TCONS_00025366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025366
Unique NameTCONS_00025366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025366 ID=TCONS_00025366|Name=TCONS_00025366|organism=Clytia hemisphaerica|type=transcript|length=983bp
TCAAGCAATGCTAATAATCTTTTCACCTGGAACTTGGACAAAACTTGAAG
ACTTGAAGTTAGAGGATGAAACTTTTGTTGATTCATTTGCACGATTCACT
GATACCGAACAATGTCCAGAAGTTGTAAAAGAAAATGTACAATCTGCAAA
AAGGAGGCACgagaatgaaatgaaaaggtagAGCGAgaacaaagaagaaa
aagacaCACTGAACAGGCAAATATCGACACACATCAAAATTCACAGCCTG
AATCTCAATACTCGTACTATTCTAGTGCCTTCTCACAAGACTCTCAAATG
AGAGAAATGAATTTAGCTAATGAACTTTTAAATGAATTAAAAGATGCCAA
TCCTTCAACCGTTGAAGAAGTAGAGGTGCCATTATTTGATGGAGGACCAG
ACTTTGATTGGCATGAGTATGCTATACAATGCTTAGGAGGCACTTGGCCA
GACAATGTTGGCTCTTGGCTAGACGATATGGATTCTGAAGTTGAGAAACA
AACTGTTAGTTCTTATGGTAGATGTGATTTGCCACAAATTAATCTACTTC
TGGCTAACGAACTGCAGAGGCTGATAATATCTATCAACCTTGACAGATGA
CTGTCAGTTCATAGAGGGGAAAACCCTGAACCATTACGCTTATTGGTTCA
GGGAACTGCAGGCACAGGAAAAACTTACATTATAAAAGCAATAAGTTTTA
TAGCAAGGAGATTGCGTCATAGAAATAATGCAGTGTCGAATCTTGCTCCT
ACTGGAACAGCCAGTCTACTTCTCCCAGGTGGTCGAACAGTTCATTCTAC
CACACCTCCCCTCTCAAAATCCAAGACCAACGACCTTAAGTCAGCTCAAA
TGAGTGACTATCCATTAAATCAAAAGGCCCTGAGAAAGCTTTGGGAAACT
ATTGGGTACAGAGGTAAGGAACTTGAATTGATGGTTTTAAACATGGATGA
ACGTAGCATGCTTTCAAAAAGGCTTCTTGGGTG
Run BLAST on NCBI

protein sequence of TCONS_00025366-protein

>TCONS_00025366-protein ID=TCONS_00025366-protein|Name=TCONS_00025366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MREMNLANELLNELKDANPSTVEEVEVPLFDGGPDFDWHEYAIQCLGGTW
PDNVGSWLDDMDSEVEKQTVSSYGRCDLPQINLLLANELQRLIISINLDR
Run BLAST on NCBI

transcript from alignment at sc0000532:102346..103328

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025366 ID=TCONS_00025366|Name=TCONS_00025366|organism=Clytia hemisphaerica|type=transcript|length=983bp|location=Sequence derived from alignment at sc0000532:102346..103328 (Clytia hemisphaerica)
CACCCAAGAAGCCTTTTTGAAAGCATGCTACGTTCATCCATGTTTAAAAC
CATCAATTCAAGTTCCTTACCTCTGTACCCAATAGTTTCCCAAAGCTTTC
TCAGGGCCTTTTGATTTAATGGATAGTCACTCATTTGAGCTGACTTAAGG
TCGTTGGTCTTGGATTTTGAGAGGGGAGGTGTGGTAGAATGAACTGTTCG
ACCACCTGGGAGAAGTAGACTGGCTGTTCCAGTAGGAGCAAGATTCGACA
CTGCATTATTTCTATGACGCAATCTCCTTGCTATAAAACTTATTGCTTTT
ATAATGTAAGTTTTTCCTGTGCCTGCAGTTCCCTGAACCAATAAGCGTAA
TGGTTCAGGGTTTTCCCCTCTATGAACTGACAGTCATCTGTCAAGGTTGA
TAGATATTATCAGCCTCTGCAGTTCGTTAGCCAGAAGTAGATTAATTTGT
GGCAAATCACATCTACCATAAGAACTAACAGTTTGTTTCTCAACTTCAGA
ATCCATATCGTCTAGCCAAGAGCCAACATTGTCTGGCCAAGTGCCTCCTA
AGCATTGTATAGCATACTCATGCCAATCAAAGTCTGGTCCTCCATCAAAT
AATGGCACCTCTACTTCTTCAACGGTTGAAGGATTGGCATCTTTTAATTC
ATTTAAAAGTTCATTAGCTAAATTCATTTCTCTCATTTGAGAGTCTTGTG
AGAAGGCACTAGAATAGTACGAGTATTGAGATTCAGGCTGTGAATTTTGA
TGTGTGTCGATATTTGCCTGTTCAGTGtgtctttttcttctttgttcTCG
CTctaccttttcatttcattctcGTGCCTCCTTTTTGCAGATTGTACATT
TTCTTTTACAACTTCTGGACATTGTTCGGTATCAGTGAATCGTGCAAATG
AATCAACAAAAGTTTCATCCTCTAACTTCAAGTCTTCAAGTTTTGTCCAA
GTTCCAGGTGAAAAGATTATTAGCATTGCTTGA

Coding sequence (CDS) from alignment at sc0000532:102346..103328

>TCONS_00025366 ID=TCONS_00025366|Name=TCONS_00025366|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000532:102346..103328 (Clytia hemisphaerica)
TCATCTGTCAAGGTTGATAGATATTATCAGCCTCTGCAGTTCGTTAGCCA
GAAGTAGATTAATTTGTGGCAAATCACATCTACCATAAGAACTAACAGTT
TGTTTCTCAACTTCAGAATCCATATCGTCTAGCCAAGAGCCAACATTGTC
TGGCCAAGTGCCTCCTAAGCATTGTATAGCATACTCATGCCAATCAAAGT
CTGGTCCTCCATCAAATAATGGCACCTCTACTTCTTCAACGGTTGAAGGA
TTGGCATCTTTTAATTCATTTAAAAGTTCATTAGCTAAATTCATTTCTCT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014239XLOC_014239Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025366-proteinTCONS_00025366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025366-exon-sc0000532-1491911889:102346..103328TCONS_00025366-exon-sc0000532-1491911889:102346..103328Clytia hemisphaericaexon
TCONS_00025366-exon-sc0000532-1510915933:102346..103328TCONS_00025366-exon-sc0000532-1510915933:102346..103328Clytia hemisphaericaexon
TCONS_00025366-exon-sc0000532-1575043694:102346..103328TCONS_00025366-exon-sc0000532-1575043694:102346..103328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000532supercontigsc0000532:102346..103328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0279317	0	0	0.0487256	0	0	0	0	0	0	0.131764	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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