TCONS_00025605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025605
Unique NameTCONS_00025605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025605 ID=TCONS_00025605|Name=TCONS_00025605|organism=Clytia hemisphaerica|type=transcript|length=359bp
tttcctgttttgaactcatctttgattttgCTACGGGCCTCGtctctttt
cttttcattttcggTTCTCTCAAGTTTTCCATCGGCTCCTCTGGGTTTTT
CACCATGTCTTGGAGGAGGTTTTCCACCTTTCCCTGGTGGGGGTTTTCCA
CCTTCTCTTGGAGGAGTTTTTCCACCTTCTCTTGGAGGAGGTTTTCCACC
AGGTCCACCGGGTTTTCCACCAGGTCCACCGGGTTTTCCACCTTCTCTTT
GAGGGGGTTTTCCACCTTGTTCCTTAGCGTTTGTTATATGAGCTGTCAAG
ATGACCAGTACTGTCATCAATATTATAAAAGCTAATCTCATTCTGTCTTT
CGTTTTTga
Run BLAST on NCBI

transcript from alignment at sc0000540:166902..167433-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025605 ID=TCONS_00025605|Name=TCONS_00025605|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000540:166902..167433- (Clytia hemisphaerica)
TTTCCTGTTTTGAACTCATCTTTGATTTTGCTACGGGCCTCGTCTCTTTT
CTTTTCATTTTCGGTTCTCTCAAGTTTTCCATCGGCTCCTCTGGGTTTTT
CACCATGTCTTGGAGGAGGTTTTCCACCTTTCCCTGGTGGGGGTTTTCCA
CCTTCTCTTGGAGGAGGTTTTCCACCAGGTCCACCGGGTTTTCCACCTTC
TCTTGGAAGGGGTTTTCCACCTTCTTTTGTAGGAGTTTTTCCACCTTCTC
TTGGAGGAGGTTTTCCACCAGGTCCACCGGGTTTTCCACCTTCTCTTTGA
GGGGGTTTTCCNGTTTTCCACCTTCTCTTGGAAGGGGTTTTCCACCTTCT
TTTGTAGGAGTTTTTCCACCTTCTCTTGGAGGAGGTTTTCCACCAGGTCC
ACCGGGTTTTCCACCTTCTCTTTGAGGGGGTTTTCCACCTTGTTCCTTAG
CGTTTGTTATATGAGCTGTCAAGATGACCAGTACTGTCATCAATATTATA
AAAGCTAATCTCATTCTGTCTTTCGTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014369XLOC_014369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025605-exon-sc0000540-1575043694:167268..167433TCONS_00025605-exon-sc0000540-1575043694:167268..167433Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1575043694:167154..167198TCONS_00025605-exon-sc0000540-1575043694:167154..167198Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1575043694:166902..167049TCONS_00025605-exon-sc0000540-1575043694:166902..167049Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1510915933:167268..167433TCONS_00025605-exon-sc0000540-1510915933:167268..167433Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1510915933:167154..167198TCONS_00025605-exon-sc0000540-1510915933:167154..167198Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1510915933:166902..167049TCONS_00025605-exon-sc0000540-1510915933:166902..167049Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1491911889:167268..167433TCONS_00025605-exon-sc0000540-1491911889:167268..167433Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1491911889:167154..167198TCONS_00025605-exon-sc0000540-1491911889:167154..167198Clytia hemisphaericaexon
TCONS_00025605-exon-sc0000540-1491911889:166902..167049TCONS_00025605-exon-sc0000540-1491911889:166902..167049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:166902..167433 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.348829	0	0	2.59237	3.11658	4.19077	1.9884	0	0	0	0	0	0	0	0	1.06269	1.82766	0.809235	0.863788	0	0	0.324313	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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