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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025546 ID=TCONS_00025546|Name=TCONS_00025546|organism=Clytia hemisphaerica|type=transcript|length=1867bp
CAATGTTCTCAAGGAAAACCAAGGACAGAGAAAGCAAGAGATCCGTAACA
AGTTCAATCGTATCACGAAAATCCAGTGCCAAGAGTGTCGGAAGTAATCG
AAGTAAAGGCACCAGTCGATCTTTTACAACCACTCGTAGTTACACTACCA
ACCGTAGCAATGGAACTGTTACATCCCAAAGCAGCTACATCAAGAAAAAT
TCCGGAAATTTTGACGGTAGTAATGATCGCTCTCGCCGAAAATCATCGTT
GCAACGAAAATCATCGGCTTCGAGCCGTAGAGAACAACTCATAGCAGATT
TTTATCGAGATTTGGAAGAACTAGACGAGGAACGAAGTTGTTCCGACTCT
TccgatgatgaaaatgatagcCGCGGAAACGGAAGTCGGaatcgaaataa
aaagaaattaaagaaaggACGAATAGAAGTAGAGGAAGTCAAAAGTCATC
AACGTGTCCAAGAATATTTGATGAAACTCGAACATACAGAACCCCCGGAA
ATTTTTGAGGAGGACGAGGGAATTCGTTCGGATATGTCAGACGGTAGATT
AGGCTCGTCTTATAATAGTAACTACAGTAACGATATCCCTATGGAAACTA
ATAAAAATGATAACAATAATGGCGGACGTAAAAGTGAACCGAGATACATA
AAACGACCGAACCCTCCCGATAATATGATCGCTGATTTGGAAGATTCACC
GAGAACGCACCGACTTAAAGTTCGGGACGAATACCGAAAATCGCGAAACG
ATAAACAAGACTCTAATAAATATGACGTCAATAAAAATAACGTCGGAAAG
AAAACTCGTTCTGCAAATTACACGCCTCGAGTGTTACCCCAACATCCAAA
AGAAATCGAACTGATTGATAAAAATTTACGTGAAAGTTTTAATAATAAAC
GAAAACCGAGTAATAACGACTATAAACGAGTTTCGGTTCACGAAGACTTA
TATATGAACGATAGTGGTAGCGAATCATCCTGTTCAACAGATTCGGCACA
CGGTTCAACTCACTCCATCTCTACCGTTAGTTCCATCTCAGTAGCAcaga
aacaccaaaacaaacaaattcatCAGTTAAGTTTTAAAACAACGGTACCC
AAAAATTTTATACCAggacaacaacaaaaacatatACTGGACTCACAACG
TAAAAAGACAAATCGAAAACcgaaaaaagtttcattttgttTCAGAGGTA
TTCCTTTCAGAGTTTACAATAATACACCGAGAACTCATAGGGCGTTAGCT
CACGCAGGGTGTATTGCCCTCATTATTCCCGCCCCTGGTAATCACAAATG
TAGACATTAACTTTTCGctatacacgtctttttttttaaagaaactagtt
ttaccaagcagcctcaatgtttcttaagaaatcggccttttgagctttaa
atgtttcttacatgtttctaaactttttgacataattagccttggaaggt
tcttataaaaaaacgaattaaaaaatgttattttctcattctcagcctca
gcatgtttcttagatatttcttagtttttaggcattctgagcctcatgtt
tcttaaaagtgtgtttcttaaaaaaaaaaagacgtgtagaAGAGTATTGT
TTAAATCATATGATGTTGCAATGTTGAACCAAAGAACATGGGCTTCCTAG
CTCGGACATTATATTTGTACTGGACTGGtttaaattattcaaaatagtat
tttttttaagttttgtgaATCTTAATTAAAACGCACTTTTAGTTCtgttc
aataaaaaaacttctttttttaagaaaatgaagacaCAAAAATGACCTAA
AAAGAGTCCTACTATTGCCTTCTTCAAAAAGAGTTTTCTCTAGAGTTCAG
GCCTAGAATACACGCAT Run BLAST on NCBI transcript from alignment at sc0000539:85819..88323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025546 ID=TCONS_00025546|Name=TCONS_00025546|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at sc0000539:85819..88323+ (Clytia hemisphaerica)
CAATGTTCTCAAGGAAAACCAAGGACAGAGAAAGCAAGAGTAAgcaagaa
tatttttttatcacaAACTCAAACTTACAGTATCTGACATGTTTGGGAGC
TCCTTCAGATTGAAGTGTTCTTTTAGAAGAAACACTAAACAAATGTTGAG
ATTTGAATCAACTTGATCTAAATTTTAGCTTACTTTAATAATTGTATACC
TTGATCTGCCTAGCTGCTAGGGTTCAATGCTTGCTCTATTGAGTACGAAA
GATGCATCCTGTTGCTATTTATGTTGCCTATAATAAAAGTTTGCTTCTAC
TAAGCCTTTATAACTATCCAAAATGTCTTGCAAAAATTGggggaatttaa
aaaaaaatttatttactttttcaagTATTCCACCAGATGACCCATCCGTA
TGCGTTGTAGTTAGGGGGTCGAAGAAAGCGTAATGTCTATCTTATACGTT
TAtcatataaaaacatccaaaattttttaaacctcttcaattttgagttt
taaacctaaaaatgttcttaacatgttcttattttcataatttttagagt
atatttttccattttcctaagaaattgggtgatGTAGATTCTGCAAAGga
ttaaaaaattatgtttttaacttgttcttataaagtttattcttataaaa
aacgtgtatttctcTTTCTCTCTACAGGATCCGTAACAAGTTCAATCGTA
TCACGAAAATCCAGTGCCAAGAGTGTCGGAAGTAATCGAAGTAAAGGCAC
CAGTCGATCTTTTACAACCACTCGTAGTTACACTACCAACCGTAGCAATG
GAACTGTTACATCCCAAAGCAGCTACATCAAGAAAAATTCCGGAAATTTT
GACGGTAGTAATGATCGCTCTCGCCGAAAATCATCGTTGCAACGAAAATC
ATCGGCTTCGAGCCGTAGAGAACAACTCATAGCAGATTTTTATCGAGATT
TGGAAGAACTAGACGAGGAACGAAGTTGTTCCGACTCTTccgatgatgaa
aatgatagcCGCGGAAACGGAAGTCGGaatcgaaataaaaagaaattaaa
gaaaggACGAATAGAAGTAGAGGAAGTCAAAAGTCATCAACGTGTCCAAG
AATATTTGATGAAACTCGAACATACAGAACCCCCGGAAATTTTTGAGGAG
GACGAGGGAATTCGTTCGGATATGTCAGACGGTAGATTAGGCTCGTCTTA
TAATAGTAACTACAGTAACGATATCCCTATGGAAACTAATAAAAATGATA
ACAATAATGGCGGACGTAAAAGTGAACCGAGATACATAAAACGACCGAAC
CCTCCCGATAATATGATCGCTGATTTGGAAGATTCACCGAGAACGCACCG
ACTTAAAGTTCGGGACGAATACCGAAAATCGCGAAACGATAAACAAGACT
CTAATAAATATGACGTCAATAAAAATAACGTCGGAAAGAAAACTCGTTCT
GCAAATTACACGCCTCGAGTGTTACCCCAACATCCAAAAGAAATCGAACT
GATTGATAAAAATTTACGTGAAAGTTTTAATAATAAACGAAAACCGAGTA
ATAACGACTATAAACGAGTTTCGGTTCACGAAGACTTATATATGAACGAT
AGTGGTAGCGAATCATCCTGTTCAACAGATTCGGCACACGGTTCAACTCA
CTCCATCTCTACCGTTAGTTCCATCTCAGTAGCAcagaaacaccaaaaca
aacaaattcatCAGTTAAGTTTTAAAACAACGGTACCCAAAAATTTTATA
CCAggacaacaacaaaaacatatACTGGACTCACAACGTAAAAAGACAAA
TCGAAAACcgaaaaaagtttcattttgttTCAGAGGTATTCCTTTCAGAG
TTTACAATAATACACCGAGAACTCATAGGGCGTTAGCTCACGCAGGGTGT
ATTGCCCTCATTATTCCCGCCCCTGGTAATCACAAATGTAGACATTAACT
TTTCGctatacacgtctttttttttaaagaaactagttttaccaagcagc
ctcaatgtttcttaagaaatcggccttttgagctttaaatgtttcttaca
tgtttctaaactttttgacataattagccttggaaggttcttataaaaaa
acgaattaaaaaatgttattttctcattctcagcctcagcatgtttctta
gatatttcttagtttttaggcattctgagcctcatgtttcttaaaagtgt
gtttcttaaaaaaaaaaagacgtgtagaAGAGTATTGTTTAAATCATATG
ATGTTGCAATGTTGAACCAAAGAACATGGGCTTCCTAGCTCGGACATTAT
ATTTGTACTGGACTGGtttaaattattcaaaatagtattttttttaagtt
ttgtgaATCTTAATTAAAACGCACTTTTAGTTCtgttcaataaaaaaact
tctttttttaagaaaatgaagacaCAAAAATGACCTAAAAAGAGTCCTAC
TATTGCCTTCTTCAAAAAGAGTTTTCTCTAGAGTTCAGGCCTAGAATACA
CGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025546-exon-sc0000539-1491911889:85819..85857 | TCONS_00025546-exon-sc0000539-1491911889:85819..85857 | Clytia hemisphaerica | exon |
| TCONS_00025546-exon-sc0000539-1510915933:85819..85857 | TCONS_00025546-exon-sc0000539-1510915933:85819..85857 | Clytia hemisphaerica | exon |
| TCONS_00025546-exon-sc0000539-1575043694:85819..85857 | TCONS_00025546-exon-sc0000539-1575043694:85819..85857 | Clytia hemisphaerica | exon |
| TCONS_00025546-exon-sc0000539-1491911889:86496..88323 | TCONS_00025546-exon-sc0000539-1491911889:86496..88323 | Clytia hemisphaerica | exon |
| TCONS_00025546-exon-sc0000539-1510915933:86496..88323 | TCONS_00025546-exon-sc0000539-1510915933:86496..88323 | Clytia hemisphaerica | exon |
| TCONS_00025546-exon-sc0000539-1575043694:86496..88323 | TCONS_00025546-exon-sc0000539-1575043694:86496..88323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000539 | supercontig | sc0000539:85819..88323 + |
Blast
The following BLAST results are available for this feature:
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