TCONS_00025653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025653
Unique NameTCONS_00025653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025653 ID=TCONS_00025653|Name=TCONS_00025653|organism=Clytia hemisphaerica|type=transcript|length=286bp
TATTATGTTTTAATAGCTAAAAAAAGACATGGGTAcaagctttttgctta
tagctatATAGGTAAATACTTTTGAAACATGAACAGCCATGTGTCCTACA
TTCAGGTGACAGGGAGAGATTCATCCTCAAAATTTGGCTTTGCGTCAAAG
TTTTACTAGCCAAAGGAATATTCTTGCTAAACATACGATGATTATGTTTA
TATATTTTCTACTGTCTGGATTTCTGTCTCATTTGAATGGTTTAACTCTT
TAAATAATACacaaagaaataagaaaataacataag
Run BLAST on NCBI

transcript from alignment at sc0000541:158112..158397

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025653 ID=TCONS_00025653|Name=TCONS_00025653|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0000541:158112..158397 (Clytia hemisphaerica)
cttatgttattttcttatttctttgtGTATTATTTAAAGAGTTAAACCAT
TCAAATGAGACAGAAATCCAGACAGTAGAAAATATATAAACATAATCATC
GTATGTTTAGCAAGAATATTCCTTTGGCTAGTAAAACTTTGACGCAAAGC
CAAATTTTGAGGATGAATCTCTCCCTGTCACCTGAATGTAGGACACATGG
CTGTTCATGTTTCAAAAGTATTTACCTATatagctataagcaaaaagctt
gTACCCATGTCTTTTTTTAGCTATTAAAACATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014398XLOC_014398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025653-exon-sc0000541-1491911889:158112..158397TCONS_00025653-exon-sc0000541-1491911889:158112..158397Clytia hemisphaericaexon
TCONS_00025653-exon-sc0000541-1510915933:158112..158397TCONS_00025653-exon-sc0000541-1510915933:158112..158397Clytia hemisphaericaexon
TCONS_00025653-exon-sc0000541-1575043694:158112..158397TCONS_00025653-exon-sc0000541-1575043694:158112..158397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000541supercontigsc0000541:158112..158397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.926383	3.55122	1.23522	0	0	0.600155	1.15779	0.956073	0.463994	0	0.418125	0.701103	0.260056	1.23761	1.03281	0.704774	0	1.01889	0.780776	0.804813	0.817342	1.22024	1.25565	1.06814	2.41365	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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