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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025286 ID=TCONS_00025286|Name=TCONS_00025286|organism=Clytia hemisphaerica|type=transcript|length=1516bp
ataatcgaatcctgacccccggaaaattaccacggactagaaagaacgaa
aaaaattgaaggggcggaattgctgattgaaactagttttcaccAAAGTC
AAACAAGCAAGGAGGAAGAAGGAGGCATGCATGCACCTTGCAAACCTTGC
TTGCCTTGGTTACAAACAGAATTGGTGCATGGAGTGAAGTTTGTGATGAA
AGGAGATAAATTGGATGAAAGAGACAATGTGCTTATTATATTGAATCACA
GATGTCGTGTTGACTGGATGTTTTATTGGATGGCAGTTCTGCGCACTGGA
CGTTTGCACAACGAGAAAATTATCATGAAGAATGAGTTGAAACATATCCC
TGGACCAGGCTGGTGTATGCAGTATTTGCTGTACTGCTTCTTACAGCGTA
AATGGGAGACCGACCGTGGCTACCTAGAGAGATACGTCAATTACTTCATT
GATGCCAAATACCCCTTACAATTCTTTCTTTTCCCTGAGGGAACTGATTT
CGACAAAAATGGAAAAGCAAGCAGTGATCGATTCGCTGATAAAATGGGTC
TCCCCAAATATGATTACGTCATGCACCCTCGTACCACTGGATTCAATTAT
TTGGTACAAAAAACACGTGGCAAAGTCATCAATACTGTTTATGACGTAAC
TTTAGGATATCCAGTCAATCTTTGTTATGGTGAGATGGACTTAGCAAGAG
GTAACTTTCCAAAAGAGATCCATTGTTTTTTCAAGAGGTATCAAGTAGAC
GAGCTGCCAACCGAGGATGGTGCATTAGGTGATTGGTGTAAGGAGAGGTT
TGCTGAAAAGGAGGAACGGTTGAAGGAGTTTTATAAACAAAAGAGGTTCA
CAGGTCCTGGTACAGAACAGGATGTCACCACAAGGAAACAAGAAGATCAT
GCTAATATCACCAATTATATCAGTTTGATATTCTGGGTGTCGTTTGTGTT
GTATTCCATCCAAGCAGTTTGGTGTTCATCTTTCTTGTTCTGGTACACCA
TCATCGTTTCCATCATCCATGCTGTTATTTCTGCTGTAGGAGGTATGGAT
AAAACTTTCTTAGATTTGCACGAGAAAGAAAAATCCAAACAAAGATGATA
GGCTTTTAGAGCTTTAATTTTGTTAATGtgtacttttttttaatttcatg
cATTTGTTGTAAAGGTAAGcgtcattttttatttcgttaatttaaaattt
tttcattttatatagtcacacaaagaagattttttttttaatttgattat
aTACGGacgatttaaagatttttgtggaACATTTTTTGATTCGATTTGGA
AGTAAGATTATATATTATCACATTATTTATTTGATATATGCATAAAGGAA
ATCAAAATGTTGAGTCCTACAATCTGTATATAGATAGGAAAAGTTTTTGT
CTACATTAGTctagttttcattttttaattttttgttgattttatcaCAT
TTTCATTTGCTTATGAGGGgtctttaagttttttttattgtttcatttat
aaaatgaTACAGATCG Run BLAST on NCBI protein sequence of TCONS_00025286-protein >TCONS_00025286-protein ID=TCONS_00025286-protein|Name=TCONS_00025286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MHAPCKPCLPWLQTELVHGVKFVMKGDKLDERDNVLIILNHRCRVDWMFY
WMAVLRTGRLHNEKIIMKNELKHIPGPGWCMQYLLYCFLQRKWETDRGYL
ERYVNYFIDAKYPLQFFLFPEGTDFDKNGKASSDRFADKMGLPKYDYVMH
PRTTGFNYLVQKTRGKVINTVYDVTLGYPVNLCYGEMDLARGNFPKEIHC
FFKRYQVDELPTEDGALGDWCKERFAEKEERLKEFYKQKRFTGPGTEQDV
TTRKQEDHANITNYISLIFWVSFVLYSIQAVWCSSFLFWYTIIVSIIHAV
ISAVGGMDKTFLDLHEKEKSKQR Run BLAST on NCBI transcript from alignment at sc0000529:218405..229008- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025286 ID=TCONS_00025286|Name=TCONS_00025286|organism=Clytia hemisphaerica|type=transcript|length=10604bp|location=Sequence derived from alignment at sc0000529:218405..229008- (Clytia hemisphaerica)
ATAATCGAATCCTGACCCCCGGAAAATTACCACGGACTAGAAAGAACGAA
AAAAATTGAAGGGGCGGAATTGCTGATTGAAACTAGTTTTCACCAAAGTC
AAACAAGCAAGGAGGAAGAAGGAGGCATGCATGCACCTTGCAAACCTTGC
TTGCCTTGGTTACAAACAGGTATCATTTTAACTTTTGGTTGTGTATTACG
AAATCAGTCCCTAGCAAATTCTTGTGCTTGTACAGCTAACTCTTATTTTT
TTTTTTTTTCAATCTTGCATTAATTTGCCAAACAGTACCGTGGAAGTTAC
CTGACTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAATGACGGACCA
ATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTCCGCTCACA
GCACCACTCTACCATGTTTGTTTTGATTTAACTTCTGAACTTTGTATTTT
ATTTTAATGACCAGCCAGGTCATTTTCATTTGACCAATGTTAGCCTCCAC
TGATGCAAGTTACCCGATCTCAAGGTACTAATTGAATGTTCCGAACATTC
AATTTTTTATCAATAATACTCAACAAATATAATCAAACATCATCGAATGA
TGATATGATTTATTGATTAGGGTATATATACAGTACGCCAAAATTCTGAG
GTAGAGCATGAATCTGGTAATGTGGCCCACTTTGATTTATCAATTTTCCC
ACTTTGAGGCTTTGGTGAAATCTCTATAGGTATATAGTCATATCAAATCT
TATTGTTTCTGGTCAATCTTGATATGGGCAAGCTTAAACAGTCATTTTTT
CTGATATAACAGGTACTCAAATTTTCCTAGAGGGGACTTTCTTTCAAAAT
GTGAACAAAAATTATCAACATCATTGTATAATAATTCATCAACAACATGC
TTTTTCCAGTTTGGTTTTTGTTGTTCTCACAGGCAGAGGATATACTCAGC
TGAATCATTTAACGGTTACATTTGGGGTCATTTTATACAAATTTGGAGTC
TCAATGGCTATTTGTTGGGAGACGGTGAAACAAAACGGTTTCTCCAAAAA
TCAGTTATGTCTGCAACAAAAAGTTATGTCTGCAACAGATCATAAAGTTT
TCTCAACCTCCAAACACCAATTTTAGGTTTCTTTGACATTTTGGACCTTA
ACTTGGCATCAGAGTATTTGTTTTCTATTTCTAATAGCCTAAGCATTACT
TCCATATAATAAAACATCATGCCAGCTTACAAATACACTTTATCAGCAAC
ACTTTAGACAAAATAGTTATGTCCGCAACATGAAATACATATGAAAGAGG
TATAAATAAACTGGAAATCTTGCCAATGGAAAATTATGAAACTTTTTTCT
GGTTGTAACCAACTTAAAATGACCTTAGATGCAAATTTGTCTGATTATAA
CTGCTCTAGGTCAAATTTCTGGACCAAGCCAGTTTGATTAAGTCCTGATA
TTTATGTTTTCTGAAAATTGAAGTCATAAATAAATAGATTATCCAGGAAT
AAAAGTGAAATTCAAAACTTTATTTTTTCCAAATTTTTTCACCTATTTGG
GTGACATTATTACCAGATTCATGGTCGGTATAGCTATAATTGAATACTTT
ACATTTTATTAGCCTAAATCGCCATCGGAACTCTCCCATTCTCGCATGAA
GCTTTTTTGCTAGGGAGTCTTATGCAGACAGCAATTCTTTTCAATAATTT
CAATTCAATTCAATAATTGGTCAATTTTCAGCCTCAAAATAAAAGCTGCC
AAAACATGTACTGTGAGCATGAAATCAGGTACAGTAGATATACCAGACTG
GAAATGGTGCACAGTACGCCAAATATATTCCGAATGAGGCAGTAATTACT
CTTGGCGTATTGGCGTAAGGAGGGAACAACTGGAGCAGATATAAAGTAAG
ANACCAAATATATTTGGAATGAGGCAGTGATTACTCTTGGCGTATTGGCG
TAAGGAGGGAACAACTGGAGCAGATATAATAATAAGATATTGGCGTAAAT
CAAAGCTTCTGAAGACGAGAGAAGCCCTGCCATTTTAACTCCCGATTTCA
TGACGCCAGACAGGTTTAAGCGCACCCACCTTGCTTGTCGCCTCTCCCTC
AATCAGGCTAGCTCTAAAGCTCTAAAACAGCATCTAATAACATGAAAACC
AGAATATGATTCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAAAC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGGCACTGTCATTATTGACAATAAAACAAAGGATTTTCTGTCAAGA
GTCTTGTAAACATTCCAACAACTTCCATCGAAATGATCTGTCACTGCAAG
TCTACCATTTTTAACCTGGTCCAAGGAATGAGCCGAGAACGCTCGCAGAA
TGCTCGCGGCGCGGATGAAAAACTTTAATATGTCAATCATCTTCTCAAGC
GAAGAGACGCGAAGCGATTCTAGCTTTACGGTAGTGCCGCAGATCATCAG
TGGATAATATTCAATTATCATTATCCCTTTATTTTCATTCCTAGAACTTT
TGCAAAAAAAAGGAAAAATAGAAAAGTTGTATTTTTTACTGCTTTATTCA
CATACTGAATTTGAAAATTCTCCTATGTGGCGTTTTTTTGCAAACTTAAA
AAAACTGATTTTTGTCCAAATATGCGTTTCCCGTAATTTTTGTATGAAGA
GTTGGGTCTATATACCGGGTGACCCACGAAAAAGTTCGGACGTTTCTCGG
CGTCTTGAGGCCGAACAAATGTCCCAAAGTGCTTGGAGTTTTATTATTTA
GAAAGTAGATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCGCA
ATTTAGCTGTTACGCATACAAGTGGACCTTTAATTGGTGTAGACCTCAGT
TTTAACAAATAACAATTCGGCGTGCACTTTGCATCATTTCCACACTGGTA
GGTATAGTAACTAAACTTGCATCACTGGAGGGAAACACATGCATGGACAC
TCCAATTTACAGGCCAACTAAATCAGCAGAAATCAGTATTACTTCTGATG
TTGTAAGTGTTGAAATGCAAACATGGTGACAAAATTACTTAACAATAGAA
AAACATACGACCTAATTTAGAATCACTTTTTTTCTCACACTTCATGTTTA
AAAAAGTTTCGAAGAGCTTGATTGTATATAACCAGACAGTGTCAATTGAA
CAACTTCGAACAAAAATCTTAATAGAACCAATCTAACGTAATTGAACGCG
ATCGAATAATTGCAATTCAATTGTCGAACGTAATCGAATCTCAAGGAAAC
GACGTATTCCTGGGTAATATTCAATTCTGTTCGAGTAAGGTTAGATTGGT
TCAATTGATAGTTGACTATGTTCGATTGGTTCAATTGATTTTCAATTACA
TTCAGTAAATCTTCGGTTTCGTTTGATTACGATTATGTTCAATGAGTTTG
ATTGCGATTAAATTAAATTAGTGATCTAATTTAATTTAGGGCTTTTTAGC
GTGGGTGGTTGAGCGCTTTTAAGTACAGTACGAAAGCGAATCAAATCTAA
TACAATTGAATATAGTCTAACGTAATCTAACATAATCAAACACAATCGAA
CGTAATTAAAGCAATCCAACAGCAAATCCTGCGTAATATTTGATTGCGTT
CGACAATCGAATTGCAATTATTCAATTGTGTCAATCGATTCTAGGTTCGA
TTCATTCGATTGACACCGTCTGGATACGACTTTTGCCTGCTCTCCTCTCC
ACACTTACTCTCCCTCGTTTTCACAACATTTTTATAAAAATGTTAAAACT
GGGGTGGTTTCTACAAGGATGCATACTAAAAGAATAGATCTTTGCGCCTT
TCCATCCTCCATATCAAGTTGTATGCAAAAGTTATGGTGGCTGAATGGCC
ATTGGTTTTCTTTTTTCCGCCCCTTTCTCTCCAGGGCAGCTGAGAGGCTG
GTAAATATTTTACCAAGTAGATGGGAAAATCAGACTCATATCTATCAACC
AATCATATTTTCAGTGAGGCTGGATTACAATTTTACCAGCTTTTTAGCGA
TTTTTGCCTCGCTAACCTAATCCGGGAAAATAATGTACATATGTACACTT
TGGATTAATTTATAGAAATAACCCAAATCTCACAACCTTTTTACCTTAAA
GGAAGATTGAAATTAGAGTTTTGCAGCAAAGAACTCTCATGGGAATTCCG
ATATCTAACCCGATTGGTTTTAATCTCAGAACGGCTTCAAGAAAGTCATA
ATGGCAGATAATTTAACAGTTTCTTATGAGGAAATATGTGGAATTTGTTG
ATGTTGATTGCTTGTTGATTCGGTAAAGAGAAAAAACAGAAGTTCCAGTT
TCACTGATTTTAGTCTAATGATGTATATAATTTAAATGATCGAGATTCCA
TCTTTTGAAAACTCTAAAGTTTGTTGCATCAAGAGAATAGAGAGTTTTCG
CAGTCACAACGGCAACCGCAAGCAACGTGAAAACGTGTGAAATTGCATAT
AGGTGAGAAAAAATATCAGCGTTGCTGTTGTGGCTTATTTTTGTTTCCAC
AATTATTTTAACAACGGCAACGTCTATCATTTTTACAAAGGAAAGAAAAA
TGGTAAATTTTGGAGAAAATCTCGAAGCTATTCTCTTCCAATGCAAACTA
AAAATACTGTAATACTATTTTTATTAATTTTGAAATTTTGAAAGCATTTT
CTTAAATTTATATCGGGGATCAATTTTCACAGTTTTGAGAACACAAAAGT
GAAAAGGTACCCTTGAGGTTTGATTTCCCTAAAAGTTTTCCCTGATAGCC
TGATCATTGTGAGGCTCTTGAGTATATTACAGTAATTTTTATAAAATCCT
GCTTCTAACGGTACCTAGCAAGACTGCACAGAATTTTTTCTACGTCAGAC
TCTAATTCTGCCAGACTAAGGGGTCACTCAGGAATCGGTTTTAGGTTAAC
GTCAATTGGCATTAGTTAATTTTAGAAATTGATTGAATTAACTAAATTAA
TCATGGTTGGCTTCTTGTTGTCAATCTTACATCCGACTTTCGAACAAGCT
GACCACAGAACATTTCTACAAACCGGGCACATTTTGAGACCTTTAGCCAT
TTTGATTGAAACAAACACAACCTTCTCGGCAACAAACGAATACTTCCTTC
ATCTCTTCCTCTTTTTCTTTCTCTTCCTCAACAAGAGCCTTGACTTTGGA
CACTGTATCTTTACCTGCATCAATCCACAAACTTGCGTAATTCGTTCTGC
TTTTGTCTTTTTGGGAACAATTTTCTTCAACAGTAGAAGACCATCAATTT
TTTTTGGTTTTAGCATACTTTTTCTAAATTTATTCATTATGCGGATTATG
AGCAAGTATATGTCGATTCGCAATCCTATCAGACACTTTCATACCTAAAA
TCATGAATATTGGTTGATTTTTTAGAAAGTTTATATGAATGAAAAAGTGA
ACCTACATTTATTTTGGGGTGCAGTGACGTAAAAAAAAACGAAATTTCAA
ACTTGTATATTTTTCATCTAAAAGACTTTGAGAATGAACAATGCACCAGG
AGAGTTTCTTATGGAGATAAAGAAGTTATAACAAGTTCTTCTTTTTTCGC
GTCAGAAGTAAAACAAAAATTACTGACATTTTGGGGTGCAGACAGTGTAG
TGTTATATTTGAAAAATAACAGATAATTTCTAGACAAATATTTTGATTTA
AAAAGTATTGATGACAAATCTTTTAAATTCATTTTTCTAAATCAGTAGAG
GGTGTTCAAATGTTTGAATCGCGATCAAACCAATTAAACATACTAGAATA
ATTGCAATTCGGTTGTCAAGCGTAATTGAATCGCAATGTCAATGTCGGTC
CATTTCTGAGTTATATTCAATTGGCTTCAATTGATTCAACCTTCGTTTTG
TCCATCTGGTAATCATAATGAAGTGTGTGTAATGTAACTAAGAGTTTTTA
GGGGATAAATTTCTATTTTTAATTTTTTAAGTCTAATGTTAGCATTTATT
GTCATTAGGGTAACAATTTAAAAAAACAACATGAGTGCCGTTATTGGCTA
CGTACGTGGAATCATCAATATTTTTTTCATGTTTTTCTCTGCTTTCTTTG
GCTTGGTTTTTATCATGTTTCCAAGCTTGATATTGTTGGCTTTTAAGAAG
TATGACTGGTTTCGAATGTGGAATGATTACTGGGGAGGCTTTTGGCTAAC
CTTCCCTGGTGTGAGTATATTGACTTATTTTTTCTATGTACTGAATTGTA
TGTCTTTATAAGGGATTTACATAAGACATTGTGACAAAAAAAGATTTACT
TCTCTATATATAATTGACATTACATCATTATGATTACCTGTGGAATTTCT
TGACCCCTTTAAAATACTCTTTGTGACATGAAGCTTCGTTTGAATATCAA
TCTTGCTAGTGTTTTACGGTGATTTTTATTGTTTTCTTTATGATTAAATA
AAGTTGAATGATATTTAATTTTTAGTGAAATCTGGTAAAAGTATCTAAAC
AAGAATTTTTTTCTTTTTAGGCACTCTTTGGTAAGTATCATCGACTGAGT
GAAAGATTCCATCATTTGTTATGTTTTCCTCTGTTTAAGATATGTTTTTT
TCCAGTTTTTTAAGGCTACTTAAATTAAATTAAAGCTAAACGTTGTGGTA
TTTATAAGCACATTGGTATTTATAAATTTGACCAAATCAAACGCTATTCG
ATTAGACCAAATTCTTAGTGTTGGTATCTGATGGCCTTTGGCCTGGTAAT
TTTAGAATTGGTGCATGGAGTGAAGTTTGTGATGAAAGGAGATAAATTGG
ATGAAAGAGACAATGTGCTTATTATATTGAATCACAGATGTCGTGTTGAC
TGGATGTTTTATTGGATGGCAGTTCTGCGCACTGGACGTTTGCACAACGA
GAAAATTATCATGAAGAATGAGTTGAAACATATCCCTGGACCAGGTTTCA
CTTTTACTTAATGTGTTTAAATTTTGCAAGAGTAGTAAACATTATAAACA
TATAGCAGTGATTTGTAGATTTTTTTGTATTCCGTTTTCTTTTCTATTTT
TATTTCTATTTAATTTTCGCTAAAATCACTAATAGATCTTTTTAAAGAGT
TGAGCAACAGGGGGGGGGCACATGATGTGTAGTAAGTGCCTTTTCAGCAC
TTTTTTTAGGACCACCACCCATTGCAATTACTACACCAGGGTAGTAACTT
TATTTCTGGGAAAAAAATTCAGGTACCACCCCCATTTTGGGTGCAAATAT
CAAGTACACCACTTCTATGCAACTTTGTGACATTTTGAAGAAACATTTGT
ATATATGCTGTGGAAAGTAACCCATACATGAGGAAAACTCCCAAGTTGAC
TGTAGTTATTTTTAAAAGTTTTAAGAGGCCTTGTTGAAATATTTAGCAAA
AGTGATTTTTAAATAATACTTTTCATCTCTTCATCAAAATATGAATTAAT
CTGAATTAATCATAAACTAAAGTCTGTCTCAAAATAATTTGCAGCTGATA
CAAAAATGGCTGTAACTTTTGACAGAATTCGAATTAGATAGCGGTTTTGT
GCTTGTGCTTGTTGAAAAGATAATCCAGAGTGGAATATCATCAAAAAAGA
AAAAAATATTTAAAAATGGAAAAACGAAGAAAATCAACTTTTTGTAGAAT
AATGGTATCTTTTTTTTTTCATATCAGAATTTCTTCAATCTTAGAACGTC
AAAAATGCGAGAAAAAAATCAAAAAATATTCATTCAGTCAAAAAATACAG
CTTAAAACTTTGCCCTGATTGACTTAAAAAAGGCTTTTTGAAGTCAATCA
GTGATAAACTTTGAACTATATCTTTCGATGCAATAAATTTCTTTGTTGAA
GAAGTTGATTTTCTTCTTCATTTTGAATCTTCATTTTTCGATCCTATTTG
TCTTTTCAACAAGCACAAAACCGCTAACTAATTCGAATTTTATCAAAAGT
TATAGCATTTTTTTGTCTCCTCTACAAATTATTTTGAGACAGACTTTACA
CAATGAAACCTAATAAAACATCTATTTAAACTTCTTAAAAAAACAAAGAA
ATTTTGTAACAAGCTTGCACCCATTAGTTCTTAATTGCCCATTGAAATGT
GCCAAGAGTCTTGATATTTTCCATAATAGAAGGTTATCAGTTGTGGAATT
AAAATTGAAATCAATCAAAATTCCCCAAATGAACCACAAGGGATTATGTG
GCAGAAAACATATACATGCTTGCTAGCAGTCCTATTGGCATTAGTCCTTG
TGATTTTCAGACTTCCAAAACTTCAAATGACTGAAAATGGGTGAACCTTA
AGCCACCCAGGTGGTGGGTGCACCAGAGAGCTCTGACAAGTGGTTTATAA
TTGATTAAACCATCTCAAATATGATTTAATTAAATGTCTTCTCGAAAAAG
TTTAAGAGCAAAACTCAATCTTTAATGTCGAGTGGATTTGGCTTCTGTTT
TATCACCCAAACTCTCCGAATCCAATAAAAACAACATTTGCCCTGGTAAA
TTGGGGAAAGACACCACCCTAAACAGCAATTACTACACTGTGTAGTAACT
GCTTTCAAAATTTTTGAAAACAGTACAACCACGGTAGTAAGTGTCATACT
GTCTTAAAATAACTGCGTGCCCCCCTGGCGACAAATTAGTTTTCGATTTT
GACATGCAGAATGATTTGTTTGTGGTCTTTTCGAAGGCTGGAGAAATTGT
TCAGCTATGGAGCTCCTTTGAAAACTTTTCAATTTATCAAATTTCTCTTG
AATCGTGTAAACCCATGATCTAAAACTTTCTCTTTATGTTTTTCAGGCTG
GTGTATGCAGTATTTGCTGTACTGCTTCTTACAGCGTAAATGGGAGACCG
ACCGTGGCTACCTAGAGAGATACGTCAATTACTTCATTGATGCCAAATAC
CCCTTACAATTCTTTCTTTTCCCTGAGGGAACTGATTTCGACAAAAATGG
AAAAGCAAGCAGTGATCGATTCGCTGATAAAATGGGTCTCCCCAAATATG
ATTACGTCATGCACCCTCGTACCACTGGATTCAATTATTTGGTACAAAAA
ACACGTGGCAAAGTCATCAATACTGTTTATGACGTAACTTTAGGATATCC
AGTCAATCTTTGTTATGGTGAGATGGACTTAGCAAGAGGTAACTTTCCAA
AAGAGATCCATTGTTTTTTCAAGAGGTATCAAGTAGACGAGCTGCCAACC
GAGGATGGTGCATTAGGTGATTGGTGTAAGGAGAGGTTTGCTGAAAAGGA
GGAACGGTTGAAGGAGTTTTATAAACAAAAGAGGTTCACAGGTCCTGGTA
CAGAACAGGATGTCACCACAAGGAAACAAGAAGATCATGCTAATATCACC
AATTATATCAGTTTGATATTCTGGGTGTCGTTTGTGTTGTATTCCATCCA
AGCAGTTTGGTGTTCATCTTTCTTGTTCTGGTACACCATCATCGTTTCCA
TCATCCATGCTGTTATTTCTGCTGTAGGAGGTATGGATAAAACTTTCTTA
GATTTGCACGAGAAAGAAAAATCCAAACAAAGATGATAGGCTTTTAGAGC
TTTAATTTTGTTAATGTGTACTTTTTTTTAATTTCATGCATTTGTTGTAA
AGGTAAGCGTCATTTTTTATTTCGTTAATTTAAAATTTTTTCATTTTATA
TAGTCACACAAAGAAGATTTTTTTTTTAATTTGATTATATACGGACGATT
TAAAGATTTTTGTGGAACATTTTTTGATTCGATTTGGAAGTAAGATTATA
TATTATCACATTATTTATTTGATATATGCATAAAGGAAATCAAAATGTTG
AGTCCTACAATCTGTATATAGATAGGAAAAGTTTTTGTCTACATTAGTCT
AGTTTTCATTTTTTAATTTTTTGTTGATTTTATCACATTTTCATTTGCTT
ATGAGGGGTCTTTAAGTTTTTTTTATTGTTTCATTTATAAAATGATACAG
ATCG Coding sequence (CDS) from alignment at sc0000529:218405..229008- >TCONS_00025286 ID=TCONS_00025286|Name=TCONS_00025286|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at sc0000529:218405..229008- (Clytia hemisphaerica)
GCTGGTGTATGCAGTATTTGCTGTACTGCTTCTTACAGCGTAAATGGGAG
ACCGACCGTGGCTACCTAGAGAGATACGTCAATTACTTCATTGATGCCAA
ATACCCCTTACAATTCTTTCTTTTCCCTGAGGGAACTGATTTCGACAAAA
ATGGAAAAGCAAGCAGTGATCGATTCGCTGATAAAATGGGTCTCCCCAAA
TATGATTACGTCATGCACCCTCGTACCACTGGATTCAATTATTTGGTACA
AAAAACACGTGGCAAAGTCATCAATACTGTTTATGACGTAACTTTAGGAT
ATCCAGTCAATCTTTGTTATGGTGAGATGGACTTAGCAAGAGGTAACTTT
CCAAAAGAGATCCATTGTTTTTTCAAGAGGTATCAAGTAGACGAGCTGCC
AACCGAGGATGGTGCATTAGGTGATTGGTGTAAGGAGAGGTTTGCTGAAA
AGGAGGAACGGTTGAAGGAGTTTTATAAACAAAAGAGGTTCACAGGTCCT
GGTACAGAACAGGATGTCACCACAAGGAAACAAGAAGATCATGCTAATAT
CACCAATTATATCAGTTTGATATTCTGGGTGTCGTTTGTGTTGTATTCCA
TCCAAGCAGTTTGGTGTTCATCTTTCTTGTTCTGGTACACCATCATCGTT
TCCATCATCCATGCTGTTATTTCTGCTGTAGGAGGTATGGATAAAACTTT
CTTAGATTTGCACGAGAAAGAAAAATCCAAACAAAGATGAAATTGGTGCA
TGGAGTGAAGTTTGTGATGAAAGGAGATAAATTGGATGAAAGAGACAATG
TGCTTATTATATTGAATCACAGATGTCGTGTTGACTGGATGTTTTATTGG
ATGGCAGTTCTGCGCACTGGACGTTTGCACAACGAGAAAATTATCATGAA
GAATGAGTTGAAACATATCCCTGGACCAGATGCATGCACCTTGCAAACCT
TGCTTGCCTTGGTTACAAACAGGCTGGTGTATGCAGTATTTGCTGTACTG
CTTCTTACAGCGTAAATGGGAGACCGACCGTGGCTACCTAGAGAGATACG
TCAATTACTTCATTGATGCCAAATACCCCTTACAATTCTTTCTTTTCCCT
GAGGGAACTGATTTCGACAAAAATGGAAAAGCAAGCAGTGATCGATTCGC
TGATAAAATGGGTCTCCCCAAATATGATTACGTCATGCACCCTCGTACCA
CTGGATTCAATTATTTGGTACAAAAAACACGTGGCAAAGTCATCAATACT
GTTTATGACGTAACTTTAGGATATCCAGTCAATCTTTGTTATGGTGAGAT
GGACTTAGCAAGAGGTAACTTTCCAAAAGAGATCCATTGTTTTTTCAAGA
GGTATCAAGTAGACGAGCTGCCAACCGAGGATGGTGCATTAGGTGATTGG
TGTAAGGAGAGGTTTGCTGAAAAGGAGGAACGGTTGAAGGAGTTTTATAA
ACAAAAGAGGTTCACAGGTCCTGGTACAGAACAGGATGTCACCACAAGGA
AACAAGAAGATCATGCTAATATCACCAATTATATCAGTTTGATATTCTGG
GTGTCGTTTGTGTTGTATTCCATCCAAGCAGTTTGGTGTTCATCTTTCTT
GTTCTGGTACACCATCATCGTTTCCATCATCCATGCTGTTATTTCTGCTG
TAGGAGGTATGGATAAAACTTTCTTAGATTTGCACGAGAAAGAAAAATCC
AAACAAAGATGAAATTGGTGCATGGAGTGAAGTTTGTGATGAAAGGAGAT
AAATTGGATGAAAGAGACAATGTGCTTATTATATTGAATCACAGATGTCG
TGTTGACTGGATGTTTTATTGGATGGCAGTTCTGCGCACTGGACGTTTGC
ACAACGAGAAAATTATCATGAAGAATGAGTTGAAACATATCCCTGGACCA
GATGCATGCACCTTGCAAACCTTGCTTGCCTTGGTTACAAACAGGCTGGT
GTATGCAGTATTTGCTGTACTGCTTCTTACAGCGTAAATGGGAGACCGAC
CGTGGCTACCTAGAGAGATACGTCAATTACTTCATTGATGCCAAATACCC
CTTACAATTCTTTCTTTTCCCTGAGGGAACTGATTTCGACAAAAATGGAA
AAGCAAGCAGTGATCGATTCGCTGATAAAATGGGTCTCCCCAAATATGAT
TACGTCATGCACCCTCGTACCACTGGATTCAATTATTTGGTACAAAAAAC
ACGTGGCAAAGTCATCAATACTGTTTATGACGTAACTTTAGGATATCCAG
TCAATCTTTGTTATGGTGAGATGGACTTAGCAAGAGGTAACTTTCCAAAA
GAGATCCATTGTTTTTTCAAGAGGTATCAAGTAGACGAGCTGCCAACCGA
GGATGGTGCATTAGGTGATTGGTGTAAGGAGAGGTTTGCTGAAAAGGAGG
AACGGTTGAAGGAGTTTTATAAACAAAAGAGGTTCACAGGTCCTGGTACA
GAACAGGATGTCACCACAAGGAAACAAGAAGATCATGCTAATATCACCAA
TTATATCAGTTTGATATTCTGGGTGTCGTTTGTGTTGTATTCCATCCAAG
CAGTTTGGTGTTCATCTTTCTTGTTCTGGTACACCATCATCGTTTCCATC
ATCCATGCTGTTATTTCTGCTGTAGGAGGTATGGATAAAACTTTCTTAGA
TTTGCACGAGAAAGAAAAATCCAAACAAAGATGAAATTGGTGCATGGAGT
GAAGTTTGTGATGAAAGGAGATAAATTGGATGAAAGAGACAATGTGCTTA
TTATATTGAATCACAGATGTCGTGTTGACTGGATGTTTTATTGGATGGCA
GTTCTGCGCACTGGACGTTTGCACAACGAGAAAATTATCATGAAGAATGA
GTTGAAACATATCCCTGGACCAGATGCATGCACCTTGCAAACCTTGCTTG
CCTTGGTTACAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025286-exon-sc0000529-1575043694:228840..229008 | TCONS_00025286-exon-sc0000529-1575043694:228840..229008 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1575043694:221415..221603 | TCONS_00025286-exon-sc0000529-1575043694:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1575043694:218405..219562 | TCONS_00025286-exon-sc0000529-1575043694:218405..219562 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1510915933:228840..229008 | TCONS_00025286-exon-sc0000529-1510915933:228840..229008 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1510915933:221415..221603 | TCONS_00025286-exon-sc0000529-1510915933:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1510915933:218405..219562 | TCONS_00025286-exon-sc0000529-1510915933:218405..219562 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1491911889:228840..229008 | TCONS_00025286-exon-sc0000529-1491911889:228840..229008 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1491911889:221415..221603 | TCONS_00025286-exon-sc0000529-1491911889:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025286-exon-sc0000529-1491911889:218405..219562 | TCONS_00025286-exon-sc0000529-1491911889:218405..219562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:218405..229008 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002123 | Plipid/glycerol_acylTrfase |
| IPR032098 | Acyltransf_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016746 | transferase activity, transferring acyl groups |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016746 |
transferase activity, transferring acyl groups |
Blast
BLAST of TCONS_00025286 vs. Swiss-Prot (Human)
Match: LCLT1 (Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 2.747e-71 Identity = 118/286 (41.26%), Postives = 171/286 (59.79%), Query Frame = 1
Query: 151 LPWLQTELVHGVKFVMKGDKLDERDNVLIILNHRCRVDWMFYWMAVLRTGRLHNEKIIMKNELKHIPGPGWCMQYLLYCFLQRKWETDRGYLERYVNYFIDAKYPLQFFLFPEGTDFDKNGKASSDRFADKMGLPKYDYVMHPRTTGFNYLVQKTR-GKVINTVYDVTLGYPVNLCYGEMDLARGNFPKEIHCFFKRYQVDELPTEDGALGDWCKERFAEKEERLKEFYKQKR---FTGPGTEQDVTTRKQEDHANITNYISLIFWVSFVLYSIQAVWCSSFLFWY 996
LP E + GVK ++ GD + +II+NHR R+DWMF W ++R L EKI +K LK +PG GW MQ Y F+ RKW+ D+ + E ++YF D PLQ +FPEGTD +N K+ S+ FA+K GL KY+YV+HPRTTGF ++V + R GK ++ V+D+T+ YP N+ E L +G+FP+EIH RY +D LPT L WC +R+ EKEERL+ FY+ ++ FTG + + K E + +S+++W F ++ S + WY
Sbjct: 91 LPVALLETMFGVKVIITGDAFVPGERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQLLIFPEGTDLTENSKSRSNAFAEKNGLQKYEYVLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPHNIPQSEKHLLQGDFPREIHFHVHRYPIDTLPTSKEDLQLWCHKRWEEKEERLRSFYQGEKNFYFTG---QSVIPPCKSELRVLVVKLLSILYWTLFSPAMCLLIYLYSLVKWY 373
The following BLAST results are available for this feature:
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