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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025387 ID=TCONS_00025387|Name=TCONS_00025387|organism=Clytia hemisphaerica|type=transcript|length=2382bpRun BLAST on NCBI protein sequence of TCONS_00025387-protein >TCONS_00025387-protein ID=TCONS_00025387-protein|Name=TCONS_00025387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp MIRNVAFVLGRQSKIFIRGAHRAANSKQSRFLTHKSVQLPILTAFGSYIVRun BLAST on NCBI transcript from alignment at sc0000533:146178..165194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025387 ID=TCONS_00025387|Name=TCONS_00025387|organism=Clytia hemisphaerica|type=transcript|length=19017bp|location=Sequence derived from alignment at sc0000533:146178..165194+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000533:146178..165194+ >TCONS_00025387 ID=TCONS_00025387|Name=TCONS_00025387|organism=Clytia hemisphaerica|type=CDS|length=6282bp|location=Sequence derived from alignment at sc0000533:146178..165194+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025387 vs. Swiss-Prot (Human)
Match: PGES2 (Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGES2 PE=1 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 3.660e-83 Identity = 137/272 (50.37%), Postives = 185/272 (68.01%), Query Frame = 3
Query: 294 TLYQYATCPFCCKVRSFLDYYGVDYEIVEVNPVSRKEIKFSEYRKVPFLTSKE----HQLNGSSLICSVLKTQLITESEVSKILTYYPILE--NEDGKKKSFDYQNIYNVMY------ETGIGKEAHDKVRDEMKWRRWVDEVFVHTLSPNIYRTWGESLQAMEYITKVGNFSDFERTLIYYSGAVAMYLIGKRLKHRHHLRNEVRESLYEETYRWLKAVGKN-PYQGGDQPNMADLNMYGVLSAIEGYDAFSDLLQNTNIGPWYQRMKTKV 1070
TLYQY TCPFC KVR+FLD++ + Y++VEVNPV R EIKFS YRKVP L ++E QLN SS+I S LKT L++ + +I+TYYP ++ NE GK+ + ++ N Y +M + GKEA +EMKWR+W D+ VH +SPN+YRT E+L + +YI + G F E + Y GA AMYLI KRLK RH L++ VRE LYE +W+ AVGK+ P+ GG +PN+ADL +YGVL +EG DAF DL+Q+T+I PWY R++ +
Sbjct: 103 TLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVT-EFGNKYWLMLNEKEAQQVYGGKEART---EEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQPWYLRVERAI 370 The following BLAST results are available for this feature:
BLAST of TCONS_00025387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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