TCONS_00025614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025614
Unique NameTCONS_00025614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025614 ID=TCONS_00025614|Name=TCONS_00025614|organism=Clytia hemisphaerica|type=transcript|length=1056bp
CAAAAATCTTCTAATTATGTGAATAGTTTTCTAGAATTGAAAAGAATTCA
ATCAGTCGtgagaaaatatgcaattaaaatacgatcaaaacaaaagaatg
caATTACTACTTCGCACGTTAAAAAGAAATCCCATTGGCACTAAGGGACC
CCTCACAGACGCGCttcattttgattaaaaacactTGATAACTCTCTATT
AATTCATATCTCTATGAGTGGATagtactgaggttaagcatacaagGATA
ATcgcgacgacggacgaaaaatgtacaaggctagtgaaaattcgaaattt
gattggttgaaactcgctagcctgttaaatttgcGTTCCTCGTCGtaatt
ttaccgatttacttaacctcactagtGAGAACCAATGGGTCGGTGATGGG
TATGTACCAGGTGGgttttaattgtaaaaattgatTGTAAAATTTAGAAC
AGCAGAACAACATTTAGAATATTATCTTTGAATAAGTTATGCACGTTTGT
ATTTTACAGTACTTTTTTTAACCCACCTGGTATTTAAAATGCCATATTTT
CACATCATTTATAAAGTGTAGCATTCATATTTCCAGTCATTACAAATATC
ATGTCGGTCTTCTTTGACCACATAGACAGTCCACCGATTTACATTGACAA
TCTTTCACAACAAGCAACTTAACTGTTTCATGATGAATCCCACAATTTAT
TGTCATTTCGATTTCTGAAATCTCAGGGCGGCACATTACACACAAATCCG
ACGGCGTCAATCGCGGGTCATCAGGATTCGGGATGAAACGTAACCCGCAT
ATCCCTGCACATCTTCTGTTGTAAATTTTCAACGTGTGTCCTTGACAGTT
TTTGCTTTCAAGCTTAATTTCTTGTACAAAATCAATACTGTGGCAGAATC
TTGTTCCATTTATGTGAGGAGTGGATATTGATTGTCCTTGATTGCCGATT
GATTTCTCAAACCATGTGAACAGATATACTAACATTAGCAATATATACTT
AGTCATTGCTGCTTgaaaacttttcttctttaaCTTTATGTTTGAATGAA
TTTATC
Run BLAST on NCBI

protein sequence of TCONS_00025614-protein

>TCONS_00025614-protein ID=TCONS_00025614-protein|Name=TCONS_00025614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MTKYILLMLVYLFTWFEKSIGNQGQSISTPHINGTRFCHSIDFVQEIKLE
SKNCQGHTLKIYNRRCAGICGLRFIPNPDDPRLTPSDLCVMCRPEISEIE
MTINCGIHHETVKLLVVKDCQCKSVDCLCGQRRPT
Run BLAST on NCBI

transcript from alignment at sc0000540:94371..95426

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025614 ID=TCONS_00025614|Name=TCONS_00025614|organism=Clytia hemisphaerica|type=transcript|length=1056bp|location=Sequence derived from alignment at sc0000540:94371..95426 (Clytia hemisphaerica)
GATAAATTCATTCAAACATAAAGttaaagaagaaaagttttcAAGCAGCA
ATGACTAAGTATATATTGCTAATGTTAGTATATCTGTTCACATGGTTTGA
GAAATCAATCGGCAATCAAGGACAATCAATATCCACTCCTCACATAAATG
GAACAAGATTCTGCCACAGTATTGATTTTGTACAAGAAATTAAGCTTGAA
AGCAAAAACTGTCAAGGACACACGTTGAAAATTTACAACAGAAGATGTGC
AGGGATATGCGGGTTACGTTTCATCCCGAATCCTGATGACCCGCGATTGA
CGCCGTCGGATTTGTGTGTAATGTGCCGCCCTGAGATTTCAGAAATCGAA
ATGACAATAAATTGTGGGATTCATCATGAAACAGTTAAGTTGCTTGTTGT
GAAAGATTGTCAATGTAAATCGGTGGACTGTCTATGTGGTCAAAGAAGAC
CGACATGATATTTGTAATGACTGGAAATATGAATGCTACACTTTATAAAT
GATGTGAAAATATGGCATTTTAAATACCAGGTGGGTTAAAAAAAGTACTG
TAAAATACAAACGTGCATAACTTATTCAAAGATAATATTCTAAATGTTGT
TCTGCTGTTCTAAATTTTACAatcaatttttacaattaaaacCCACCTGG
TACATACCCATCACCGACCCATTGGTTCTCactagtgaggttaagtaaat
cggtaaaattaCGACGAGGAACgcaaatttaacaggctagcgagtttcaa
ccaatcaaatttcgaattttcactagccttgtacatttttcgtccgtcgt
cgcgATTATCcttgtatgcttaacctcagtactATCCACTCATAGAGATA
TGAATTAATAGAGAGTTATCAagtgtttttaatcaaaatgaaGCGCGTCT
GTGAGGGGTCCCTTAGTGCCAATGGGATTTCTTTTTAACGTGCGAAGTAG
TAATtgcattcttttgttttgatcgtattttaattgcatattttctcaCG
ACTGATTGAATTCTTTTCAATTCTAGAAAACTATTCACATAATTAGAAGA
TTTTTG

Coding sequence (CDS) from alignment at sc0000540:94371..95426

>TCONS_00025614 ID=TCONS_00025614|Name=TCONS_00025614|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000540:94371..95426 (Clytia hemisphaerica)
ATGACTAAGTATATATTGCTAATGTTAGTATATCTGTTCACATGGTTTGA
GAAATCAATCGGCAATCAAGGACAATCAATATCCACTCCTCACATAAATG
GAACAAGATTCTGCCACAGTATTGATTTTGTACAAGAAATTAAGCTTGAA
AGCAAAAACTGTCAAGGACACACGTTGAAAATTTACAACAGAAGATGTGC
AGGGATATGCGGGTTACGTTTCATCCCGAATCCTGATGACCCGCGATTGA
CGCCGTCGGATTTGTGTGTAATGTGCCGCCCTGAGATTTCAGAAATCGAA
ATGACAATAAATTGTGGGATTCATCATGAAACAGTTAAGTTGCTTGTTGT
GAAAGATTGTCAATGTAAATCGGTGGACTGTCTATGTGGTCAAAGAAGAC
CGACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014376XLOC_014376Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025614-proteinTCONS_00025614-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025614-exon-sc0000540-1491911889:94371..95426TCONS_00025614-exon-sc0000540-1491911889:94371..95426Clytia hemisphaericaexon
TCONS_00025614-exon-sc0000540-1510915933:94371..95426TCONS_00025614-exon-sc0000540-1510915933:94371..95426Clytia hemisphaericaexon
TCONS_00025614-exon-sc0000540-1575043694:94371..95426TCONS_00025614-exon-sc0000540-1575043694:94371..95426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000540supercontigsc0000540:94371..95426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.209432	0	0.0948518	0.0463988	0.112972	0.0446361	1.99251	1.15955	1.83543	1.61767	0.466801	1.95273	7.38218	4.86025	5.0423	7.19787	2.20107	1.45031	0.178104	0.27956	0.404981	0.177782	0.144078	0.218313	0.134915	0.20068	0.229738	0	0.232453	0.189466
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029034Cystine-knot_cytokine
IPR004133DAN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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