TCONS_00025608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025608
Unique NameTCONS_00025608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025608 ID=TCONS_00025608|Name=TCONS_00025608|organism=Clytia hemisphaerica|type=transcript|length=469bp
TGCAAAGATGGACGTGACGGTCGGGATGGAAAAGATGGAAAGGACGGCAA
AGACGGCAAAGACGGAGTCTGTTTGTATAAAAAAAGCGTATTTGgaataa
aaggagaaaaaggaaaagatggCAAAGATGGAATAAACGGAAAGGATGGG
ACAAATGGAAAGGATGGGATAAATGGAAAGGATGGAAATgatggaaaaaa
tggaaaagatGGAAAAGACGGTGCAAAAAACTGGAAAGAATGCGCTTGGA
ATAAAATAAATGATAATAAAGACAATGGCGTAATCAAGTCTTGCGCCTTC
AAAAAGAAATCTCCCTCTACTTACTTGAAAGTTGTTGTTTCTTCGGCTAT
GAGAATATACAACTGCAATAGCTGCTGTAAACGTTGGTTTGTCACTTTCG
ATGGACATGAATGTGCACCTGTGCCAATAGACGGTGTCGTTTATATGAAT
GCAGGTGCTGGAAGCCGAA
Run BLAST on NCBI

protein sequence of TCONS_00025608-protein

>TCONS_00025608-protein ID=TCONS_00025608-protein|Name=TCONS_00025608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
CKDGRDGRDGKDGKDGKDGKDGVCLYKKSVFGIKGEKGKDGKDGINGKDG
TNGKDGINGKDGNDGKNGKDGKDGAKNWKECAWNKINDNKDNGVIKSCAF
KKKSPSTYLKVVVSSAMRIYNCNSCCKRWFVTFDGHECAPVPIDGVVYMN
AGAGSR
Run BLAST on NCBI

transcript from alignment at sc0000540:172000..172897-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025608 ID=TCONS_00025608|Name=TCONS_00025608|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0000540:172000..172897- (Clytia hemisphaerica)
TGCAAAGATGGACGTGACGGTCGGGATGGAAAAGATGGAAAGGACGGCAA
AGACGGCAAAGACGGAGTCTGTTTGTATAAAAAAAGCGTATTTGGAATAA
AAGGAGAAAAAGGAAAAGATGGCAAAGATGGAATAAACGGAAAGGATGGG
ACAAATGGAAAGGATGGGATAAATGGAAAGGATGGAAATGATGGAAAAAA
TGGAAAAGATGGAAAAGACGGTGCAAAAAACTGGAAAGAATGCGCTTGGA
ATAAAATAAATGATAATAAAGACAATGGCGTAATCAAGGTAGGTTATAAA
ATAAGCGGGNGAAAAACTGGAAAGAATGCGCTTGGAAGAATTTAAATGAT
GGAAAAGACAATGGCGTAATCAAGGTAGGCTATAAAAATAGGAGCATAGG
AGCATTAGATATCTAATATGAAACACTAGATCGAGCTATTGCGTCCCTTG
CTTGAACAAATTTCTGGTCTACTATTGTCCACTTTTCGTAAAGATTGTTT
TGCTTTAACTGCAGCAGGCTTGGAAAAAAATGGATTAGCTCTCTATCTAA
ATCTAGTTATTATTGTAAGATAGTTTTGGTCCTATCTACAATCATGGTTG
AAATATATTGAGTATTCCGGTTATGTTAACGTTTTTCAAGATTTAAAGAT
TAAATAATCGGTATCATTAACCATTTCTGTTATTGATTGAAGAAAACACA
ACCTCTCTTTTTTTTAGTCTTGCGCCTTCAAAAAGAAATCTCCCTCTACT
TACTTGAAAGTTGTTGTTTCTTCGGCTATGAGAATATACAACTGCAATAG
CTGCTGTAAACGTTGGTTTGTCACTTTCGATGGACATGAATGTGCACCTG
TGCCAATAGACGGTGTCGTTTATATGAATGCAGGTGCTGGAAGCCGAA

Coding sequence (CDS) from alignment at sc0000540:172000..172897-

>TCONS_00025608 ID=TCONS_00025608|Name=TCONS_00025608|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000540:172000..172897- (Clytia hemisphaerica)
TCTTGCGCCTTCAAAAAGAAATCTCCCTCTACTTACTTGAAAGTTGTTGT
TTCTTCGGCTATGAGAATATACAACTGCAATAGCTGCTGTAAACGTTGGT
TTGTCACTTTCGATGGACATGAATGTGCACCTGTGCCAATAGACGGTGTC
GTTTATATGAATGCAGGTGCTGGAAGCCGATGCAAAGATGGACGTGACGG
TCGGGATGGAAAAGATGGAAAGGACGGCAAAGACGGCAAAGACGGAGTCT
GTTTGTATAAAAAAAGCGTATTTGGAATAAAAGGAGAAAAAGGAAAAGAT
GGCAAAGATGGAATAAACGGAAAGGATGGGACAAATGGAAAGGATGGGAT
AAATGGAAAGGATGGAAATGATGGAAAAAATGGAAAAGATGGAAAAGACG
GTGCAAAAAACTGGAAAGAATGCGCTTGGAATAAAATAAATGATAATAAA
GACAATGGCGTAATCAAGTCTTGCGCCTTCAAAAAGAAATCTCCCTCTAC
TTACTTGAAAGTTGTTGTTTCTTCGGCTATGAGAATATACAACTGCAATA
GCTGCTGTAAACGTTGGTTTGTCACTTTCGATGGACATGAATGTGCACCT
GTGCCAATAGACGGTGTCGTTTATATGAATGCAGGTGCTGGAAGCCGATG
CAAAGATGGACGTGACGGTCGGGATGGAAAAGATGGAAAGGACGGCAAAG
ACGGCAAAGACGGAGTCTGTTTGTATAAAAAAAGCGTATTTGGAATAAAA
GGAGAAAAAGGAAAAGATGGCAAAGATGGAATAAACGGAAAGGATGGGAC
AAATGGAAAGGATGGGATAAATGGAAAGGATGGAAATGATGGAAAAAATG
GAAAAGATGGAAAAGACGGTGCAAAAAACTGGAAAGAATGCGCTTGGAAT
AAAATAAATGATAATAAAGACAATGGCGTAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014370XLOC_014370Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025608-proteinTCONS_00025608-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025608-exon-sc0000540-1575043694:172610..172897TCONS_00025608-exon-sc0000540-1575043694:172610..172897Clytia hemisphaericaexon
TCONS_00025608-exon-sc0000540-1575043694:172000..172180TCONS_00025608-exon-sc0000540-1575043694:172000..172180Clytia hemisphaericaexon
TCONS_00025608-exon-sc0000540-1510915933:172610..172897TCONS_00025608-exon-sc0000540-1510915933:172610..172897Clytia hemisphaericaexon
TCONS_00025608-exon-sc0000540-1510915933:172000..172180TCONS_00025608-exon-sc0000540-1510915933:172000..172180Clytia hemisphaericaexon
TCONS_00025608-exon-sc0000540-1491911889:172610..172897TCONS_00025608-exon-sc0000540-1491911889:172610..172897Clytia hemisphaericaexon
TCONS_00025608-exon-sc0000540-1491911889:172000..172180TCONS_00025608-exon-sc0000540-1491911889:172000..172180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:172000..172897 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.307253	0.337837	0.00182547	0	0	0.324588	24.2131	22.4287	0	0	0.20326	0.341534	55.9409	70.0904	1.85145	0.759533	25.8472	31.6593	69.7566	43.6237	5.45957	3.51346	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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