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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025659 ID=TCONS_00025659|Name=TCONS_00025659|organism=Clytia hemisphaerica|type=transcript|length=509bp
GGCGGGTTGTCATATTCAGTTTCcggaaaagaaaatattatttatgcatc
tttcgtctttatttttttcaatttttacttctaatttcatttcttctttt
tcggtaattttctcaatatttcgtctcagtttttgttttcaactttaTTT
AATTCAAGAGACACGATGTTAAATGGCTGCTTCTTCTTAAGGTTGTCTAT
CATTTCTGCGTTATCTTACGAAGCGAGCGCTTTTTCCGCTTCATTTACGA
ATGCTTTGAAAGACACAAAAACAACAGATGAAAATGCCATCGTGCTCCAG
AAGCCAAACATTGGCCACTGTTTGGCCACATGCAATTTCGTTGAAGGTGG
ATGTCAATCAATCAGTTGGCATGGTGATGATAAGATTTGTCAGATCGTCA
AAAATGACGGCACTGAAAATGATGGAGATAATGAATTGACGGGTTTTGCT
TCTGGATGGGTTTATTACCGGAAAAATGAACAACCGGTAATTATTATAGA
GTTTTAAGA Run BLAST on NCBI protein sequence of TCONS_00025659-protein >TCONS_00025659-protein ID=TCONS_00025659-protein|Name=TCONS_00025659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MLNGCFFLRLSIISALSYEASAFSASFTNALKDTKTTDENAIVLQKPNIG
HCLATCNFVEGGCQSISWHGDDKICQIVKNDGTENDGDNELTGFASGWVY
YRKNEQPVIIIEF Run BLAST on NCBI transcript from alignment at sc0000542:11105..12606+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025659 ID=TCONS_00025659|Name=TCONS_00025659|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at sc0000542:11105..12606+ (Clytia hemisphaerica)
GGCGGGTTGTCATATTCAGTTTCcggaaaagaaaatattatttatgcatc
tttcgtctttatttttttcaatttttacttctaatttcatttcttctttt
tcggtaattttctcaatatttcgtctcagtttttgttttcaactttaTTT
AATTCAAGAGACACGATGTTAAATGGCTGCTTCTTCTTAAGGTAAAAATT
TCTCCATTAACCTTTTATTTCAACGcaccacagatttataaagcccgaag
ggcaagATCGCATGATTTTAGCTGAAAAGTGTGCGTAGTTCGGTAGGTAA
TCTTACTTAAGTCCTGTTgttattacaatagaatttcagcacatgaccaa
taagaagctaagcggtatttcaaaaacaaaagtaatattttttgcgatat
ttacttttttgcttggaaaagcttaaagcACTCTATCTAGCTCTTTGTGC
CACGCACCCACATAGCCAGTAGCCTATGAAACTCAATTTTTATGCACTAT
ACCTTTCGGGACAAGAGGTTTCCAGAACTTTTGTAGCTATCATGGGAATA
TATAGTTTTGTAGAAAATAAGTTGGCTTATTACCCCCTTTCCCTTTGAGT
TGTATCTTGCTGACGTAAAACGTCGGCGGTCTGAATgggattttgttttt
caaaaaggtgCACTCTGCTCTGGTGGGACAAATACTAGAGATATTACGGA
ATCCAactatgtaatagttatcggacagttacgagtacaatatgagaaat
attttacgagttccgagatttttctgtaaaatatacagaaaatccggaac
gagtgaaatatttccatattgtacgagcaaatgtctgataacttgtttat
cggtgacccaaaaaatgcactttttgtgttggaaaaaagcgcagagcact
tttgtagcaaagtggcgttagattgcttctatcGCTACAATGCAGCAACA
TCTTCTCGTCAATTTATATCTGGCTGGGTACAACAAAGGGTCTTACTGGA
AGTTCTCTCCATAAGTGataagacaaaaaaaatgccCAGCTGagacacaa
cgttgtttcagcgTTTGTATAATGTtcccaacgtccatataaccTCAGAT
GAACGTTTAAACAATGTCTCAGCAGATAGTAGGAGATTCGTTAAATGATT
TCCTTTAATGATCAAATATTCTCAATCACTTTAGGTTGTCTATCATTTCT
GCGTTATCTTACGAAGCGAGCGCTTTTTCCGCTTCATTTACGAATGCTTT
GAAAGACACAAAAACAACAGATGAAAATGCCATCGTGCTCCAGAAGCCAA
ACATTGGCCACTGTTTGGCCACATGCAATTTCGTTGAAGGTGGATGTCAA
TCAATCAGTTGGCATGGTGATGATAAGATTTGTCAGATCGTCAAAAATGA
CGGCACTGAAAATGATGGAGATAATGAATTGACGGGTTTTGCTTCTGGAT
GGGTTTATTACCGGAAAAATGAACAACCGGTAATTATTATAGAGTTTTAA
GA Coding sequence (CDS) from alignment at sc0000542:11105..12606+ >TCONS_00025659 ID=TCONS_00025659|Name=TCONS_00025659|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000542:11105..12606+ (Clytia hemisphaerica)
ATGTTAAATGGCTGCTTCTTCTTAAGGTTGTCTATCATTTCTGCGTTATC
TTACGAAGCGAGCGCTTTTTCCGCTTCATTTACGAATGCTTTGAAAGACA
CAAAAACAACAGATGAAAATGCCATCGTGCTCCAGAAGCCAAACATTGGC
CACTGTTTGGCCACATGCAATTTCGTTGAAGGTGGATGTCAATCAATCAG
TTGGCATGGTGATGATAAGATTTGTCAGATCGTCAAAAATGACGGCACTG
AAAATGATGGAGATAATGAATTGACGGGTTTTGCTTCTGGATGGGTTTAT
TACCGGAAAAATGAACAACCGGTAATTATTATAGAGTTTTAAATGTTAAA
TGGCTGCTTCTTCTTAAGGTTGTCTATCATTTCTGCGTTATCTTACGAAG
CGAGCGCTTTTTCCGCTTCATTTACGAATGCTTTGAAAGACACAAAAACA
ACAGATGAAAATGCCATCGTGCTCCAGAAGCCAAACATTGGCCACTGTTT
GGCCACATGCAATTTCGTTGAAGGTGGATGTCAATCAATCAGTTGGCATG
GTGATGATAAGATTTGTCAGATCGTCAAAAATGACGGCACTGAAAATGAT
GGAGATAATGAATTGACGGGTTTTGCTTCTGGATGGGTTTATTACCGGAA
AAATGAACAACCGGTAATTATTATAGAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025659-exon-sc0000542-1491911889:11105..11295 | TCONS_00025659-exon-sc0000542-1491911889:11105..11295 | Clytia hemisphaerica | exon |
| TCONS_00025659-exon-sc0000542-1510915933:11105..11295 | TCONS_00025659-exon-sc0000542-1510915933:11105..11295 | Clytia hemisphaerica | exon |
| TCONS_00025659-exon-sc0000542-1575043694:11105..11295 | TCONS_00025659-exon-sc0000542-1575043694:11105..11295 | Clytia hemisphaerica | exon |
| TCONS_00025659-exon-sc0000542-1491911889:12289..12606 | TCONS_00025659-exon-sc0000542-1491911889:12289..12606 | Clytia hemisphaerica | exon |
| TCONS_00025659-exon-sc0000542-1510915933:12289..12606 | TCONS_00025659-exon-sc0000542-1510915933:12289..12606 | Clytia hemisphaerica | exon |
| TCONS_00025659-exon-sc0000542-1575043694:12289..12606 | TCONS_00025659-exon-sc0000542-1575043694:12289..12606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000542 | supercontig | sc0000542:11105..12606 + |
Blast
The following BLAST results are available for this feature:
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