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATCCAAGGTCATAA
GTATTGCTATCAACCAAAAGGTAATTTGAACCGTTCTCACcataaataat
tttcaaatcttttgtttACCCTAATCTTTCCCCCTTTTACCAGGAGGTCT
TCACCCATTATCACTATAACTCATTTCAAGAGCTTTATGAGAACCTAAAA
CAATTTCTGACTGTTTTTACCACATTTTTTTACCCGTAATATCCGTCAGG
AAGGAGTTTATGGCGAAAATCCTTCATAAAACCCAATTAAAATCACGTAA
AATCCGCTAAATCTAAAAGATTCACAAAATTACTTAGAATGCTCATCGAA
TCCCAAGTAGGGTCGCAATAACatcaactttaaaaaatcaattccGTGTC
GGATACCTTTTTAGGGGAATTGGggaaaaaagtggaaaattttgaattta
gcaaaattcaagaaaaacgagtcccacgtaagttccatttttcgaacctc
agcggaacAACACCATAAGTCGGCAACATCCTCCCGAACTTCTCTTTTCC
TCTGGTATGAATAAAACCCCTTCTATTCTCATAAATTCAcctaaaatttt
tttacaacAGCTTCTTACATAGaagatgctatcgtccgtataatatatta
ctagatatagcttacactaagtgccacctaataataataaataaaatata
taataatatataaaatataagcataggttttggttacatgaagaaataat
gttaagattttctttttttctaaaaataactaTGTAAAGAATATATctaa
ataaattaaaatgattggttagttttaaaaatgacaatctaaacaatcca
tccaaataaaaatgatgggttTAAGCAGTTTTTCTATATGCAATAAATCT
ACATAAgtacaaatcacaacaatgactcctttataactactttaaactgc
atcccattaaacgaaACCTCCCCAATTTCTTGCTGGTTATCccgtaaaat
atatataggaaaaagattccagaaaagtatcaagaaACTTAGTgtggaaa
tgggaatcttatacaaaacaacggtacactggagtttttaatgattcaaa
atgaaaatcctgattagcaaaaggtgtatcaagatcggtgaagttcgACA
TTGAAGCttcatttattaccttgttgttGTTGCCCATttccgacggctta
ttagcagacgcccacacTAAAAAGCTTAAAGGGCAGGCAAATATAAATCA
TCCCATCGGATCAGCAATAActggaaccatttgagctacaaaaacattga
ttgaacttGATCGAACTGCGATATACTGGGATATAACTTtaatcaaactg
aagattttctggTAAAattcgattactgttcgatcaggttcggtaatcaa
acaccTAGCTAACCGCTTGATTTcgttcgatgaaatttgatggttcgata
acaaaaatcagtttgatagggttcggttgacatcgcctgggctggcatcg
gggaggaaaagctggaacttttttcttaaaCCAAACACATTGATTGAAAA
CCAATCAAACCCTATCAGataaaaactgtcatcaaacttataaaatcaaa
ctaatcaaaaaattCTCTTACCAAATCAGGCatggtaatcgaacagctac
cGTTTGATTTCGTTGGATAGTTCGACAGTTTGATtacaaaaaatgatttc
aattgacatgatttctaggCTAGGAAATAAAATATGTGGaaatacttgct
aaaactgactgtttgtcacaaccaGGTTACAACTGGTTAACATTTAACAC
TTAattatctggtgaaaaaagggaaaaaaagatcgtaaaagatcatacct
gtgctgtttgtagtttcgGTGAAGAAGAGGGCTTTTTGTGCCTTTgagtt
gttgtggaaaattaactctttttgtactatttactgagcattatcaattt
attggtgcattcactaactacacaaacataaaatacttggtagtaaacga
ataataaacctctttaaatactctgcaaaagaccagaaaacatgataaaa
attacagcagcaagtttcaaaagcatgtgcaatcaagcagACATTAAAAA
tgctcacgatgaatgtttacaaaggcttggttacacttcttacactagcg
tattttaattattaagaaaagcgctgttttttatctttgtgaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNacaaaaaaaaaaaaaagacggcgAAAATTTTTACCATC
TGCACAACctcgtgaagctatgaagccaCCTATGCTCGCTGTGCTCGCTC
GGTGGcaattatgatataacatagtttgtatattataaaacgtaatatgc
tGTGTTTTTACAACAGCTACCTCCGAAAAAAACTCCCGTCTTCaccacgt
ttgttcctcttagatgaaacttgCCTTAggctatagcatagtctacttCT
TACACAGCGACAATATATTGAAgactaaaaaattatttttatctagATAT
CTAGAGAActaaataaaagattttttattcatGAAGAGCTTTTaacctac
aatcatggtcgaaaaaTATTGAGCGTATTTTCACGTTTTTCAGATTGTAT
GcattgaaatatattgagaattccggttattttaacgttttaaaGTTCTG
gcaagaaagtcgattttgggctctTTAATCCAatcgaaaatttcaatttg
ggaggggttggcagacttccaggctatattttgagccttattagactatt
tttgaacttttggatcctcacatcTTAAGTCTAGccttaaaactcagagt
taaaaccattgagtttcaagcccgaagggctagaggtcaatctctttggt
aggatttgaagccaacaaatcctaccaaagttgtgcggccttgagcgacc
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgcgacccgcctggtttttacaca
aatgacagattgaaactaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaaaaata
tatcactcgaaaacaaaggaattgctagattcaatccgtcataaaaaata
cggcgcatattttaaggcttcaatttttcttgcctgagaaaggttagaga
ttgacctctagcccttcgggcttgaaactcaatggttaaaactctaccct
tcgagcctattttagagcacttacaaatcgattgtggtttcaaaaaatga
atttcccttttttctcaaatattatgaccttggtTGTAGGTGAATGTGAG
GTACCAGATGCAAACAAAATCAACTGTGGCCATGATACAATAAAAGACTC
TGAATGTTATGCGAGAGGATGTTGCTGGCATCCAAAATCAGGATATCATT
ATTGCTTTAATCCGAAAAGTAAGTCACCTTTATAAATGTTAATACAGATC
ATGAGTGAGTATTAAAGCTTCAATACCACGTCGAATAGATCATTACAGCA
AGTAGAAATGATTCGAAATTGTCTAGATGGCTAGATGGTCAGTATCTATC
actgataaaaatttcaagtcaaaagcttaATTAGTTCCCGAGTTCCTGAG
TTCTGGCAGGTGGTCAAAGTGTATTTTACAGATGagtttgcaaattttca
aatattcatgggaacgaattttttctgttacaagtttcttttatttgaca
aatcagcCTTCAGGATCAAGTTTCAGTTACATCGAAGGAGTCAATCACTC
AATACATGATTTGGGTCAAGTTTATAAAATATCAACCAGATAGATGACTG
GTATTTACCACTGATCAGAATTTCAAGGCTATAGCGcttgtcaatcttga
gattttaagggGGGCTCGAGACCCCAGTCCCCAAGATGCTTCCCTAAGTA
GcaaaataggaagatgctcgaagggtcAAATGAGCCATGCCCTTTAAAGC
TTCTAACTTTACTTACCAAGGGAATACAACTctaacaacaacaacgacaa
cgacGACGACAACAGCAGTACTAATACCAAAGACCACTACATCTACTACT
ACATCTACAACGACTTCAACAACGACCTCATCAAAGATAACATCAACACT
GAGATCAACAGCAATCGCTTCAACAGGCATGAAAACAACtcacattccaa
caacttcacAGAGAACTAAAATCTCAACAATAATATCCACCGATCGATCA
AAAACAACTCCAAGAAAAAATAATACATCCACAATATTTTCGATACCGAA
ACGCACTACATCAGCAacctcaaaaacaaaatttaccacAGTAGACAGCT
CCACAAATGCAAACCAAGGAAAAAGTACAGGTATCTTTAACtttgttttt
agatttccaCTTTGGTTAGGTTTCTCGATATCATCCGTTGATTCTTTGTT
TTGCGTTAGCTCAGCATCAACATTCTTAATTTTTATTATCAGTGGATCAt
atataccgtgaaaagcacaggtcaaaatcatatatcgacgctgtgccgac
caatccagcttctattcagcgcgcaatcaatgaagagaaaagtaaccatg
acaacCATCCAAGATCTGTGATGaaattcaaagttgatatttttattccc
gtcgttgaaaacacaactcaaaaatgtcatcaatgcttttttaaaagagt
cagtgatagagaatcgtaacataaagtttgtctattatttcgattcaatt
aaagtgacatttccataattaatagttgagtaattactgttatacatttg
gggatcatgtaaaagatttctttcgaaagaaactcatttcaaattacaat
tggaggtttctggggtattcgtaaatagtaaactgcatactgatacagtc
tgctagacaataatatggtaatatttgctcttcatctttgatttttctac
agtgattagattgacacatgcgcgataaaatttctattattggtcttcag
aggttgaaatattctcaacctctgatactcagggtagatCATATAGTGTG
TGGTTGTGTTCTTACCACCGAGCGTACAGTTTAAATTCCTTTGGGATACA
CTTTCTCGAGCGTATCCGCCAATTACCGCGTGGACATTTTTTGCCCACTT
TATCCCACTTTAACCATCCCAgcccttttttcgcacctatagacaataga
aaaaggtgtaaaaaaggattggattgagtttagggggataattaaatgaT
TAAATGACACACGCCTGACCACgcgactacggtcaaaaaggtgtgtTGAG
ACAATGATTTGAACTTTTTCATCACTCGTATGTTTTCTAGTGTCATCAGC
TCAAAGAGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025097-exon-sc0000521-1491911889:47271..47316 | TCONS_00025097-exon-sc0000521-1491911889:47271..47316 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:47271..47316 | TCONS_00025097-exon-sc0000521-1510915933:47271..47316 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:47271..47316 | TCONS_00025097-exon-sc0000521-1575043694:47271..47316 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1491911889:48687..48767 | TCONS_00025097-exon-sc0000521-1491911889:48687..48767 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:48687..48767 | TCONS_00025097-exon-sc0000521-1510915933:48687..48767 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:48687..48767 | TCONS_00025097-exon-sc0000521-1575043694:48687..48767 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1491911889:49612..49740 | TCONS_00025097-exon-sc0000521-1491911889:49612..49740 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:49612..49740 | TCONS_00025097-exon-sc0000521-1510915933:49612..49740 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:49612..49740 | TCONS_00025097-exon-sc0000521-1575043694:49612..49740 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1491911889:53260..53388 | TCONS_00025097-exon-sc0000521-1491911889:53260..53388 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:53260..53388 | TCONS_00025097-exon-sc0000521-1510915933:53260..53388 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:53260..53388 | TCONS_00025097-exon-sc0000521-1575043694:53260..53388 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1491911889:53941..54300 | TCONS_00025097-exon-sc0000521-1491911889:53941..54300 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:53941..54300 | TCONS_00025097-exon-sc0000521-1510915933:53941..54300 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:53941..54300 | TCONS_00025097-exon-sc0000521-1575043694:53941..54300 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1491911889:55261..55283 | TCONS_00025097-exon-sc0000521-1491911889:55261..55283 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1510915933:55261..55283 | TCONS_00025097-exon-sc0000521-1510915933:55261..55283 | Clytia hemisphaerica | exon |
| TCONS_00025097-exon-sc0000521-1575043694:55261..55283 | TCONS_00025097-exon-sc0000521-1575043694:55261..55283 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:47271..55283 + |
Blast
The following BLAST results are available for this feature:
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