TCONS_00025375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025375
Unique NameTCONS_00025375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025375 ID=TCONS_00025375|Name=TCONS_00025375|organism=Clytia hemisphaerica|type=transcript|length=487bp
TTTTGTTAAAGTACAATATCAAACATGAATTGACATCGCCCTACTCGCCA
CACCAAAATGGGACAGCAGAACGAAACTGGAGAACACTTTTCGAGATGGC
ACGATCTTTGTTAATCGAAGCCAACCTACCAAAGTCACTATGGACTTACG
CTGTCCTAACCGCCACACATATTCGAAACCGTTGCTATGTGCAAAGATTG
AAAACTACACCGTACAGCGTAATCACTGGAAGGAAACCCGACATCTCGAA
GATGCATCTATTCGGAAGTGTTTGCTACCCTCTCATCCATGACCCAAAGA
AACTAGACCCTCGATGCAAAAAGGGTTATTTTGTTGGGTACGTTCGCGAC
AGCCCATCATACCTCGTCTATCACCCAGACAAACGTACTGTCATGAAATA
TCGACTCGTAAAGTTCAGCGATAAGTTTGAAACTAAACCGGGATCAGATG
TACTCTTGCCTCCAACTGAACCTGAGGACCAAGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00025375-protein

>TCONS_00025375-protein ID=TCONS_00025375-protein|Name=TCONS_00025375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
LLKYNIKHELTSPYSPHQNGTAERNWRTLFEMARSLLIEANLPKSLWTYA
VLTATHIRNRCYVQRLKTTPYSVITGRKPDISKMHLFGSVCYPLIHDPKK
LDPRCKKGYFVGYVRDSPSYLVYHPDKRTVMKYRLVKFSDKFETKPGSDV
LLPPTEPEDQE
Run BLAST on NCBI

transcript from alignment at sc0000532:227416..227902

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025375 ID=TCONS_00025375|Name=TCONS_00025375|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000532:227416..227902 (Clytia hemisphaerica)
ACTTCTTGGTCCTCAGGTTCAGTTGGAGGCAAGAGTACATCTGATCCCGG
TTTAGTTTCAAACTTATCGCTGAACTTTACGAGTCGATATTTCATGACAG
TACGTTTGTCTGGGTGATAGACGAGGTATGATGGGCTGTCGCGAACGTAC
CCAACAAAATAACCCTTTTTGCATCGAGGGTCTAGTTTCTTTGGGTCATG
GATGAGAGGGTAGCAAACACTTCCGAATAGATGCATCTTCGAGATGTCGG
GTTTCCTTCCAGTGATTACGCTGTACGGTGTAGTTTTCAATCTTTGCACA
TAGCAACGGTTTCGAATATGTGTGGCGGTTAGGACAGCGTAAGTCCATAG
TGACTTTGGTAGGTTGGCTTCGATTAACAAAGATCGTGCCATCTCGAAAA
GTGTTCTCCAGTTTCGTTCTGCTGTCCCATTTTGGTGTGGCGAGTAGGGC
GATGTCAATTCATGTTTGATATTGTACTTTAACAAAA

Coding sequence (CDS) from alignment at sc0000532:227416..227902

>TCONS_00025375 ID=TCONS_00025375|Name=TCONS_00025375|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000532:227416..227902 (Clytia hemisphaerica)
TTCTTGGTCCTCAGGTTCAGTTGGAGGCAAGAGTACATCTGATCCCGGTT
TAGTTTCAAACTTATCGCTGAACTTTACGAGTCGATATTTCATGACAGTA
CGTTTGTCTGGGTGATAGACGAGGTATGATGGGCTGTCGCGAACGTACCC
AACAAAATAACCCTTTTTGCATCGAGGGTCTAGTTTCTTTGGGTCATGGA
TGAGAGGGTAGCAAACACTTCCGAATAGATGCATCTTCGAGATGTCGGGT
TTCCTTCCAGTGATTACGCTGTACGGTGTAGTTTTCAATCTTTGCACATA
GCAACGGTTTCGAATATGTGTGGCGGTTAGGACAGCGTAAGTCCATAGTG
ACTTTGGTAGGTTGGCTTCGATTAACAAAGATCGTGCCATCTCGAAAAGT
GTTCTCCAGTTTCGTTCTGCTGTCCCATTTTGGTGTGGCGAGTAGGGCGA
TGTCAATTCATGTTTGATATTGTACTTTAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014248XLOC_014248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025375-proteinTCONS_00025375-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025375-exon-sc0000532-1491911889:227416..227902TCONS_00025375-exon-sc0000532-1491911889:227416..227902Clytia hemisphaericaexon
TCONS_00025375-exon-sc0000532-1510915933:227416..227902TCONS_00025375-exon-sc0000532-1510915933:227416..227902Clytia hemisphaericaexon
TCONS_00025375-exon-sc0000532-1575043694:227416..227902TCONS_00025375-exon-sc0000532-1575043694:227416..227902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000532supercontigsc0000532:227416..227902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.199027	0.283291	0.932644	2.18571	0	0	0.0207888	1.26756	0	0.24384	0.41211	0	0	0.255979	0.783719	0.606151	0	0	0	2.60723	0	0.923029	0.410987	0.405548	0.584136	0	0	0.286632
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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