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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025261 ID=TCONS_00025261|Name=TCONS_00025261|organism=Clytia hemisphaerica|type=transcript|length=1732bp
NATACATCTTGCAATGAAAAACACGaggggaaaaaaagaaaaggtatgga
tgcaaaaaattctttgtttatATTCCTAATcggttggaaaattttgaaac
tgttaGAATGACTGTTCTTGATGATAATGCAATTGGGTTGAGGTTTTTAT
ATGATGTTTAcataattagttattcaaaacaataaagatgatgcgttctt
tagaaaacatGTAATAAAAGCTTTGTctgaatagttaacgaccaatccaa
tgacgAGAATTCTTGCAAAATGTTCTTCTCGACCCGATAAATGCTCTTCA
AAAGACTCCCTTGCAGTTGTGTAGGATATATATAATATGGTTGTCCGAAG
TGGTGTAACGATCAACAATAACTCAGATGTAATAGGCTCTTTTCGATTTT
ACTTAGCATCAGGGTTCCTAATTTTTGATTGCCTCTATCCTTTGCTCGAG
AAGGGATGCGTAATCTCCTCCgaataaaatgataaaacaaataATGTAAG
AAAACTCTCATACCTCTGGAAGTGGCATATGCAACAGAGCAGTGATACCA
TAATAATCGCCAATCGATATCTGCATTCACGCAAACGATATCTTTAAAAA
AGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCATTCATA
TCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGATATCT
GCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCAGCAAA
TATAGCATCGATACCATGATTCGGTTGTCCTCAATTTTTACAcCTCTAAA
ATTGGCATATGCAACAGAGCAGCGATACCATAATAATCGTCAATCGATAT
CTGCATTCACGCAAACGATATCTTTAAAAAGGTATTGCAACAGAGCACGA
TACCAAAAACTGATATGAGCAACGAGGCATTCATATCCACAAATATGCAA
CATATGTGCATCATAATCTCAAAACACTGATATCTGCAACAGAGCACGAT
AACCACAAATTGATAATAATGTCGGTACCAGCAAATATAGCATCGATACC
ATGATTCGGTTGTTCTCAATTTTTACAcCAGTAGATGAGTTTGTTGACTT
CGTATTTAAATTATTTGCAAATCGATCTATTAATCGACCCGAAATGTGAA
ATTATAGGAAAATCTTAATGTCGATGAACCAATTATCGGTATCTATAGAT
TTTGAACTGATGTCAGCCGATTTGTTCTCTTCCCTTGGGATCCATGtaag
aaagaaaataatgttaTTCGCGATGTTATTGATAACTCAACCGTCGAAAG
CAATTagaaagaatataaaaacaCAATGTTTCGTTTATGTTTATTATGTT
CAGTTAATCACTAATTTCTTCtgctttttgattttgatgataCGAATTTG
ATGAGCTGTGTTTGCTAGAACCCGTTGTTGTTGATGAACTTTTTGACAAT
TCAGGACTTGTGGCTGTTCCTTTTGCACAAAATGTCGAATAATGTCCAAC
TTTTTGCAATTGTAGCACGCAACATCATTAAAAACAAGATGACGAGTTTA
TCTTTCTCTGTTCAATCTCTAtgttttgttttattctttCGGCAGATTTT
CTGGCctctttcaaatgtttttctttcatttcccCATTCGAAAGCAACAG
ATTTTGTCAACAGATTTTGTCCACAAAGTTTCACCACCGTCCATCCTTCC
CTGTCAGCAAGCCTTAGCATTTGAATCCTATN Run BLAST on NCBI transcript from alignment at sc0000529:27422..29914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025261 ID=TCONS_00025261|Name=TCONS_00025261|organism=Clytia hemisphaerica|type=transcript|length=2493bp|location=Sequence derived from alignment at sc0000529:27422..29914- (Clytia hemisphaerica)
NATACATCTTGCAATGAAAAACACGAGGGGAAAAAAAGAAAAGGTATGGA
TGCAAAAAATTCTTTGTTTATATTCCTAATCGGTTGGAAAATTTTGAAAC
TGTTAGAATGACTGTTCTTGATGATAATGCAATTGGGTTGAGGTTTTTAT
ATGATGTTTACATAATTAGTTATTCAAAACAATAAAGATGATGCGTTCTT
TAGAAAACATGTAATAAAAGCTTTGTCTGAATAGTTAACGACCAATCCAA
TGACGAGAATTCTTGCAAAATGTTCTTCTCGACCCGATAAATGCTCTTCA
AAAGACTCCCTTGCAGTTGTGTAGGATATATATAATATGGTTGTCCGAAG
TGGTGTAACGATCAACAATAACTCAGATGTAATAGGCTCTTTTCGATTTT
ACTTAGCATCAGGGTTCCTAATTTTTGATTGCCTCTATCCTTTGCTCGAG
AAGGGATGCGTAATCTCCTCCGAATAAAATGATAAAACAAATAATGTAAG
AAAACTCTCATACCTCTGGAAGTGGCATATGCAACAGAGCAGTGATACCA
TAATAATCGCCAATCGATATCTGCATTCACGCAAACGATATCTTTAAAAA
AGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCATTCATA
TCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGATATCT
GCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCAGCAAA
TATAGCATCGATACCATGATTCGGTTGTCCTCAATTTTTACACATGAAAA
TGAGAAAACAAATTACAAGATTGCATCATGAAAAACTTGGATCAAAAAAA
AATCAAACATGTTCTTGCCTTCGTGCCAATTACACAACAAAAAAATAAGC
ATTTCCAATAGTTGTTCAGTAGAGTAGAAAATTATAAACGGGCAGTATGC
ATTGAAAAAATGTTTTATTCGTCTTCGGGTGTGATGTAGCGCTAACGAGT
AAGAATTAGCGAAAACCATAAAAAATTACAACTAATGTTAGAACTGTTAA
TAAAATAAGAACACAAGAAAATGATTGACAATGGCTTGAATTCCTTTCCA
TTGGAACTTATCATAGTTTCTGATCTTTTATTGCTTCTATCCTTTGCTCG
AAGGGGATGCGTAACTTCCGCCGGATAATACGACAAAATGTAAAAATATA
AGAAAACTTTCATACCTCTAAAATTGGCATATGCAACAGAGCAGCGATAC
CATAATAATCGTCAATCGATATCTGCATTCACGCAAACGATATCTTTAAA
AAGGTATTGCAACAGAGCACGATACCAAAAACTGATATGAGCAACGAGGC
ATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACT
GATATCTGCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTAC
CAGCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTACAC
ATGAAAATGAGAAAACAAATTACAAGATTACATCATAAAAAACCTGGATC
GAAAAAAGAACAAACTATGTTCTCGCCTCTAGTGTCAAGTACACAACAAA
AAAATAAGCATTTCCAATAGTTGTTCAGTAGAGTAAAAAAAATATAAACA
GGGACAGAAAGCATTGAAAAAAATGTCTAAATATCAACCAAAAATAAGCA
GATTGCCATAACGGTATAAAAAGAATACTTTTCTCTTGACAGTTTTTCAG
ATGTTTGATGGTTTTCCCGACTAAAGAAATTGGAGGACATAACCAATTAA
GTTTATCTTTTCCCTAATGGCAAGCGAATGTATTCATACCAGTAGATGAG
TTTGTTGACTTCGTATTTAAATTATTTGCAAATCGATCTATTAATCGACC
CGAAATGTGAAATTATAGGAAAATCTTAATGTCGATGAACCAATTATCGG
TATCTATAGATTTTGAACTGATGTCAGCCGATTTGTTCTCTTCCCTTGGG
ATCCATGTAAGAAAGAAAATAATGTTATTCGCGATGTTATTGATAACTCA
ACCGTCGAAAGCAATTAGAAAGAATATAAAAACACAATGTTTCGTTTATG
TTTATTATGTTCAGTTAATCACTAATTTCTTCTGCTTTTTGATTTTGATG
ATACGAATTTGATGAGCTGTGTTTGCTAGAACCCGTTGTTGTTGATGAAC
TTTTTGACAATTCAGGACTTGTGGCTGTTCCTTTTGCACAAAATGTCGAA
TAATGTCCAACTTTTTGCAATTGTAGCACGCAACATCATTAAAAACAAGA
TGACGAGTTTATCTTTCTCTGTTCAATCTCTATGTTTTGTTTTATTCTTT
CGGCAGATTTTCTGGCCTCTTTCAAATGTTTTTCTTTCATTTCCCCATTC
GAAAGCAACAGATTTTGTCAACAGATTTTGTCCACAAAGTTTCACCACCG
TCCATCCTTCCCTGTCAGCAAGCCTTAGCATTTGAATCCTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025261-exon-sc0000529-1575043694:29122..29914 | TCONS_00025261-exon-sc0000529-1575043694:29122..29914 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1575043694:28415..28699 | TCONS_00025261-exon-sc0000529-1575043694:28415..28699 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1575043694:27422..28075 | TCONS_00025261-exon-sc0000529-1575043694:27422..28075 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1510915933:29122..29914 | TCONS_00025261-exon-sc0000529-1510915933:29122..29914 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1510915933:28415..28699 | TCONS_00025261-exon-sc0000529-1510915933:28415..28699 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1510915933:27422..28075 | TCONS_00025261-exon-sc0000529-1510915933:27422..28075 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1491911889:29122..29914 | TCONS_00025261-exon-sc0000529-1491911889:29122..29914 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1491911889:28415..28699 | TCONS_00025261-exon-sc0000529-1491911889:28415..28699 | Clytia hemisphaerica | exon |
| TCONS_00025261-exon-sc0000529-1491911889:27422..28075 | TCONS_00025261-exon-sc0000529-1491911889:27422..28075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:27422..29914 - |
Blast
The following BLAST results are available for this feature:
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