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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025300 ID=TCONS_00025300|Name=TCONS_00025300|organism=Clytia hemisphaerica|type=transcript|length=2688bpRun BLAST on NCBI protein sequence of TCONS_00025300-protein >TCONS_00025300-protein ID=TCONS_00025300-protein|Name=TCONS_00025300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=702bp LENSENVDRIMSTGNYSSNIIPTTIQPNETNGNSIVNESFDFKNNPGLVFRun BLAST on NCBI transcript from alignment at sc0000531:75860..85694+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025300 ID=TCONS_00025300|Name=TCONS_00025300|organism=Clytia hemisphaerica|type=transcript|length=9835bp|location=Sequence derived from alignment at sc0000531:75860..85694+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000531:75860..85694+ >TCONS_00025300 ID=TCONS_00025300|Name=TCONS_00025300|organism=Clytia hemisphaerica|type=CDS|length=33744bp|location=Sequence derived from alignment at sc0000531:75860..85694+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025300 vs. Swiss-Prot (Human)
Match: K1109 (Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2) HSP 1 Score: 421.009 bits (1081), Expect = 8.413e-125 Identity = 230/617 (37.28%), Postives = 340/617 (55.11%), Query Frame = 3
Query: 114 ESFDFKNNPGLVFVLVACCLTGLWLYFITFYNSRLFAIIITKLLRRFYLKDGCLYIGSLSFSILSGKFMFRDVKYVTKDFSIQVVDGLAILKWWLVFKEPEANYYKEVLRDTKKLEIGKCRLNLQLNGLEFHLFNRSDLYNRIEEILKCE-------RYGDARKSVQSLDVLND-ATVNQTTDTEDTYNVWRDLFPVIRCGIRSGKLAIGNRLLENTFWIHFNTANATYSMPDAPCSLDHFTHYIHTQCSDIRMLLSKSPGYKGKTSD-PPRWRNQDFTILHSGEAKITYYMDAAGLFP---------------VEIDEEPESDPQWGIGIVFTKRAEINYGPWADLQRDALQKYFLPNDFQELPVTKPLEAEQRRLHTGLDVNIEFQEGASIEILFTRNEETVAIHIVCGDQNKGGEKPKPSIIHYHQPWMVNEYGYMTNIFVQLQEVEATTSLKFRKFLESDTVEVEINMAIPRMWNHFQHWTCELCFVKATMYFVWEHVDYMTDLINEWSVTTPPDIASFVPYEWEFNFYFRDFELILLVNQFNWVDC-TNEDENSELALCGENLDINFVLPFTHYQPEKSEMKFFFRGETIMLRTFIPESNTIRRSVISLAKN 1889
E F ++N +V++LVA L+ W+ ++T+YNSR +I+T +L R Y K G ++IGS SFS+LSGK M R++ Y+T+D SI++ DG I +WW ++ K+ D K + RL + +N EFH++NRSDLY R++E+ E + D + + + V T+++D + WR L PVI+ + +G+LA GN T I+F+ A TY+ LD F H + + ++R++L SP Y G +D PPR + F ++ S + I YYMD GL P ++ + P P WG+ IV K + NYGPWAD QRD L K+F P D+Q L V++ + + R ++ + A+I++LFT+N ET A+H+ G S + + P V E GY I QL V+ATTS+++R LE++ + IN + PR+WN Q W CEL KAT +F++ ++ TDLI +WS +PPDI SFVPY W F F FE+I NQ NW+DC T + EN LA CGE L+I+F LPFT + P KF RGE + L F+P+ + + S+ L KN
Sbjct: 17 EDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLY-KHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNP------KQKQHDPK----AETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPPKKDDDKTREIGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEENIEGEMSSEDCKLQDLP---PCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVG---------AGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDSPPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLFLPDCHPSKYSLFMLVKN 610 The following BLAST results are available for this feature:
BLAST of TCONS_00025300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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