TCONS_00025517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025517
Unique NameTCONS_00025517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025517 ID=TCONS_00025517|Name=TCONS_00025517|organism=Clytia hemisphaerica|type=transcript|length=1527bp
CGTTTGTGAACCTGCTGAAGATTTAGCAATGAAATCGAATTGTCGATATT
CCTTCGATACTGGCACGACTTGGAAAGAGATCACACCATTTGTTTCCCAA
TTGAAGTTCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAacaa
agtgaaatatttttgtacatgGAACATTCAAACCTTACGATTGGATTATA
TCGAAGAGTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCA
GTAACAGGGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGG
TGATGTCCCAACGCTAGGGTtGAGCTCATTGGGCATACACAAACAAAACG
GTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAAATTGATGCGATTGT
CATAAACCTCANAAGTCATATTAAAATCCTACCAGatttttcaaaacatt
attCGAAGTTGAGCATGAAGAGTTGGTTACATGTGACAACCTCATCACAA
GGACAAGTTCTTCTCGTTTGTGAACCTGCTGAAGATTTAGCAATGAAATC
CAATTGTCGATATTCCTTCGATACTGGCACGACTTGGAAAGAGATCACAC
CATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAGGATTTCTTTTAT
GGTTATTGCAacaaagtgaaatatttttgtacatgGAACATTCAAACCTT
ACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGAAACTACTTGACT
TGAATACACAAGCAGTAACAGGGTTAGATGATATGACTTTAGTCCCACAA
CCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTtgAGCTCATTGGGCAT
ACACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAA
ATTGATGCGATTGCCATAAGCCTCGATGACTATCCCAGGTATCCATACCA
CAACACAATGGTGAGGTGAGATTTAATGGACATTAATGGTTCACACCAAA
TTAACACTTGGCAAAAAACTTCGAGACGAATCCCAGATTTTTAGGACTAA
TCATCCTCTCTAACGTCATCAACCAGAAGTAATTCAAAATACACAGAACT
GGAAGGATGACGATTCTCAGTTTTCGAATGGATAGTACAATAAGAGCTTG
ATATACTTCGTCGAATAGGGTGAAAATATAAAACTGGTATCAAACTTCAA
ACTAAAGCTGATCTTAATTTCACCCAAGGACCGCTAGGGATTTTCGCTGG
AAACCCCCATGATTTCGTTAAGGTCCTACTTAGACGACACAATATATTGA
TgtacaatatttgacaatatcgttttcggaccgtaatATAAGAAGTAAAT
AACATGTGCTctattattataaaaaggaatttactttctgtaaacaatcc
cccatGTATTATTAGAAAATTGCAAatcaagctgacaatatattgtggac
accttttcaatatattgccggcactcAGCAATTGCCTGACATTATATTGT
GAGGTGTATGTAGCCCGTGAAATTGAT
Run BLAST on NCBI

protein sequence of TCONS_00025517-protein

>TCONS_00025517-protein ID=TCONS_00025517-protein|Name=TCONS_00025517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MKSWLHVTTSSQGQVLLVCEPAEDLAMKSNCRYSFDTGTTWKEITPFVSQ
LKFFVPSEDFFYGYCNKVKYFCTWNIQTLRLDYIEESLFNEKLLDLNTQA
VTGLDDMTLVPQPSADGDVPTLGLSSLGIHKQNGGGSWDLTYIWLN
Run BLAST on NCBI

transcript from alignment at sc0000538:200867..204615-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025517 ID=TCONS_00025517|Name=TCONS_00025517|organism=Clytia hemisphaerica|type=transcript|length=3749bp|location=Sequence derived from alignment at sc0000538:200867..204615- (Clytia hemisphaerica)
CGTTTGTGAACCTGCTGAAGATTTGTAAGTGTTTAGTTGAGATAGTTTAT
CAGAAGATCTCCTGAGGGTTTTTCAACGTAAATACAACATGTGAAAATTG
GTTATCCTGTATAGAAAACTAAAAATCTTCATCATACTTTTCGGCCTCTT
CTAGACATAGCAAAATCTTTTTTTTCATCTTTTTGTTTATTTAATTTTGT
AGAGCAATGAAATCGAATTGTCGATATTCCTTCGATACTGGCACGACTTG
GAAAGGTAATGATACTTTTTTATAATTGCCTTCTCCTAATGTGTAAACCA
TTTCTATCCGAATACTATGTCATATTAATTGGTGTGCCCCTTTTTCAGCA
CTGAAAAAAGTTACTACTAGTGGTAGTGGTGCAGCAAAAATTTTCCAAAA
CGATAGATAATAGTCCCATTGAGTAACTACACGGCCCTCTGCCAACTCAG
CAAATTGGACTTCAACACCACTCTCCCCTCTCTTTGAGGCTCAAGATCTT
TTCGAAAGCTAAAGAAATTCTTATATACATATATAGACGATTATCAAATC
ATGAAGAACGGTGAAGAAAATAGTGCTCAATAACAAGTAGAGCTAAATCA
TTTCATATATTTCCTCTTTTTAATTTCTGAAGAGAAATATATGAAATGAT
ATAGACGATTATGTTAGATTGAAGCAATACTGTCTATTTGTGAATTCCAA
TACCCTTTCTTCTTCCTGTTACAGAGATCACACCATTTGTTTCCCAATTG
AAGTTCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAACAAAGT
GAAATATTTTTGTACATGGAACATTCAAACCTTACGATTGGATTATATCG
AAGAGTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCAGTA
ACAGGGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGA
TGTCCCAACGCTAGGGTGTAAGTAATTTCTAATGTTATTTTTCCAACCTT
TAATGCATGTTCAACTGAAAATAAATAACCGAATGTCGTTTGATAGGGTT
TTAGCCTGGGGATTTTAGTGAGAAGTTTGGAAAGCAATCTTTGATAGACT
TTTAAGGTAGGATCAAACCTTTAAAAAGTACACTTCAAAAAAACAATATT
GAATAATATTTTAAAACGCATCAGATTGACTGATAGGTGCTGTTAAATCC
TATGCTTTCTTTGGTTATCTTGAAGTGAATTGTTTAAAATTGAGAATAAT
TGTTTTTTCCTGACCAGAAAGTTCTTGAAAGAAAAACCAAAGATGATCTC
TGCATCTCATTAATTCATCACTTCTCTCATTTTTTTTATAGTGAGCTCAT
TGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATC
TGGTTAAATTGATGCGATTGTCATAAACCTCANAAGTCATATTAAAATCC
TACCAGGTGAGTGTTGGTTGAGCTGCTAGAGATTATCAAAATATTTTTCA
ATCTTTATCCCAACCTAATTTTTCGGAGATTAAATCTCCAAGAACTTTGA
GAAATCTCCAGAGAAGTTTGTTTAACATCATATACCCTCTTAAGTTTTTA
TCCAAATCGGCAAATTTGCTGATAAGTAATTTTTTCGTGTTTTTTTTACA
TACAGATTTTTCAAAACATTATTCGAAGTTGAGCATGAAGAGTTGGTTAC
ATGTGACAACCTCATCACAAGGACAAGTTCTTCTCGTTTGTGAACCTGCT
GAAGATTTGTAAGTGTTTAATTAAGATAGTTTATCAGTTTTTCAACGTAA
ATACAACATGTGAAAATTGGTTATCTTGTATAGAAAACTAAAAATCTTCA
TCATACTTTTCGGCCTCTTCTAGACATAGTAAAATCTTTTTTTTCATCTT
TTTGTTTATTTAATTTTGTAGAGCAATGAAATCCAATTGTCGATATTCCT
TCGATACTGGCACGACTTGGAAAGGTAATGATACTTTTTTATAATTGCCT
TCTCATAATGTGTAAACCGTTTCTATCCGAATACTATGGCAAATTGGTGT
ACCCCTTTTTCAGCACTGAAAAAAGTTACTGCTAGTGGTAGTGGTGCAGC
TAAAATTTTCCGAAACGATAGATAATAGTCCCATTGAGTAACTGCATGTC
CCCTCTGCCAATTCAGCAAATTGGATGGAGAAACTCCAACACCACTCTCC
CCTCTCTTTGAGGCTCAAGATCTTTTCGAAAGCTAAAGAAATTCTTATAT
ACATATATAGACGATTATCAAATCATGAAGAACGGTGAAGAAAATAGTGC
TCAATAACAAGTAGAGCTAAATCATTTCATATATTTCCTCTTTTTAATTT
CTGAAGAGAAATATATGAAATGATATAGACGATTATGTTAGATTGAAGCA
ATACTGTCTATTTGTGAATTCCAATACCCTTTCTTCTTCCTGTTACAGAG
ATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAGGATTT
CTTTTATGGTTATTGCAACAAAGTGAAATATTTTTGTACATGGAACATTC
AAACCTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGAAACTA
CTTGACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGACTTTAGT
CCCACAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTGTAAGTAAT
TTCTAATGTTATTTTTCCAACCTTTAATGCATGTTCAACTGAAAATAAAT
AACCGAAGGTCGTTTGAGCCTGGGGATTTTAGTGAGAAGTTTGGAAAGCA
ATCTTTGATAGACTTTTAAGGTAGGATCAAACCTTTAAAAAATACAGTTC
AAAAAAACAATGTTGAATAATATTTTAAAACGCATCAGATTGACTGATAG
GTGCTGTTAAATCCTACGCTTTCTTCGGTTATCTTGAAGTGAATTGTTTA
AAATTGAGAATAATTGTTTTTTCCTGACCAGAATGTTCTTGAAAGAAAAA
CCAAAGATGATCTCTGCATCTCATTAATTCATCACTTCTCTCATTTTTTT
TTATAGTGAGCTCATTGGGCATACACAAACAAAACGGTGGAGGGAGCTGG
GATCTAACCTACATCTGGTTAAATTGATGCGATTGCCATAAGCCTCGATG
ACTATCCCAGGTATCCATACCACAACACAATGGTGAGGTGAGATTTAATG
GACATTAATGGTTCACACCAAATTAACACTTGGCAAAAAACTTCGAGACG
AATCCCAGATTTTTAGGACTAATCATCCTCTCTAACGTCATCAACCAGAA
GTAATTCAAAATACACAGAACTGGAAGGATGACGATTCTCAGTTTTCGAA
TGGATAGTACAATAAGAGCTTGATATACTTCGTCGAATAGGGTGAAAATA
TAAAACTGGTATCAAACTTCAAACTAAAGCTGATCTTAATTTCACCCAAG
GACCGCTAGGGATTTTCGCTGGAAACCCCCATGATTTCGTTAAGGTCCTA
CTTAGACGACACAATATATTGATGTACAATATTTGACAATATCGTTTTCG
GACCGTAATATAAGAAGTAAATAACATGTGCTCTATTATTATAAAAAGGA
ATTTACTTTCTGTAAACAATCCCCCATGTATTATTAGAAAATTGCAAATC
AAGCTGACAATATATTGTGGACACCTTTTCAATATATTGCCGGCACTCAG
CAATTGCCTGACATTATATTGTGAGGTGTATGTAGCCCGTGAAATTGAT

Coding sequence (CDS) from alignment at sc0000538:200867..204615-

>TCONS_00025517 ID=TCONS_00025517|Name=TCONS_00025517|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000538:200867..204615- (Clytia hemisphaerica)
TGAGCTCATTGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATCTA
ACCTACATCTGGTTAAATTGAAGATCACACCATTTGTTTCCCAATTGAAG
TTCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAACAAAGTGAA
ATATTTTTGTACATGGAACATTCAAACCTTACGATTGGATTATATCGAAG
AGTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCAGTAACA
GGGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGATGT
CCCAACGCTAGGGTAGCAATGAAATCCAATTGTCGATATTCCTTCGATAC
TGGCACGACTTGGAAAGATGAAGAGTTGGTTACATGTGACAACCTCATCA
CAAGGACAAGTTCTTCTCGTTTGTGAACCTGCTGAAGATTTTGAGCTCAT
TGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATC
TGGTTAAATTGAAGATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTA
CCTTCAGAGGATTTCTTTTATGGTTATTGCAACAAAGTGAAATATTTTTG
TACATGGAACATTCAAACCTTACGATTGGATTATATCGAAGAGTCGCTCT
TCAACGAGAAACTACTTGACTTGAATACACAAGCAGTAACAGGGTTAGAT
GATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGATGTCCCAACGCT
AGGGTAGCAATGAAATCCAATTGTCGATATTCCTTCGATACTGGCACGAC
TTGGAAAGATGAAGAGTTGGTTACATGTGACAACCTCATCACAAGGACAA
GTTCTTCTCGTTTGTGAACCTGCTGAAGATTTTGAGCTCATTGGGCATAC
ACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAAAT
TGAAGATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAG
GATTTCTTTTATGGTTATTGCAACAAAGTGAAATATTTTTGTACATGGAA
CATTCAAACCTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGA
AACTACTTGACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGACT
TTAGTCCCACAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTAGCA
ATGAAATCCAATTGTCGATATTCCTTCGATACTGGCACGACTTGGAAAGA
TGAAGAGTTGGTTACATGTGACAACCTCATCACAAGGACAAGTTCTTCTC
GTTTGTGAACCTGCTGAAGATTTTGAGCTCATTGGGCATACACAAACAAA
ACGGTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAAATTGAAGATCA
CACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAGGATTTCTTT
TATGGTTATTGCAACAAAGTGAAATATTTTTGTACATGGAACATTCAAAC
CTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGAAACTACTTG
ACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGACTTTAGTCCCA
CAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTAGCAATGAAATCC
AATTGTCGATATTCCTTCGATACTGGCACGACTTGGAAAGATGAAGAGTT
GGTTACATGTGACAACCTCATCACAAGGACAAGTTCTTCTCGTTTGTGAA
CCTGCTGAAGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014326XLOC_014326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025517-exon-sc0000538-1575043694:204592..204615TCONS_00025517-exon-sc0000538-1575043694:204592..204615Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:204361..204413TCONS_00025517-exon-sc0000538-1575043694:204361..204413Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:203649..203891TCONS_00025517-exon-sc0000538-1575043694:203649..203891Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:203160..203274TCONS_00025517-exon-sc0000538-1575043694:203160..203274Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:202858..202960TCONS_00025517-exon-sc0000538-1575043694:202858..202960Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:202642..202694TCONS_00025517-exon-sc0000538-1575043694:202642..202694Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:201925..202167TCONS_00025517-exon-sc0000538-1575043694:201925..202167Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1575043694:200867..201559TCONS_00025517-exon-sc0000538-1575043694:200867..201559Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:204592..204615TCONS_00025517-exon-sc0000538-1510915933:204592..204615Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:204361..204413TCONS_00025517-exon-sc0000538-1510915933:204361..204413Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:203649..203891TCONS_00025517-exon-sc0000538-1510915933:203649..203891Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:203160..203274TCONS_00025517-exon-sc0000538-1510915933:203160..203274Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:202858..202960TCONS_00025517-exon-sc0000538-1510915933:202858..202960Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:202642..202694TCONS_00025517-exon-sc0000538-1510915933:202642..202694Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:201925..202167TCONS_00025517-exon-sc0000538-1510915933:201925..202167Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1510915933:200867..201559TCONS_00025517-exon-sc0000538-1510915933:200867..201559Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:204592..204615TCONS_00025517-exon-sc0000538-1491911889:204592..204615Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:204361..204413TCONS_00025517-exon-sc0000538-1491911889:204361..204413Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:203649..203891TCONS_00025517-exon-sc0000538-1491911889:203649..203891Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:203160..203274TCONS_00025517-exon-sc0000538-1491911889:203160..203274Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:202858..202960TCONS_00025517-exon-sc0000538-1491911889:202858..202960Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:202642..202694TCONS_00025517-exon-sc0000538-1491911889:202642..202694Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:201925..202167TCONS_00025517-exon-sc0000538-1491911889:201925..202167Clytia hemisphaericaexon
TCONS_00025517-exon-sc0000538-1491911889:200867..201559TCONS_00025517-exon-sc0000538-1491911889:200867..201559Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025517-proteinTCONS_00025517-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000538supercontigsc0000538:200867..204615 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.082436	0	0	0	0	0.32307	0.378883	0.09278	0.0923091	0	0.127	1.19154	0.414779	0	0.232958	0	0.0713946	0.0539582	0.0666498	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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