TCONS_00025607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025607
Unique NameTCONS_00025607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025607 ID=TCONS_00025607|Name=TCONS_00025607|organism=Clytia hemisphaerica|type=transcript|length=388bp
GATAAATGGAAAGGATGGAAATgatggaaaaaatggaaaagatGGAAAAG
ACGGTGCAAAAAACTGGAAAGAATGCGCTTGGAATAAAATAAATGATAAT
AAAGACAATGGCGTAATCAAGGTAGGTTATAAAATAAGCGGGNGAAAAAC
TGGAAAGAATGCGCTTGGAAGAATTTAAATGATGGAAAAGACAATGGCGT
AATCAAGTCTTGCGCCTTCAAAAAGAAATCTCCCTCTACTTACTTGAAAG
TTGTTGTTTCTTCGGCTATGAGAATATACAACTGCAATAGCTGCTGTAAA
CGTTGGTTTGTCACTTTCGATGGACATGAATGTGCACCTGTGCCAATAGA
CGGTGTCGTTTATATGAATGCAGGTGCTGGAAGCCGAA
Run BLAST on NCBI

transcript from alignment at sc0000540:172000..172730-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025607 ID=TCONS_00025607|Name=TCONS_00025607|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0000540:172000..172730- (Clytia hemisphaerica)
GATAAATGGAAAGGATGGAAATGATGGAAAAAATGGAAAAGATGGAAAAG
ACGGTGCAAAAAACTGGAAAGAATGCGCTTGGAATAAAATAAATGATAAT
AAAGACAATGGCGTAATCAAGGTAGGTTATAAAATAAGCGGGNGAAAAAC
TGGAAAGAATGCGCTTGGAAGAATTTAAATGATGGAAAAGACAATGGCGT
AATCAAGGTAGGCTATAAAAATAGGAGCATAGGAGCATTAGATATCTAAT
ATGAAACACTAGATCGAGCTATTGCGTCCCTTGCTTGAACAAATTTCTGG
TCTACTATTGTCCACTTTTCGTAAAGATTGTTTTGCTTTAACTGCAGCAG
GCTTGGAAAAAAATGGATTAGCTCTCTATCTAAATCTAGTTATTATTGTA
AGATAGTTTTGGTCCTATCTACAATCATGGTTGAAATATATTGAGTATTC
CGGTTATGTTAACGTTTTTCAAGATTTAAAGATTAAATAATCGGTATCAT
TAACCATTTCTGTTATTGATTGAAGAAAACACAACCTCTCTTTTTTTTAG
TCTTGCGCCTTCAAAAAGAAATCTCCCTCTACTTACTTGAAAGTTGTTGT
TTCTTCGGCTATGAGAATATACAACTGCAATAGCTGCTGTAAACGTTGGT
TTGTCACTTTCGATGGACATGAATGTGCACCTGTGCCAATAGACGGTGTC
GTTTATATGAATGCAGGTGCTGGAAGCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014370XLOC_014370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025607-exon-sc0000540-1575043694:172524..172730TCONS_00025607-exon-sc0000540-1575043694:172524..172730Clytia hemisphaericaexon
TCONS_00025607-exon-sc0000540-1575043694:172000..172180TCONS_00025607-exon-sc0000540-1575043694:172000..172180Clytia hemisphaericaexon
TCONS_00025607-exon-sc0000540-1510915933:172524..172730TCONS_00025607-exon-sc0000540-1510915933:172524..172730Clytia hemisphaericaexon
TCONS_00025607-exon-sc0000540-1510915933:172000..172180TCONS_00025607-exon-sc0000540-1510915933:172000..172180Clytia hemisphaericaexon
TCONS_00025607-exon-sc0000540-1491911889:172524..172730TCONS_00025607-exon-sc0000540-1491911889:172524..172730Clytia hemisphaericaexon
TCONS_00025607-exon-sc0000540-1491911889:172000..172180TCONS_00025607-exon-sc0000540-1491911889:172000..172180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:172000..172730 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.386552	0	0	0.267283	0	0	0.940626	0	0.318034	0	0	55.5286	53.2865	0	0	0.355998	0.29346	140.104	157.911	0	0.817806	13.1031	9.55471	105.347	57.5344	29.6093	30.2257	0.219986	0.448262
Blast
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BLAST of TCONS_00025607 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.026e-18
Identity = 32/78 (41.03%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:  148 NWKECAWKNLNDGKDNGVIKSCAFKKKSPSTYLKVVVSSAMRIYNCNSCCKRWFVTFDGHECA-PVPIDGVVYMNAGA 378
            N+K+C+W +LN G D G I  C F K   ++ L+V+ S ++R+   N+CC+RW+ TF+G EC+ P+PI+ ++Y++ G+
Sbjct:  105 NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGS 182
The following BLAST results are available for this feature:
BLAST of TCONS_00025607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR14.026e-1841.03Collagen triple helix repeat-containing protein 1 ... [more]
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