TCONS_00025580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025580
Unique NameTCONS_00025580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025580 ID=TCONS_00025580|Name=TCONS_00025580|organism=Clytia hemisphaerica|type=transcript|length=2404bp
TACAAAAGTGAAAACGCAGAGAAGGAGGGTTTGTTTACATTCAAAGAAGA
CATTACGAAATGGACTGGGTACAAATTTCCCAAGATGCTTtggaaatatt
tgtttttaatggactcacttactaaaataatttcCAATACTAAGAAGTTC
AGATAGCCATAGATGCGTTAACCCACGGATAGCACTATTTTGTAGAATTT
CTGGTGTGACTGAACGCATTCTTGTCTGCACCAGAGACAGAGAAAGACTG
AGACGTTTTACCCAAGTAAAGAACACCACAAATCTCACTTTCGTATTcca
aagtatgattgataaccGAGCAACAAAAAGAAGACTCTCTGATGCTGACA
AAAATGAAAGAATAGCGATGAGACAAATGGTCTTGAATATGTCTATGTGT
AAACTACAAAAACGACATGGCAGAAAGGAACCATCATTACGTAGGACTGT
AATAATTAACAACACAGTTCAGCAAATTGAACGAGAAATGGACAATGAAA
TGCTTGCTGAAGAATATGAAATGAAACATCAACAATATAAAGAAATGCAC
ATGCATGTTGATGATTATTTTTCACCAACTTCATACACGATAGAACAAAC
AACACAATCTTTAGACGCACAAGTTACAACATTCACATTTGACGACACAT
CAAAGTTTGATGaggataaaaaagaaaacaaatttggAGCTATTGGCGAC
CACAGGAAAATTATCCCATCTACAGACTGCTTTTCAAACAGACCTTCTGG
CTATGTGTCTGGTTTCATGTGGGATAGTTTAACTTTACCGACCCTAACAG
CACAAAATTCAAATCCTAACCCTATCCTAGAATCTGTTGAAGTTGGTAGT
AATTTTACAGACGTTGATATATCTctttatgattttgataattCGTTTCA
ATCCTTCCAAGCAAAGGAATGGCAACCCTATCCACGAAGCTGTGCTTCCG
AGTATAACCGTTGTCAACCTGATTCATTTTTCCAAGAGCTTGATCAAATC
ATGCAAGTCCTGGTTGGGGTatagtttttatcaaatttattttaaactaG
ATTTATTCTCTAGCTAGTCaataaccaagcaaaaaaaaaaagatttgata
gGTATTCAATGCCTTTCTATTGATGTAAACAAAAGTTTCTCTATCACGAA
TTTAGTGATGTGGAGAGGGGCAGAGCTTCCAATAAACCTGCATGATGAAA
AGGCTCAACaaattttattgtttgtttATTCTCTTTTGTTTTGACTGCAT
GCTGTGCAATGTAGTGAACACATTATCTTCTGACAGTTTTTCTgaatatt
aattaaaatattGAAGTTATTTGtaacatattttcaaaattgacattttc
atGTGTAGAAAGCTTATATACAAAATTAAAACTGTATTTTAAGGTATTCA
ATTTGAAAGAATCAGGCATATTTTTTTGCCTTTTAATTtgtttatatata
aaaaattcttttgagtTTTCAAGATATTGTATTATTGTTTatcattaaat
ttctttttttttgtattttataaaGAAACTTAGAATATATCTATTCatta
tatttaaaaacaaaaaaataaaaattaagatTGATAGAATTTATATTGTT
TTAGTTTGTATcatagttatttttcaaaaaaagtcttTAGAGttaatatt
attttattatagTTTTTTTCATTATTACGCATATTTCAATTTATAACTAG
TGTTGCCTTTGTTTATTTTCCACACTGTTGGTGGCAAGATCTAGTATCTT
TCATTGTTGAAACTTGAGCTTTTGGAGAGAAATTCGATCTGAGAATGGAT
ACCCGAGCTAATGTTTTCTTTGGACAATTTCTGAAGTGTTTACTAAAGAC
TTTTTTTCATGTTGCAAACATGCAAACTCATGTGACGTTAGCGTTGCTAT
AGCAGTGTTGcttataaagtaaataaatATAATTTCCTGATTAATCAAGA
TTTTGATGACACAGTCATCCTGTATTTTTGAAATGGACTTTATCTTTTGG
AAGGATTCTGGAAATGTCTTAGAAAGGAAACTTAAACATTTGAGTAggtt
tttgttagttttttatttaaaattattataaagTACATACGGAACGAAGG
TTAAAACAATTTGAATTATAATTTgcaaaactcatttttgtagatatata
ttgtaattttaatatttttataatgaaTTCAGCCACATTAACATTATTAA
TGATATTCTTATATATAAGTTTTTAGAAAGGTTTCAAATTAGTGAAAAAC
GTTgtgttttgtctctttttgtaaTAGACGAAAAAGGGTTATACATATAT
TATGTAGTATAAATTATGTTAGTTGCTTTGTTGTATCTAACTTTTGTGGA
AATATATTTGTGatatttcaaaagaaagaaaagaaaaatcaagtattgaa
aata
Run BLAST on NCBI

protein sequence of TCONS_00025580-protein

>TCONS_00025580-protein ID=TCONS_00025580-protein|Name=TCONS_00025580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MIDNRATKRRLSDADKNERIAMRQMVLNMSMCKLQKRHGRKEPSLRRTVI
INNTVQQIEREMDNEMLAEEYEMKHQQYKEMHMHVDDYFSPTSYTIEQTT
QSLDAQVTTFTFDDTSKFDEDKKENKFGAIGDHRKIIPSTDCFSNRPSGY
VSGFMWDSLTLPTLTAQNSNPNPILESVEVGSNFTDVDISLYDFDNSFQS
FQAKEWQPYPRSCASEYNRCQPDSFFQELDQIMQVLVGV
Run BLAST on NCBI

transcript from alignment at sc0000539:214213..216862-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025580 ID=TCONS_00025580|Name=TCONS_00025580|organism=Clytia hemisphaerica|type=transcript|length=2650bp|location=Sequence derived from alignment at sc0000539:214213..216862- (Clytia hemisphaerica)
TACAAAAGTGAAAACGCAGAGAAGGAGGGTTTGTTTACATTCAAAGAAGA
CATTACGAAATGGACTGGGTACAAATTTCCCAAGATGCTTTGGAAATATT
TGTTTTTAATGGACTCACTTACTAAAATAATTTCCAATACTAAGAAGTTC
AGATAGCCATAGATGCGTTAACCCACGGATAGCACTATTTTGTAGAATTT
CTGGTGTGACTGAACGCATTCTTGTCTGCACCAGAGACAGAGAAAGACTG
AGACGTTTTACCCAAGTAAAGAACACCACAAATCTCACTTTCGTAAGTGG
TTTGATCCTCCTAGCTCTCTCTTGTTTGTCATTGCAAATACCAGATAATT
TTTCCCATTGCTGTTTTGAAAATTCTTAGAAGGTGATAAATACCAACCTT
TTTATCATCACTTGACGACTGTTACTGTTACTGAAGCGTCGTAGCTTTCG
AAGTGTTCTTTATCTTTATCTTTATCACATGATATATGCAGACTTCATAC
TTCAATTATAAGAATATCTTTTGTTGTTACTTTCACAGGTATTCCAAAGT
ATGATTGATAACCGAGCAACAAAAAGAAGACTCTCTGATGCTGACAAAAA
TGAAAGAATAGCGATGAGACAAATGGTCTTGAATATGTCTATGTGTAAAC
TACAAAAACGACATGGCAGAAAGGAACCATCATTACGTAGGACTGTAATA
ATTAACAACACAGTTCAGCAAATTGAACGAGAAATGGACAATGAAATGCT
TGCTGAAGAATATGAAATGAAACATCAACAATATAAAGAAATGCACATGC
ATGTTGATGATTATTTTTCACCAACTTCATACACGATAGAACAAACAACA
CAATCTTTAGACGCACAAGTTACAACATTCACATTTGACGACACATCAAA
GTTTGATGAGGATAAAAAAGAAAACAAATTTGGAGCTATTGGCGACCACA
GGAAAATTATCCCATCTACAGACTGCTTTTCAAACAGACCTTCTGGCTAT
GTGTCTGGTTTCATGTGGGATAGTTTAACTTTACCGACCCTAACAGCACA
AAATTCAAATCCTAACCCTATCCTAGAATCTGTTGAAGTTGGTAGTAATT
TTACAGACGTTGATATATCTCTTTATGATTTTGATAATTCGTTTCAATCC
TTCCAAGCAAAGGAATGGCAACCCTATCCACGAAGCTGTGCTTCCGAGTA
TAACCGTTGTCAACCTGATTCATTTTTCCAAGAGCTTGATCAAATCATGC
AAGTCCTGGTTGGGGTATAGTTTTTATCAAATTTATTTTAAACTAGATTT
ATTCTCTAGCTAGTCAATAACCAAGCAAAAAAAAAAAGATTTGATAGGTA
TTCAATGCCTTTCTATTGATGTAAACAAAAGTTTCTCTATCACGAATTTA
GTGATGTGGAGAGGGGCAGAGCTTCCAATAAACCTGCATGATGAAAAGGC
TCAACAAATTTTATTGTTTGTTTATTCTCTTTTGTTTTGACTGCATGCTG
TGCAATGTAGTGAACACATTATCTTCTGACAGTTTTTCTGAATATTAATT
AAAATATTGAAGTTATTTGTAACATATTTTCAAAATTGACATTTTCATGT
GTAGAAAGCTTATATACAAAATTAAAACTGTATTTTAAGGTATTCAATTT
GAAAGAATCAGGCATATTTTTTTGCCTTTTAATTTGTTTATATATAAAAA
ATTCTTTTGAGTTTTCAAGATATTGTATTATTGTTTATCATTAAATTTCT
TTTTTTTTGTATTTTATAAAGAAACTTAGAATATATCTATTCATTATATT
TAAAAACAAAAAAATAAAAATTAAGATTGATAGAATTTATATTGTTTTAG
TTTGTATCATAGTTATTTTTCAAAAAAAGTCTTTAGAGTTAATATTATTT
TATTATAGTTTTTTTCATTATTACGCATATTTCAATTTATAACTAGTGTT
GCCTTTGTTTATTTTCCACACTGTTGGTGGCAAGATCTAGTATCTTTCAT
TGTTGAAACTTGAGCTTTTGGAGAGAAATTCGATCTGAGAATGGATACCC
GAGCTAATGTTTTCTTTGGACAATTTCTGAAGTGTTTACTAAAGACTTTT
TTTCATGTTGCAAACATGCAAACTCATGTGACGTTAGCGTTGCTATAGCA
GTGTTGCTTATAAAGTAAATAAATATAATTTCCTGATTAATCAAGATTTT
GATGACACAGTCATCCTGTATTTTTGAAATGGACTTTATCTTTTGGAAGG
ATTCTGGAAATGTCTTAGAAAGGAAACTTAAACATTTGAGTAGGTTTTTG
TTAGTTTTTTATTTAAAATTATTATAAAGTACATACGGAACGAAGGTTAA
AACAATTTGAATTATAATTTGCAAAACTCATTTTTGTAGATATATATTGT
AATTTTAATATTTTTATAATGAATTCAGCCACATTAACATTATTAATGAT
ATTCTTATATATAAGTTTTTAGAAAGGTTTCAAATTAGTGAAAAACGTTG
TGTTTTGTCTCTTTTTGTAATAGACGAAAAAGGGTTATACATATATTATG
TAGTATAAATTATGTTAGTTGCTTTGTTGTATCTAACTTTTGTGGAAATA
TATTTGTGATATTTCAAAAGAAAGAAAAGAAAAATCAAGTATTGAAAATA

Coding sequence (CDS) from alignment at sc0000539:214213..216862-

>TCONS_00025580 ID=TCONS_00025580|Name=TCONS_00025580|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000539:214213..216862- (Clytia hemisphaerica)
ATGATTGATAACCGAGCAACAAAAAGAAGACTCTCTGATGCTGACAAAAA
TGAAAGAATAGCGATGAGACAAATGGTCTTGAATATGTCTATGTGTAAAC
TACAAAAACGACATGGCAGAAAGGAACCATCATTACGTAGGACTGTAATA
ATTAACAACACAGTTCAGCAAATTGAACGAGAAATGGACAATGAAATGCT
TGCTGAAGAATATGAAATGAAACATCAACAATATAAAGAAATGCACATGC
ATGTTGATGATTATTTTTCACCAACTTCATACACGATAGAACAAACAACA
CAATCTTTAGACGCACAAGTTACAACATTCACATTTGACGACACATCAAA
GTTTGATGAGGATAAAAAAGAAAACAAATTTGGAGCTATTGGCGACCACA
GGAAAATTATCCCATCTACAGACTGCTTTTCAAACAGACCTTCTGGCTAT
GTGTCTGGTTTCATGTGGGATAGTTTAACTTTACCGACCCTAACAGCACA
AAATTCAAATCCTAACCCTATCCTAGAATCTGTTGAAGTTGGTAGTAATT
TTACAGACGTTGATATATCTCTTTATGATTTTGATAATTCGTTTCAATCC
TTCCAAGCAAAGGAATGGCAACCCTATCCACGAAGCTGTGCTTCCGAGTA
TAACCGTTGTCAACCTGATTCATTTTTCCAAGAGCTTGATCAAATCATGC
AAGTCCTGGTTGGGGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014353XLOC_014353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025580-proteinTCONS_00025580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025580-exon-sc0000539-1575043694:216571..216862TCONS_00025580-exon-sc0000539-1575043694:216571..216862Clytia hemisphaericaexon
TCONS_00025580-exon-sc0000539-1575043694:214213..216324TCONS_00025580-exon-sc0000539-1575043694:214213..216324Clytia hemisphaericaexon
TCONS_00025580-exon-sc0000539-1510915933:216571..216862TCONS_00025580-exon-sc0000539-1510915933:216571..216862Clytia hemisphaericaexon
TCONS_00025580-exon-sc0000539-1510915933:214213..216324TCONS_00025580-exon-sc0000539-1510915933:214213..216324Clytia hemisphaericaexon
TCONS_00025580-exon-sc0000539-1491911889:216571..216862TCONS_00025580-exon-sc0000539-1491911889:216571..216862Clytia hemisphaericaexon
TCONS_00025580-exon-sc0000539-1491911889:214213..216324TCONS_00025580-exon-sc0000539-1491911889:214213..216324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000539supercontigsc0000539:214213..216862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.00842	4.08222	1.51895	1.80833	69.684	51.4654	55.649	59.1208	46.2816	55.4882	43.5255	58.1819	66.0449	58.1393	89.1722	78.8631	41.5208	50.0815	58.2972	59.6554	37.7086	32.9061	25.9821	28.457	35.6614	38.0375	131.402	104.332	74.4854	70.8442
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009263SERTA_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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