TCONS_00025355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025355
Unique NameTCONS_00025355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025355 ID=TCONS_00025355|Name=TCONS_00025355|organism=Clytia hemisphaerica|type=transcript|length=289bp
TTTGGGACTCTTTTCGAAAAAGGATGCCAGGATCTTCTGCGAAGGCTTTC
GTTGATACACTTAATGATATCTCAATCACGAATGGAAGGGATTGTTCTAT
TTACTCGCAATTACTGGCTCGTGCATTAAAGAATGGTGTCTCCTACAGCA
cgaaaaaaggttttaattGGATGCAATGTCCTAGCTGTGAAATCTCCCAT
CACAGTTGCCGTGTAGATGGTAACTGTAAACTCTATCGCTTCAAATCTGG
TGGAAATTGTAGACGTGAATCATACTACAAAAACTTcaa
Run BLAST on NCBI

transcript from alignment at sc0000532:31175..31773-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025355 ID=TCONS_00025355|Name=TCONS_00025355|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0000532:31175..31773- (Clytia hemisphaerica)
TTTGGGACTCTTTTCGAAAAAGGATGCCAGGATCTTCTGCGAAGGCTTTC
GTTGATACACTTAATGATATCTCAATCACGAATGGAAGGGTATGGCTATT
TATATGTCTATTCAAATACTGAGTATGTAATTTGTACATTTTGTCTCTAA
AAGATTTTTAGTGCCAAAGCAATAATAGAATCTAATTGTTATAGAAATGA
GAGTTTGATTGAAAACCAACGTAGTTCTCCGACCATAATCCTTACAAATT
TCGGTGTTGATTTTTCTTTAGGATTGTTCTATTTACTCGCAATTACTGGC
TCGTGCATTAAAGAATGGTGTCTCCTACAGCACGAAAAAAGGTTTTAATT
GGATGCAATGTCCTAGCTGTGAAATCTCCCATCACAGTTGCCGTGTAGAT
GGTAACTGTAAACTCTATCGCTTCAAATCTGGTGGAAAGTAGGTTACTGT
TTGTTGACTATCTTTTTACCACAATTATTTTAATTTGAAATGCGTTTGTG
AAACATTCAGTTAACATTAGTTGAAATATTGTAAACCTAAATGGTTTTTA
TTTTGATATTTTCCAGTTGTAGACGTGAATCATACTACAAAAACTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014228XLOC_014228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025355-exon-sc0000532-1575043694:31685..31773TCONS_00025355-exon-sc0000532-1575043694:31685..31773Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1575043694:31336..31502TCONS_00025355-exon-sc0000532-1575043694:31336..31502Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1575043694:31175..31207TCONS_00025355-exon-sc0000532-1575043694:31175..31207Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1510915933:31685..31773TCONS_00025355-exon-sc0000532-1510915933:31685..31773Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1510915933:31336..31502TCONS_00025355-exon-sc0000532-1510915933:31336..31502Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1510915933:31175..31207TCONS_00025355-exon-sc0000532-1510915933:31175..31207Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1491911889:31685..31773TCONS_00025355-exon-sc0000532-1491911889:31685..31773Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1491911889:31336..31502TCONS_00025355-exon-sc0000532-1491911889:31336..31502Clytia hemisphaericaexon
TCONS_00025355-exon-sc0000532-1491911889:31175..31207TCONS_00025355-exon-sc0000532-1491911889:31175..31207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000532supercontigsc0000532:31175..31773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.441492	2.58315	0	0.489055	11.3122	6.11617	4.54086	3.71971	1.72344	1.38248	2.85414	3.03457	1.17449	1.52465	1.61364	3.30612	0.331427	3.25643	1.87726	0.982211	1.52575	0	0.732054	0	1.89604	1.26913	1.21075	0.646071	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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