TCONS_00025604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025604
Unique NameTCONS_00025604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025604 ID=TCONS_00025604|Name=TCONS_00025604|organism=Clytia hemisphaerica|type=transcript|length=598bp
GAATGATGGtaaaacttttcgaaaaacatCTCGTTACTGCACTTAAATCA
ATGTTACCAAAAATGTTGTTATCGTTATCGGTTATTATTAAGAAATGTTT
TGACGTAAATTATTACAAAAGATAAATTATTACAAATCGAAAAAGACATA
ACTATCAAAACATAGAAATACCCGTTAAATTAGCTAGATACATATACatt
gtaagggtgtgtttggggactgctgaattgcagagtctgacagtaaaaat
cagATGTGCCTTTATGGTTTTGACTTgcatctttttttcttttacatcAA
TTGAAAGCTGAATAACACGCACAGCTTAAAATACAGCAGCTGTCCTCCAA
CAAATTTTTCCACGTGCAATTTCAGGTTATACAGACTCCACTGTTATTGT
AATTAAGTGTACGTACGGAAAATATTACAgatttgtttgttatttttact
GTTCTATTGTATTACAAGAGATATTCTGATCAATGCGATAGTGAGTTTAT
GCATTCTCACCTTTGAAgactgaaacgatttggaaaaactctGCCCAAAA
AACTTTTCTGACCCACAAAATCGAGGACAGTAAAAGTTCTAATTTANG
Run BLAST on NCBI

transcript from alignment at sc0000540:138683..139356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025604 ID=TCONS_00025604|Name=TCONS_00025604|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at sc0000540:138683..139356- (Clytia hemisphaerica)
GAATGATGGTAAAACTTTTCGAAAAACATCTCGTTACTGCACTTAAATCA
ATGTTACCAAAAATGTTGTTATCGTTATCGGTTATTATTAAGAAATGTTT
TGACGTAAATTATTACAAAAGATAAATTATTACAAATCGAAAAAGACATA
ACTATCAAAACATAGAAATACCCGTTAAATTAGCTAGATACATATACATT
GTAAGAGTGTGTNCTTAAAAGACATAACTATCAAAACATAAAAATATACG
TTAAATTAGCTAGATACATATACATTGTAAGGGTGTGTTTGGGGACTGCT
GAATTGCAGAGTCTGACAGTAAAAATCAGATGTGCCTTTATGGTTTTGAC
TTGCATCTTTTTTTCTTTTACATCAATTGAAAGCTGAATAACACGCACAG
CTTAAAATACAGCAGCTGTCCTCCAACAAATTTTTCCACGTGCAATTTCA
GGTTATACAGACTCCACTGTTATTGTAATTAAGTGTACGTACGGAAAATA
TTACAGATTTGTTTGTTATTTTTACTGTTCTATTGTATTACAAGAGATAT
TCTGATCAATGCGATAGTGAGTTTATGCATTCTCACCTTTGAAGACTGAA
ACGATTTGGAAAAACTCTGCCCAAAAAACTTTTCTGACCCACAAAATCGA
GGACAGTAAAAGTTCTAATTTANG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014368XLOC_014368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025604-exon-sc0000540-1575043694:139160..139356TCONS_00025604-exon-sc0000540-1575043694:139160..139356Clytia hemisphaericaexon
TCONS_00025604-exon-sc0000540-1575043694:138683..139083TCONS_00025604-exon-sc0000540-1575043694:138683..139083Clytia hemisphaericaexon
TCONS_00025604-exon-sc0000540-1510915933:139160..139356TCONS_00025604-exon-sc0000540-1510915933:139160..139356Clytia hemisphaericaexon
TCONS_00025604-exon-sc0000540-1510915933:138683..139083TCONS_00025604-exon-sc0000540-1510915933:138683..139083Clytia hemisphaericaexon
TCONS_00025604-exon-sc0000540-1491911889:139160..139356TCONS_00025604-exon-sc0000540-1491911889:139160..139356Clytia hemisphaericaexon
TCONS_00025604-exon-sc0000540-1491911889:138683..139083TCONS_00025604-exon-sc0000540-1491911889:138683..139083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:138683..139356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.20817	0	2.07943	2.82452	1.3509	1.15223	0.83036	0.742578	0.340193	0.223773	0.240408	0.26839	0	0.178924	0.757411	1.44969	2.68504	3.83044	0.584636	1.64867	0.426918	1.22119	11.3364	8.04633	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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