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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025609 ID=TCONS_00025609|Name=TCONS_00025609|organism=Clytia hemisphaerica|type=transcript|length=328bp
AGAGCCTTGCCAAATTGCCTGATCACTGTaaaaacatgGTCATTCGAAAT
TTACtacaattaaataaaaaaggatGATGAAAGAGTTTATCAAAGATGGT
CAGGAAGAGCTTGTGTTACCCGAGATAATACTGCTCCTGGTCAAGAAGAC
TTTATTCAAAGCCTATAAGATAGACGTTTCGTAACTAATGCTTCAATGGG
TCCTGTTCAAATAGTTTTATTTTGCTCTAGTAATTTAACCGTATTTTTAC
TAAATTTACACTTCTAGAACAGCCTTGTTCCTATCCACAGGTAGATTTTG
TAGTATTCTTGATCTCCAGCTATTGTCC Run BLAST on NCBI transcript from alignment at sc0000540:187230..188523- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025609 ID=TCONS_00025609|Name=TCONS_00025609|organism=Clytia hemisphaerica|type=transcript|length=1294bp|location=Sequence derived from alignment at sc0000540:187230..188523- (Clytia hemisphaerica)
AGAGCCTTGCCAAATTGCCTGATCACTGTGTAAGTAAAGCATATTAAAGA
CCCCTCGAATGTTTTTATATACTGTATATTTCTTATTTATTGGAATTTGA
GTATTTCTTGCTTGAAAAACAGCTTTTTTTCAGTTAGACCATGACTTTTA
CATGAAACTTGGATTGACCGAACTAAAACATTGATGATACTTGATATTAA
TGTATGGTCATTTCTCTTTTTATCATTTTAGAAAAACATGGTCATTCGAA
ATTTACTACAATTAAATAAAAAAGGATGATGAAAGAGTTTATCAAAGATG
GTCAGGAAGAGCTTGTGTTACCCGAGGTAATATATGCTTGGTATGGTATT
GATTGTGTTGGAGTGAAATACTCTTTTCTGCTTGATTGTAGAGGGAAGGT
TTTCCATTACATAAGTTTTTCCATAACCCTCGATCTAAGGGCGAACATCA
ACAATGTTTATTTACATTTTTGCTTCTTTTATTGAGCTTTTATCAAAGTT
AATTAAAAAAGGCAATTTAATTGACATTGGAGGCGTTATATTAGGCTTCA
CCCTGTATCTATGCCCCCCCCCAGTGGTTTGCGTGATTGCGTGAATGGGC
ATTTTCGGTTGCGTGAATGCGTGAAAATTGAAAAAAAGATGCGTGAATGC
GCGAAGGCGTGAATCTGGGCTATCTTGTGCGTGAATACGTGAATTTTCCC
TTTTTTCACCGATTATATGCAGTTTTCCCGATTATCCAATGTTTCCCCAA
TTTTTCCAGAAAAATTTTCCGATTTCTGAAAAATCGGGTCATTGTGTGAA
ACTCGAGGAAAATTTGCGTGAATGCGTGAATTTCGAAAAAAAAATGCGTA
ATTGCGTGAATTGAGGGTCCGCTGGGGGGGCCTCATTTATTGAAAAGTTT
TGTTTTTCAAAATGTTTTAGATGTCTTAAAACCTTTTTCATCTAAAGGGA
TGATCAGATACAATCAAAGTCAAAATAATAATCTTCAGTTTTAGCTGCAA
ACGATAACAATTCAACCTACTGTCTGGCTCAAAATAAAATCCTTGACGTA
GATAAATGATTTTACATTTAGAAATTAATCTTTCTTTTAGATAATACTGC
TCCTGGTCAAGAAGACTTTATTCAAAGCCTATAAGATAGACGTTTCGTAA
CTAATGCTTCAATGGGTCCTGTTCAAATAGTTTTATTTTGCTCTAGTAAT
TTAACCGTATTTTTACTAAATTTACACTTCTAGAACAGCCTTGTTCCTAT
CCACAGGTAGATTTTGTAGTATTCTTGATCTCCAGCTATTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025609-exon-sc0000540-1575043694:188495..188523 | TCONS_00025609-exon-sc0000540-1575043694:188495..188523 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1575043694:188198..188292 | TCONS_00025609-exon-sc0000540-1575043694:188198..188292 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1575043694:187230..187433 | TCONS_00025609-exon-sc0000540-1575043694:187230..187433 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1510915933:188495..188523 | TCONS_00025609-exon-sc0000540-1510915933:188495..188523 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1510915933:188198..188292 | TCONS_00025609-exon-sc0000540-1510915933:188198..188292 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1510915933:187230..187433 | TCONS_00025609-exon-sc0000540-1510915933:187230..187433 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1491911889:188495..188523 | TCONS_00025609-exon-sc0000540-1491911889:188495..188523 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1491911889:188198..188292 | TCONS_00025609-exon-sc0000540-1491911889:188198..188292 | Clytia hemisphaerica | exon |
| TCONS_00025609-exon-sc0000540-1491911889:187230..187433 | TCONS_00025609-exon-sc0000540-1491911889:187230..187433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000540 | supercontig | sc0000540:187230..188523 - |
Blast
The following BLAST results are available for this feature:
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