TCONS_00025099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025099
Unique NameTCONS_00025099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025099 ID=TCONS_00025099|Name=TCONS_00025099|organism=Clytia hemisphaerica|type=transcript|length=346bp
GGAAGACCTTGCGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCAC
AATCGATTGTCGAGATAATAAAAATAATGTTACACAAAATATTCTCTTGA
TTAAAATAAATGGAGAACAATTTATGGATATCGTTGTACCAACTACAAAT
ATTCCAACCCTTTACCCAACAAAACTATCGACAAGCAAACCAGATCAGTG
TGACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTGGGATCGACG
AAACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATCCAAGGTCAT
AAGTATTGCTATCAACCAAAAGcaaaattcaagaaaaacgagtccc
Run BLAST on NCBI

transcript from alignment at sc0000521:48210..50145+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025099 ID=TCONS_00025099|Name=TCONS_00025099|organism=Clytia hemisphaerica|type=transcript|length=1936bp|location=Sequence derived from alignment at sc0000521:48210..50145+ (Clytia hemisphaerica)
GGAAGACCTTGCGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCAC
AATCGATTGTCGAGATAATAAAAATAATGTTACACAAAATATTCTCTTGA
TTAAAATAAATGGTAAGCCTATCAAAATACATTATAGAACGGATTGCAAT
GGTAATTCTAGACTTGATTTTAGATCACTTAGAACCATGAACCATTTCAC
AATCAGAACCCATAAACTCATCTTATTATGTGTTACCATTGATAAAAACT
CATTTTCCCGTAATTTCGAAGGTGAAAAATTTCAGATTAATTCATTGGGT
GAttgatttctattttaaatAAATGTGCAGGTTAAAATTTTTCATCACTT
TGAATGATGTTCATGAAAGCTTACAAGATAAAAATTCAGCTTCTATACGC
TGTAATGCAAAATATGGTGTAAGAATTCCTTTCCAAATGGCtcaataaaa
ctaaaatttacttgtCTTTACTTTAAGGAGAACAATTTATGGATATCGTT
GTACCAACTACAAATATTCCAACCCTTTACCCAACAAAACTATCGACAAG
CAAACCAGGTAAGTCTTCGGAAGATTATGATTGTTGTTCGTCGTTAAAAA
AATCGTTAGTGAAAGAATATTCGCCAGCAAAAAATATTCGTAGGTAAGTG
AAATCCGTCATTTGCCAAAAAGAATTCCTCAAGTAATGTCGGTTTTTTAG
AGGGATTACAGGCTGGAAAATACAAATGAAATTATTGCATTTTCTTCAGT
TTCTTCTCTCGTAAGTATAGCATAAAAGACTTATTTTTCATAGTTTTCTA
ATAACAACCGCCTCTCCGACCGGATTGTGTGGATGTCCTGCGGGGCTAAG
CATAGTCTGCGTTTTCACTGGTTAAGATAAGTTTTTAGAAACGTCATAAT
TTAATTATTTAATGTTTTAAAGATTTCATACAGGCTAGGGTGAAATACAG
ACTACGCTAAACTAGCATGCATGCCAGTTGAACACTAAAACGATTGTATg
tgggaaaagtgagcgtaggagttaggtaaccgtagaaagaaaatttgtca
aaaggAAGGGTTGAGAAATTCCCTTATCAGGACACTCTCTGCAGCCTTTC
CTCGTTCTTCTATAAGGCTTCTGATTTAGCAAACGCCCACCGCCAATATG
CTTCCGCCCTCTGACATGTTTAATTAATAACCTGGTTGACTAGTCTTCGA
GCTTACGAAATTCGCAGGATATCCGCAAACTCCGGTAGAGGTTTGCGGAT
GATTAGAAAGATATTTCATAAAGCTTGATTGAGGCAAGACAAGAGTTCGC
AGAAATCCCAAGAGCCTCTCATAATATAATCAAATAATATGTCAAAGTTT
TACTAGGTTTTTATAGAGagtaactttttaatttttaaaaaactgtttaa
aGATCAGTGTGACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTG
GGATCGACGAAACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATC
CAAGGTCATAAGTATTGCTATCAACCAAAAGGTAATTTGAACCGTTCTCA
CcataaataattttcaaatcttttgtttACCCTAATCTTTCCCCCTTTTA
CCAGGAGGTCTTCACCCATTATCACTATAACTCATTTCAAGAGCTTTATG
AGAACCTAAAACAATTTCTGACTGTTTTTACCACATTTTTTTACCCGTAA
TATCCGTCAGGAAGGAGTTTATGGCGAAAATCCTTCATAAAACCCAATTA
AAATCACGTAAAATCCGCTAAATCTAAAAGATTCACAAAATTACTTAGAA
TGCTCATCGAATCCCAAGTAGGGTCGCAATAACatcaactttaaaaaatc
aattccGTGTCGGATACCTTTTTAGGGGAATTGGggaaaaaagtggaaaa
ttttgaatttagcaaaattcaagaaaaacgagtccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014114XLOC_014114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025099-exon-sc0000521-1491911889:48210..48321TCONS_00025099-exon-sc0000521-1491911889:48210..48321Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1510915933:48210..48321TCONS_00025099-exon-sc0000521-1510915933:48210..48321Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1575043694:48210..48321TCONS_00025099-exon-sc0000521-1575043694:48210..48321Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1491911889:48687..48767TCONS_00025099-exon-sc0000521-1491911889:48687..48767Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1510915933:48687..48767TCONS_00025099-exon-sc0000521-1510915933:48687..48767Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1575043694:48687..48767TCONS_00025099-exon-sc0000521-1575043694:48687..48767Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1491911889:49612..49740TCONS_00025099-exon-sc0000521-1491911889:49612..49740Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1510915933:49612..49740TCONS_00025099-exon-sc0000521-1510915933:49612..49740Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1575043694:49612..49740TCONS_00025099-exon-sc0000521-1575043694:49612..49740Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1491911889:50122..50145TCONS_00025099-exon-sc0000521-1491911889:50122..50145Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1510915933:50122..50145TCONS_00025099-exon-sc0000521-1510915933:50122..50145Clytia hemisphaericaexon
TCONS_00025099-exon-sc0000521-1575043694:50122..50145TCONS_00025099-exon-sc0000521-1575043694:50122..50145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:48210..50145 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11609	0	3.03347	2.29347	1.97056	0.592622	0	0	0	0.0184937	0	0	0.519905	2.55844	0	3.64207	0	1.22267	2.19834	1.82465	1.05093	0	3.13149	3.37914	0	0	1.65956	1.637	4.66943	2.29096
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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