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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025372 ID=TCONS_00025372|Name=TCONS_00025372|organism=Clytia hemisphaerica|type=transcript|length=962bp
CCCACATCTCAATCACCAAAACGTATCTTGATGCTGACTGCTACTCAGAC
CATAAACTTGTTATATGTAAATGTTTCTTCCGTTtgtttcgaaaaagaaa
aggaaCGAAAGCTCCATGCAGACCGAAATACAGCATTACGCCAGAAAGAA
TTTTAGAACTTCAACGCCGTCTAGATAATGATCTTGTGAACTCTGAAATT
AATTGGGAAAACTTAAAAACTTCTCTGATATCTGCTACGTCAAACACCTT
TCCCAAACAAAGAAAGCAAAACAGAGATtggtttgatgaaaatgatcaac
aGATTCTTACACTTCTTAAAGACAAAAATCGAACCAGACGTGAGATCTAA
CAAGAAgtgagaaagataaaaaatgattgGTTCATCCAAAAAGCGTCAGA
AGCTGAAAGATATCTTTTGGAAAACAATCTGAAAGACTTTTACGCTACTC
TTCGTGAGGTATACGGTCCTTCATCTCGCAATTCACACCCTATCAAATCG
AAAGACGGGAAATTGCTAACAACCAAAGGTGAAATAAAGGAACGCTGGGT
CGAACACTTTTCAGAACTTCTCAACAACGTCACAGAAACCGACGAAACAG
TTCTTGATGAAATCGATCAACGTCCCATCGATTACTCACTTGATGAACCG
ATTACCGAAAAAGAGCTTGACGATGCAATAAAACGGTCTAAACTCGGTAA
AAGTCCAGGTCCCGATGGCATTATTCCTGAAGCAATATCATTTGGTGGAC
AGTCAGTCagaaacttctttttttcattattcaCGATATTCTGGACCACA
CTTAAGTTACCCTCTGATTTAATCGATCCCAACATCACCGTTCTATTTAA
GAAAGGCGATCGTAGTGTCTGCGGAAATTATCGTGGCATATCCTTACTCA
GTTGTGTTGGGAAAATCTTTGCCGATATCGTTTTACACAGAATACAGAAG
CTTGTCAATAAT Run BLAST on NCBI protein sequence of TCONS_00025372-protein >TCONS_00025372-protein ID=TCONS_00025372-protein|Name=TCONS_00025372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
HISITKTYLDADCYSDHKLVICKCFFRLFRKRKGTKAPCRPKYSITPERI
LELQRRLDNDLVNSEINWENLKTSLISATSNTFPKQRKQNRDWFDENDQQ
ILTLLKDKNRTRREI Run BLAST on NCBI transcript from alignment at sc0000532:196114..197075 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025372 ID=TCONS_00025372|Name=TCONS_00025372|organism=Clytia hemisphaerica|type=transcript|length=962bp|location=Sequence derived from alignment at sc0000532:196114..197075 (Clytia hemisphaerica)
ATTATTGACAAGCTTCTGTATTCTGTGTAAAACGATATCGGCAAAGATTT
TCCCAACACAACTGAGTAAGGATATGCCACGATAATTTCCGCAGACACTA
CGATCGCCTTTCTTAAATAGAACGGTGATGTTGGGATCGATTAAATCAGA
GGGTAACTTAAGTGTGGTCCAGAATATCGtgaataatgaaaaaaagaagt
ttctGACTGACTGTCCACCAAATGATATTGCTTCAGGAATAATGCCATCG
GGACCTGGACTTTTACCGAGTTTAGACCGTTTTATTGCATCGTCAAGCTC
TTTTTCGGTAATCGGTTCATCAAGTGAGTAATCGATGGGACGTTGATCGA
TTTCATCAAGAACTGTTTCGTCGGTTTCTGTGACGTTGTTGAGAAGTTCT
GAAAAGTGTTCGACCCAGCGTTCCTTTATTTCACCTTTGGTTGTTAGCAA
TTTCCCGTCTTTCGATTTGATAGGGTGTGAATTGCGAGATGAAGGACCGT
ATACCTCACGAAGAGTAGCGTAAAAGTCTTTCAGATTGTTTTCCAAAAGA
TATCTTTCAGCTTCTGACGCTTTTTGGATGAACcaatcattttttatctt
tctcacTTCTTGTTAGATCTCACGTCTGGTTCGATTTTTGTCTTTAAGAA
GTGTAAGAATCtgttgatcattttcatcaaaccaATCTCTGTTTTGCTTT
CTTTGTTTGGGAAAGGTGTTTGACGTAGCAGATATCAGAGAAGTTTTTAA
GTTTTCCCAATTAATTTCAGAGTTCACAAGATCATTATCTAGACGGCGTT
GAAGTTCTAAAATTCTTTCTGGCGTAATGCTGTATTTCGGTCTGCATGGA
GCTTTCGttccttttctttttcgaaacaAACGGAAGAAACATTTACATAT
AACAAGTTTATGGTCTGAGTAGCAGTCAGCATCAAGATACGTTTTGGTGA
TTGAGATGTGGG Coding sequence (CDS) from alignment at sc0000532:196114..197075 >TCONS_00025372 ID=TCONS_00025372|Name=TCONS_00025372|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000532:196114..197075 (Clytia hemisphaerica)
TTAGATCTCACGTCTGGTTCGATTTTTGTCTTTAAGAAGTGTAAGAATCt
gttgatcattttcatcaaaccaATCTCTGTTTTGCTTTCTTTGTTTGGGA
AAGGTGTTTGACGTAGCAGATATCAGAGAAGTTTTTAAGTTTTCCCAATT
AATTTCAGAGTTCACAAGATCATTATCTAGACGGCGTTGAAGTTCTAAAA
TTCTTTCTGGCGTAATGCTGTATTTCGGTCTGCATGGAGCTTTCGttcct
tttctttttcgaaacaAACGGAAGAAACATTTACATATAACAAGTTTATG
GTCTGAGTAGCAGTCAGCATCAAGATACGTTTTGGTGATTGAGATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025372-exon-sc0000532-1491911889:196114..197075 | TCONS_00025372-exon-sc0000532-1491911889:196114..197075 | Clytia hemisphaerica | exon |
| TCONS_00025372-exon-sc0000532-1510915933:196114..197075 | TCONS_00025372-exon-sc0000532-1510915933:196114..197075 | Clytia hemisphaerica | exon |
| TCONS_00025372-exon-sc0000532-1575043694:196114..197075 | TCONS_00025372-exon-sc0000532-1575043694:196114..197075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000532 | supercontig | sc0000532:196114..197075 . |
Blast
The following BLAST results are available for this feature:
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