TCONS_00025402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025402
Unique NameTCONS_00025402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025402 ID=TCONS_00025402|Name=TCONS_00025402|organism=Clytia hemisphaerica|type=transcript|length=2307bp
CCGAATGCGTATAAAAAGCTTTCTACATGCGTGCACACTCATTAATACTC
CTACGCAAGAAGGAACATGCAAGCCATTATTATGATTAGTGGTTTGTCTA
TTAAAGGTCCCGAAATGACTTCAGTTTCCTCTCTTTCGGAAAGCTCTTAA
CACTGTTATGTTATTTTTAGAACACTGCTTAGCAATAGACTGGAGATGAT
GTTAAATGTCTTGGTTTTGAACCcaggggcagtgggtttaccaactgaag
TGAATAAAACAATTCagtaaataatgataaaaaggCTTCAACAAGAGCGT
GATACAGCTGACGATAATCACTGGTCAAAATGTTGGTGGGGACATTTATT
GAAAGATTACAAAAGACGAGTAGATTCTCTCAAAGATTGTAAAATACAAA
TAATCCACTCATCtggaaattatgcaactttacAGTTCCGGGGTGGTTCC
GGGGAAAATACCGTATACGGAAAACAGTCGTTTTATTTACGGAATCAATG
GAACGCAGAAACTGGTCCGCAGTTTGATAATACAAAATCTTACTGGTTTT
CGGATATAGGAAGTAGTGGTTGGATGAATGGAGTTATTAACAGCGATGGT
TTTCAAAACTTGGTCGCAAACGAAGAAATCCGAGAGCGTGCTACAAAGGA
GCAGAGAGAGTATGAAGCAGGTGATGAGATTGAAATACGTGAATTCACGG
AGGAGGAACGAAAGTTTGCTGCAGAGCTATGCTTACCATTTGTTCGGAAA
ATTGATGAAGTTATATCACAAGAAGGAAAGTCGGCGCAAGATTATGGATT
TTGTATAACCGAATGGGAAATGATAGAAGGTCAGACAGGACTGGATGGAT
ACTCACTTTATACCTCTGACGTTACTTTTATAAATAATGATGATGGTTTA
AAGGCTAAAATGTTCCAAAGCTTACAAATTCTATCGGCTGATGTCCATTC
ATCAGAGTGAATTATAGTATATAACGTGCTATTCGTGgcaatttttatta
atttcgccttagcgaaagtattacaataggCATGGTGCGATATCggacga
aaatttagaaaacgaaagtataacTAACACGGTGTAGAAACGTAGAAACT
TCTAGAATATTCTCGAATAGATTCAAAAAATGGATTCACTTGCTAAGATA
AAACCTAGTGTTTTGAGACCGCAAAATGCACAGTTAACGTAACCAAGCAT
TTGTAAACATTCCTCGTGAGAgtttttttaatggctgctcGAGCTTGAGT
TGAGTGGTGTATCATTATAATGTTcgttttttggagtttttttttagatt
atttAAAGAGATTTATATTCGTTTCCAGTTGTacttagtattttatgttt
gtgtagttagtgaatgcaccaactAACTATTATAGGGCTAGGGATCTTGA
CATAGATTTAAAGTATACTTTTCGAACTTCTCCACCACACATTACACTTC
ATCACTACAACaacacaggtatgatcttctATTTTTTGTAGGAAAGAATA
TGTAGTCTATCGAAGTGATAGAAGAAATGCCTTTTGTGTAGGACGCAACG
TTCTCCATGTTGAATACTCCTTTTGGCGAACGCGACGGTCTATTGCATGA
ATAATTGCTCCACACTTCAGTAAGTCCATAGATGCAGGTAAAACAAGCAA
GCAGGAAATTGGCACGCTAACATTCTCCTAAATTAGCACGTCATAAGGCT
GCGAATCCTCTTGGGCATTGCTCAATAAAATGTTAGCTCAAATATTAGGG
TTTTATTTTCGTAATACGGAGCAGGCCAGTCTGGAAATTGCGGCTTGTGC
GCCGGATATCTCCGGCGTAGATTTGAGATCTNATTTTCGTAATACGGAGC
AGGCCAGTCTGGAAATTGCGGCTTGTGTGCCGGATATCTCCGGCGTAGAT
TTGAGGTTTGAGATCTGCTGCTTCCAACTTTTCCCAGTTAAGTTAGCGCA
GCTCCGGCGTAACATTCCCTTCCtttgtaccgtgagattgggtaacttgc
atcagtggaggttaGGTTAACAtgtatagccctcaaatgaatgattCGGC
TGGTCaatgaaatacaaaattaaatcaaaacaaaaatggtagagtagagc
tgtgagttcatttgttttgaagttttgctgctttgattggtcagtcattt
gatggctatgcaagtttccctccactgatgtaagttacccgacttcacgg
taattTCTGGCCCGAATGGGTGGAGTAATTCGATATGCGGAACTGAGTGA
ATAGGTTGTCACGTTATCCCAAACGATTATATAATCAACAACTCCACTGA
ATCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00025402-protein

>TCONS_00025402-protein ID=TCONS_00025402-protein|Name=TCONS_00025402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MIKRLQQERDTADDNHWSKCWWGHLLKDYKRRVDSLKDCKIQIIHSSGNY
ATLQFRGGSGENTVYGKQSFYLRNQWNAETGPQFDNTKSYWFSDIGSSGW
MNGVINSDGFQNLVANEEIRERATKEQREYEAGDEIEIREFTEEERKFAA
ELCLPFVRKIDEVISQEGKSAQDYGFCITEWEMIEGQTGLDGYSLYTSDV
TFINNDDGLKAKMFQSLQILSADVHSSE
Run BLAST on NCBI

transcript from alignment at sc0000533:191694..194279-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025402 ID=TCONS_00025402|Name=TCONS_00025402|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at sc0000533:191694..194279- (Clytia hemisphaerica)
CCGAATGCGTATAAAAAGCTTTCTACATGCGTGCACACTCATTAATACTC
CTACGCAAGAAGGAACATGCAAGCCATTATTATGATTAGTGGTTTGTCTA
TTAAAGGTCCCGAAATGACTTCAGTTTCCTCTCTTTCGGAAAGCTCTTAA
CACTGTTATGTTATTTTTAGAACACTGCTTAGCAATAGACTGGAGATGAT
GTTAAATGTCTTGGTTTTGAACCCAGGGGCAGTGGGTTTACCAACTGAAG
GTATGTGCGGCGAAAAAAATGGCTTTTAGAATCGCACCCTTACAGTGCAG
AAAAAAATTGGTGAAATTCATACCCTTACAGTGCATTTTTTCAAATTTTA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTTTTCAAGTGAATAAAACAATTCAGTAAA
TAATGATAAAAAGGCTTCAACAAGAGCGTGATACAGCTGACGATAATCAC
TGGTCAAAATGTTGGTGGGGACATTTATTGAAAGATTACAAAAGACGAGT
AGATTCTCTCAAAGATTGTAAAATACAAATAATCCACTCATCTGGAAATT
ATGCAACTTTACAGTTCCGGGGTGGTTCCGGGGAAAATACCGTATACGGA
AAACAGTCGTTTTATTTACGGAATCAATGGAACGCAGAAACTGGTCCGCA
GTTTGATAATACAAAATCTTACTGGTTTTCGGATATAGGAAGTAGTGGTT
GGATGAATGGAGTTATTAACAGCGATGGTTTTCAAAACTTGGTCGCAAAC
GAAGAAATCCGAGAGCGTGCTACAAAGGAGCAGAGAGAGTATGAAGCAGG
TGATGAGATTGAAATACGTGAATTCACGGAGGAGGAACGAAAGTTTGCTG
CAGAGCTATGCTTACCATTTGTTCGGAAAATTGATGAAGTTATATCACAA
GAAGGAAAGTCGGCGCAAGATTATGGATTTTGTATAACCGAATGGGAAAT
GATAGAAGGTCAGACAGGACTGGATGGATACTCACTTTATACCTCTGACG
TTACTTTTATAAATAATGATGATGGTTTAAAGGCTAAAATGTTCCAAAGC
TTACAAATTCTATCGGCTGATGTCCATTCATCAGAGTGAATTATAGTATA
TAACGTGCTATTCGTGGCAATTTTTATTAATTTCGCCTTAGCGAAAGTAT
TACAATAGGCATGGTGCGATATCGGACGAAAATTTAGAAAACGAAAGTAT
AACTAACACGGTGTAGAAACGTAGAAACTTCTAGAATATTCTCGAATAGA
TTCAAAAAATGGATTCACTTGCTAAGATAAAACCTAGTGTTTTGAGACCG
CAAAATGCACAGTTAACGTAACCAAGCATTTGTAAACATTCCTCGTGAGA
GTTTTTTTAATGGCTGCTCGAGCTTGAGTTGAGTGGTGTATCATTATAAT
GTTCGTTTTTTGGAGTTTTTTTTTAGATTATTTAAAGAGATTTATATTCG
TTTCCAGTTGTACTTAGTATTTTATGTTTGTGTAGTTAGTGAATGCACCA
ACTAACTATTATAGGGCTAGGGATCTTGACATAGATTTAAAGTATACTTT
TCGAACTTCTCCACCACACATTACACTTCATCACTACAACAACACAGGTA
TGATCTTCTATTTTTTGTAGGAAAGAATATGTAGTCTATCGAAGTGATAG
AAGAAATGCCTTTTGTGTAGGACGCAACGTTCTCCATGTTGAATACTCCT
TTTGGCGAACGCGACGGTCTATTGCATGAATAATTGCTCCACACTTCAGT
AAGTCCATAGATGCAGGTAAAACAAGCAAGCAGGAAATTGGCACGCTAAC
ATTCTCCTAAATTAGCACGTCATAAGGCTGCGAATCCTCTTGGGCATTGC
TCAATAAAATGTTAGCTCAAATATTAGGGTTTTATTTTCGTAATACGGAG
CAGGCCAGTCTGGAAATTGCGGCTTGTGCGCCGGATATCTCCGGCGTAGA
TTTGAGATCTNATTTTCGTAATACGGAGCAGGCCAGTCTGGAAATTGCGG
CTTGTGTGCCGGATATCTCCGGCGTAGATTTGAGGTTTGAGATCTGCTGC
TTCCAACTTTTCCCAGTTAAGTTAGCGCAGCTCCGGCGTAACATTCCCTT
CCTTTGTACCGTGAGATTGGGTAACTTGCATCAGTGGAGGTTAGGTTAAC
ATGTATAGCCCTCAAATGAATGATTCGGCTGGTCAATGAAATACAAAATT
AAATCAAAACAAAAATGGTAGAGTAGAGCTGTGAGTTCATTTGTTTTGAA
GTTTTGCTGCTTTGATTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCT
CCACTGATGTAAGTTACCCGACTTCACGGTAATTTCTGGCCCGAATGGGT
GGAGTAATTCGATATGCGGAACTGAGTGAATAGGTTGTCACGTTATCCCA
AACGATTATATAATCAACAACTCCACTGAATCCAGC

Coding sequence (CDS) from alignment at sc0000533:191694..194279-

>TCONS_00025402 ID=TCONS_00025402|Name=TCONS_00025402|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000533:191694..194279- (Clytia hemisphaerica)
ATGATAAAAAGGCTTCAACAAGAGCGTGATACAGCTGACGATAATCACTG
GTCAAAATGTTGGTGGGGACATTTATTGAAAGATTACAAAAGACGAGTAG
ATTCTCTCAAAGATTGTAAAATACAAATAATCCACTCATCTGGAAATTAT
GCAACTTTACAGTTCCGGGGTGGTTCCGGGGAAAATACCGTATACGGAAA
ACAGTCGTTTTATTTACGGAATCAATGGAACGCAGAAACTGGTCCGCAGT
TTGATAATACAAAATCTTACTGGTTTTCGGATATAGGAAGTAGTGGTTGG
ATGAATGGAGTTATTAACAGCGATGGTTTTCAAAACTTGGTCGCAAACGA
AGAAATCCGAGAGCGTGCTACAAAGGAGCAGAGAGAGTATGAAGCAGGTG
ATGAGATTGAAATACGTGAATTCACGGAGGAGGAACGAAAGTTTGCTGCA
GAGCTATGCTTACCATTTGTTCGGAAAATTGATGAAGTTATATCACAAGA
AGGAAAGTCGGCGCAAGATTATGGATTTTGTATAACCGAATGGGAAATGA
TAGAAGGTCAGACAGGACTGGATGGATACTCACTTTATACCTCTGACGTT
ACTTTTATAAATAATGATGATGGTTTAAAGGCTAAAATGTTCCAAAGCTT
ACAAATTCTATCGGCTGATGTCCATTCATCAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014266XLOC_014266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025402-proteinTCONS_00025402-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025402-exon-sc0000533-1575043694:194030..194279TCONS_00025402-exon-sc0000533-1575043694:194030..194279Clytia hemisphaericaexon
TCONS_00025402-exon-sc0000533-1575043694:191694..193750TCONS_00025402-exon-sc0000533-1575043694:191694..193750Clytia hemisphaericaexon
TCONS_00025402-exon-sc0000533-1510915933:194030..194279TCONS_00025402-exon-sc0000533-1510915933:194030..194279Clytia hemisphaericaexon
TCONS_00025402-exon-sc0000533-1510915933:191694..193750TCONS_00025402-exon-sc0000533-1510915933:191694..193750Clytia hemisphaericaexon
TCONS_00025402-exon-sc0000533-1491911889:194030..194279TCONS_00025402-exon-sc0000533-1491911889:194030..194279Clytia hemisphaericaexon
TCONS_00025402-exon-sc0000533-1491911889:191694..193750TCONS_00025402-exon-sc0000533-1491911889:191694..193750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:191694..194279 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9975	9.4101	4.53331	4.46376	1.85681	1.37991	2.69598	3.00215	2.32638	2.75085	2.46749	3.67794	2.22625	2.35173	3.21214	2.98716	2.97136	2.82318	1.78301	1.59233	1.72612	1.58993	5.4942	4.05739	2.60883	3.06385	1.77054	1.9589	3.9799	3.90661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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