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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025501 ID=TCONS_00025501|Name=TCONS_00025501|organism=Clytia hemisphaerica|type=transcript|length=827bp
atttagtgaaaGAACTTTGGAGAAGATATTGATATCATTTCACGTTAGAG
AATTTGATCAAGATGGTTGAAGCAAAGAAAGTTGTAGTTTTGATTGCATG
TGTTGCAGTTTTCGTATTATTATCAGCTTCTACTGGTGGTGTTGGGTGGT
TACATTACGAGGACGTTATAGCGGTGGACGGATTGTCGAACGGAGCATCT
GGAGACTTAAGCGCAGGTTTATTCAGATTCTGCTTTAAAGCTAAAACTGA
GGCTCGTCAATCTTGCAAAGATGTGTCAGATCTCATAGAGGTCACTGTCA
AACGTAAGGTGATTCAAGCATTCATGATCTTGTCTGTGTTAGCATCCATC
GCAGCTGTCGTGTGTGTTATCTTACAAATGGTCACTGACAAAATCTCTCC
TAAACTTATCTCCTGGCTTATAATTGATGCTTCCACTTCGGCGTTGGTTG
GTTTGGCAATCTACACTCACGACCATGAAAACGATAATAGTTTAAATGGC
GTAACTTTTTACTATGGCTGGTCTTATGCATTAGGGTGGGTTGGCGCTAT
AATCGCCCTGATTGTTGGTGTAGTGGTTCGAGTAGCTTTTGAACTGAAAT
GAAATCACTGTTGATTTTGGCTGAACTATAAATTTTGcttaattttagca
attttagatttttaactAATATTAGTGTAGTTAACTATGCTAGCGTTAGT
ATTGTTTTTACGCAATATGTATTGTTTTGGCGggttttccgattttttgt
atTATGATTAGGGcactttttatactttttcttaatttttctagAATGTT
ACTTTGAGCAAAGAAAAAAACCACAAC Run BLAST on NCBI protein sequence of TCONS_00025501-protein >TCONS_00025501-protein ID=TCONS_00025501-protein|Name=TCONS_00025501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MVEAKKVVVLIACVAVFVLLSASTGGVGWLHYEDVIAVDGLSNGASGDLS
AGLFRFCFKAKTEARQSCKDVSDLIEVTVKRKVIQAFMILSVLASIAAVV
CVILQMVTDKISPKLISWLIIDASTSALVGLAIYTHDHENDNSLNGVTFY
YGWSYALGWVGAIIALIVGVVVRVAFELK Run BLAST on NCBI transcript from alignment at sc0000538:18710..22384+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025501 ID=TCONS_00025501|Name=TCONS_00025501|organism=Clytia hemisphaerica|type=transcript|length=3675bp|location=Sequence derived from alignment at sc0000538:18710..22384+ (Clytia hemisphaerica)
atttagtgaaaGAACTTTGGAGAAGATATTGATATCATTTCACGTTAGAG
GTaattataaaatttcaaattgattagTCTGGTATAACTAAGTACGGTAA
CATAATCATAACAGAGTTATTGAATATTGTATTAGGCTAatacttatatt
tgaaatattgtattaatatttttattttcaaaaaaaatgctaaattaTAT
TGTGAAAGATTTGTAAAAAGCGTTAAAAAAACATAATCATAACTTAATCG
TACGGTTGTAAGCAAATTTTTGCAATATTTGTTTGTTAACATGCAAATAA
TCCTTGTTAAGCTCGTCATGTCTCACTGTTTCACTTCAAGCAATTATAAA
CAGCAACAAGAATTTTGACGTGAGCTTTTGCCGGTTTCTGTACAGCCATT
AGCCCACCTCTCCACTAGCATATAGTCAAATGATGCTCCACTCGTTGATG
TGTCGTATCCAGAGCCActtgtattactttttaattttactgatAATAAA
TCATTACAATCCTttcgtgagcgctatcagaatcataaaaaaatcgaatt
tagGGACTTGGTTCGAGTTTATGCTCGTTGCATTCTTTCCCCAAAAAAAC
TTTAGATGTGAGATGTGCATCTttcgtcaaaatttaaaatattatttcga
TAATTATAACAAAAGTTGATTAAATGTCATCAAATTGGCAGAAATCCACG
AAAAATCGAGGCTATTTGCGAATTGCAGAAGATTTTTATGAGAGAACATT
TGCTTAGACTGGATCTTTTTTGACGGATGTGTTTAAAGTTtctaaaaatt
aataagcgggcgATTTTGTTTATTCGGAACCTTAGAGTAGTAAAGTGGAA
GATCAACTTAAgatttgatgggtcatttatcatCAAATTGGTCTATAGTA
GTTTAAGAATTAtacagaaatgaaaaaaaaatcattttctgaGAAGAACC
TATCAAATTTTGAGACATATTACGCATCATCAATTCCATTGTTTAAGTCA
TGAAAACAATAACCAAGTTTCCAAAAATCACAATAcacagaaaaatttaa
atagCTAAAAGATATGGTTTTTTTAGCAGAAATGCCACTTTTATTATCGC
catgaatttattatagacactgtaaaaacaacgtataaaacggtggagag
cgaagcattgtctttcttttgtttaagaaaacaaTCAAGGATCTAGCTTT
gcccgcaaaggacaactgtcatggcggctcgaagctctctgatttttaaa
aattattgataatctcatttctaaaaagtcctctatctttatctttttgt
acttttactcgccaaaaatttggaaataaatgCTGAAATACTTAACGGAT
ACATGTATTAAATCTGTtgtgacaaaaacatcatcagacaagaaaaatca
aacaaaaggccTAAAATGACACAGAACTTTAAGTTGGCAATATCTTTCTA
ACATCTTTCCGAGAAGAGCTAAGATCGACATATatgagacttgagtgtct
tggcttcaCCGTGGTATGAAAATATTGTGGAGGCTCGTGGTGGATCGGTG
GTTTCATTgaggttaaattttgaaaatttctggtgtcaacattaaatttt
tcatacatagcatgtttttcgtatctttcttgcaacttgaaacgtcataa
cgacacgtaattagcaattattttgatgcgttCGCCTCTCTAAGGAAAGC
TTAATTTTCATTTGGGAATTAAAATGACTGtgttaagatgaaaaaaatga
ttaaaatgttacgaaaaatcgtttaatgaaggaaggagagtgaacaataa
tgtcattactgcggacaaggctagaacatgagaaatcaatgaaaatatag
cTTGTTGgttatccagtgtctataataaattcttgtTATCGCTTTGCTAA
AGAAATCAGCGTTACTTTCTAATTTTCGGGGTCTTTTTAACCGAAAATTA
GACCGAATTTTAGGCTAAATTGGGAATAAAGTAAATTAATTTAGGAGACC
TTTAAGATTTTCAAGTCTTTCTAATTTTAGTTGCAATTATAAACACTTTA
TTCAGGTTAAAGGTAACATATCAGTGTCTTTGTTAGAAACCTTGTTAGTT
CTAATGAAAAAGGTTTCATTTGCAATCACATTATGCTCGATTGCGAAAAA
GGCTATACGGTAACAAAATTACTTCGTGAGAAATTTTCCTCGGGCTGAGT
TGCCTTGGGAGAAAGTTGGTTCGAAAAAAAGTTGACTCGTGAGTTAATCG
CGTCAACTCTCTGAAAGGCGATGGGAAAACGACGTGGTGAGGAATTTCTG
GGGATAGTTTATCAAAGTGTGGTGCTCTTTTTAGAGACTTTTTGTTATCG
GTGCCCctttatacaccttttcgaccgtagcccagtctttttttcatgcc
taaagacaatagaaaaaagtataaaaaaggattggatcgagtttagggtg
gtagaAAATTCCCGTGCAGctattggcggctacggtcggaAAGGTGTATT
AATATTATTGCTCCCTCATTTCTCACCTCGCTCTCTTCAAAACAGTTCTT
CTGAAGTGGTGGAGGCACTagattcaattttttgtatttttgttatCTTT
CAGAATTTGATCAAGATGGTTGAAGCAAAGAAAGTTGTAGTTTTGATTGC
ATGTGTTGCAGTTTTCGTATTATTATCAGCTTCTACTGGTGGTGTTGGGT
GGTTACATTACGAGGACGTTATAGCGGTGGACGGTAATACAAAGAAATTC
TtattctaccgggtgcgcctTTAAAGTTAACTTTTCCgagatctaaaatt
tttgaaaaatgaatccTTTTACATCgtaaagaagaaagattaacttaaat
tttgacgggtcatttattaaatttggtttattagatcaaaagttaatctc
gattgaatgaaaaagttactttcaaaaagtgctcgaaaacgttgagAATC
AGcctataggaagtatatctatagaggtctgcgattcagactaagtaggg
tcaatttcaaaattttcatcttatTTAGGATTGTCGAACGGAGCATCTGG
AGACTTAAGCGCAGGTTTATTCAGATTCTGCTTTAAAGCTAAAACTGAGG
CTCGTCAATCTTGCAAAGATGTGTCAGATCTCATAGAGGTCACTGTCAAA
CGTAAGGTGATTCAAGCATTCATGATCTTGTCTGTGTTAGCATCCATCGC
AGCTGTCGTGTGTGTTATCTTACAAATGGTCACTGACAAAATCTCTCCTA
AACTTATCTCCTGGCTTATAATTGATGCTTCCACTTCGGCGTTGGTTGGT
TTGGCAATCTACACTCACGACCATGAAAACGATAATAGTTTAAATGGCGT
AACTTTTTACTATGGCTGGTCTTATGCATTAGGGTGGGTTGGCGCTATAA
TCGCCCTGATTGTTGGTGTAGTGGTTCGAGTAGCTTTTGAACTGAAATGA
AATCACTGTTGATTTTGGCTGAACTATAAATTTTGcttaattttagcaat
tttagatttttaactAATATTAGTGTAGTTAACTATGCTAGCGTTAGTAT
TGTTTTTACGCAATATGTATTGTTTTGGCGggttttccgattttttgtat
TATGATTAGGGcactttttatactttttcttaatttttctagAATGTTAC
TTTGAGCAAAGAAAAAAACCACAAC Coding sequence (CDS) from alignment at sc0000538:18710..22384+ >TCONS_00025501 ID=TCONS_00025501|Name=TCONS_00025501|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000538:18710..22384+ (Clytia hemisphaerica)
ATGGTTGAAGCAAAGAAAGTTGTAGTTTTGATTGCATGTGTTGCAGTTTT
CGTATTATTATCAGCTTCTACTGGTGGTGTTGGGTGGTTACATTACGAGG
ACGTTATAGCGGTGGACGGATTGTCGAACGGAGCATCTGGAGACTTAAGC
GCAGGTTTATTCAGATTCTGCTTTAAAGCTAAAACTGAGGCTCGTCAATC
TTGCAAAGATGTGTCAGATCTCATAGAGGTCACTGTCAAACGTAAGGTGA
TTCAAGCATTCATGATCTTGTCTGTGTTAGCATCCATCGCAGCTGTCGTG
TGTGTTATCTTACAAATGGTCACTGACAAAATCTCTCCTAAACTTATCTC
CTGGCTTATAATTGATGCTTCCACTTCGGCGTTGGTTGGTTTGGCAATCT
ACACTCACGACCATGAAAACGATAATAGTTTAAATGGCGTAACTTTTTAC
TATGGCTGGTCTTATGCATTAGGGTGGGTTGGCGCTATAATCGCCCTGAT
TGTTGGTGTAGTGGTTCGAGTAGCTTTTGAACTGAAATGAATGGTTGAAG
CAAAGAAAGTTGTAGTTTTGATTGCATGTGTTGCAGTTTTCGTATTATTA
TCAGCTTCTACTGGTGGTGTTGGGTGGTTACATTACGAGGACGTTATAGC
GGTGGACGGATTGTCGAACGGAGCATCTGGAGACTTAAGCGCAGGTTTAT
TCAGATTCTGCTTTAAAGCTAAAACTGAGGCTCGTCAATCTTGCAAAGAT
GTGTCAGATCTCATAGAGGTCACTGTCAAACGTAAGGTGATTCAAGCATT
CATGATCTTGTCTGTGTTAGCATCCATCGCAGCTGTCGTGTGTGTTATCT
TACAAATGGTCACTGACAAAATCTCTCCTAAACTTATCTCCTGGCTTATA
ATTGATGCTTCCACTTCGGCGTTGGTTGGTTTGGCAATCTACACTCACGA
CCATGAAAACGATAATAGTTTAAATGGCGTAACTTTTTACTATGGCTGGT
CTTATGCATTAGGGTGGGTTGGCGCTATAATCGCCCTGATTGTTGGTGTA
GTGGTTCGAGTAGCTTTTGAACTGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025501-exon-sc0000538-1491911889:18710..18759 | TCONS_00025501-exon-sc0000538-1491911889:18710..18759 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1510915933:18710..18759 | TCONS_00025501-exon-sc0000538-1510915933:18710..18759 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1575043694:18710..18759 | TCONS_00025501-exon-sc0000538-1575043694:18710..18759 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1491911889:21313..21442 | TCONS_00025501-exon-sc0000538-1491911889:21313..21442 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1510915933:21313..21442 | TCONS_00025501-exon-sc0000538-1510915933:21313..21442 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1575043694:21313..21442 | TCONS_00025501-exon-sc0000538-1575043694:21313..21442 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1491911889:21738..22384 | TCONS_00025501-exon-sc0000538-1491911889:21738..22384 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1510915933:21738..22384 | TCONS_00025501-exon-sc0000538-1510915933:21738..22384 | Clytia hemisphaerica | exon |
| TCONS_00025501-exon-sc0000538-1575043694:21738..22384 | TCONS_00025501-exon-sc0000538-1575043694:21738..22384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:18710..22384 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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