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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025667 ID=TCONS_00025667|Name=TCONS_00025667|organism=Clytia hemisphaerica|type=transcript|length=2245bp
CAAAGATTTTACATATAAACTGTCAAACTTGTAACTTTACTTTACATCTT
ATCTGCTGAGTGGAATATTGTGACGATACTAGACTAGAAGACTCTAGAAG
AATCTATTAAAAACAGCTCTGAGAAACACTAGTTATAAGTTGAGAACCGT
TCACTAAAAATTGGAACGAAGTTTATTCTTAACAAAACTTGTTTCCGAGA
AAGACGCTATAAAGACATTTGGGTAGTGAAAGAATGGCGATCCATCTTAA
AACTTTTATACTTCTGGTTTTGCTTTTCATTGCTTTGACGCACTCCATAA
GCATCAATACCAGCCAATCAGCAGAAACGTCTGGTGcgattgataaaaag
aaagataCTGCAAACTTGAAAATGCCTTGGTTCGAGAATGTCGATTTCAA
ACGAAACATTAAGAAAGAACTTCATGAAGAGAATTCTGACGACAAGAATA
CAAAGTTTACCAAGGAACTGAGAAAtggtgtcgaggaaaaagcaGACACT
CACAACATTGGGCAACAAGACGGTGAAAAGGCTTCCAGTTTCATCAAGAG
AGAATCCAAGAAATACCGGAGATCAAATGGCaagaaaaaccaaaagaaaa
caaacttgttttTAATCTTAGAACAACTCTTGATGAAGAACATTGCTAAA
GAATTTAAAAACCTCAGATCCAAACAACCTGACGATGCACCTGGCCTAGC
TTGGAAAAGACAAATAGCCTTGAAGCAAGCCCCCAATCTTCCATGGAAAA
AATCGACAAAACGTCAAGCTATCTCGTTGGGGGCTCTAAAGCTATCAAGG
TTTTATGGAGATATGACTTCATTGGACAATCAAGATATCGCCAAAAAACA
ATCAGTTGGAATATGGAGACCTAGATTTTCTGGAGACTCAACTTACCAAA
GAGTCATCTCAAACACTGGTATTGGTGCGACGCGGTTTTTCGGTGACCAT
CAAACTGGCTCTAAATCTGGACCACGTTTCTTCGGAGATTCTCTTAAAGC
AGATCAACCTGAACGTCCTTTTATCGTTTTCTCCAAGACGAGATTCTCCG
GAGACCAACAAAGTGGACCCTATACTGGGTCCAGCGCTACTCGATTTTTT
GGCGATCAAGAAAATCCTCTTTCTGGTTATGGATCGAATCGATTTTTCGG
TGATCAGCCTGACACTTCCTCGCCTCGATTCTTCGGGGACTCAATGAATC
AAGACAACCCTATGACTGGCGCTGGAGCGACTCGATTTTTCGGCGACGTT
CATTACCAGGAAGGCCCGAACGTCGGTCCCCGATTCTTTGGTGATATGCT
GAATCAAAACATCCCAACATCTGGCTCTGGTGCAACTCGATTTTTCGGCG
ACGCTGGCAGGCTTTCAGTAGAGAAAAGCAATGACCAAAGTTCAAAAAAA
GAGTCTGTTGAAGCAGATGATATTTCGATGAAAAATATCCGAAGTAAACG
TCAAATGATTCTGACAGATCTTGCGTATCCGAAGCCAAAAAGAATACCAA
CTGCTGTATCATCTGGGCTAACTCGTTTCAGTGGTTCACGGAACAGGTTT
TCAGGGGACAGCCGACAGACCAAGAAATCGAACATTCCTTGGTATGAAAA
CTTAGAGGAGGGAGCGGAAGGGAGGAAGAAGCCGATGAAGATTGGAGGGA
TTTAAAAGACAATtactaaaagtttaaaaattcgagaaaacaCTTCAAAC
TtgatcaaaatatattgagattttagtacATTTGAACGTAATTCGATTGT
AGTACCACTAACTTATCTTGTAAAATCTTAACATTTGGGCTTTCCCAAAA
AACAATTGAATATGGAAGGGggttggaggatataacaatttttggtAATT
TACCCCTCGAAAATTTACCCCTGATTTTTAACCCCCCTTCCCCCCGAACA
ACATGTCCAGCCCCcaacaagcatcagttgaccccctggacattcaaaat
tatccCCACTCAGAGTAAAATCACCgtcaaacagagcaagtttaccgtCC
GGATAAGGAAAATCTTATAGATTTTTCACCACCCCTGGACACGTATCCTC
TACCCCCACCATCTACGAACATTTTGTGGAAGTACCCATTATAATGATAG
GATTATATGATTTTCCAAGATAGATGTACCTAGTTCTATAATGGGCGAGA
CTTAATTATTCAAATTCATATatgaaattataaattatatttAATGTTTG
CAAGTATCTAAAATACATAGAAAGAGATCGTAATCTGGACATGGA Run BLAST on NCBI protein sequence of TCONS_00025667-protein >TCONS_00025667-protein ID=TCONS_00025667-protein|Name=TCONS_00025667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MAIHLKTFILLVLLFIALTHSISINTSQSAETSGAIDKKKDTANLKMPWF
ENVDFKRNIKKELHEENSDDKNTKFTKELRNGVEEKADTHNIGQQDGEKA
SSFIKRESKKYRRSNGKKNQKKTNLFLILEQLLMKNIAKEFKNLRSKQPD
DAPGLAWKRQIALKQAPNLPWKKSTKRQAISLGALKLSRFYGDMTSLDNQ
DIAKKQSVGIWRPRFSGDSTYQRVISNTGIGATRFFGDHQTGSKSGPRFF
GDSLKADQPERPFIVFSKTRFSGDQQSGPYTGSSATRFFGDQENPLSGYG
SNRFFGDQPDTSSPRFFGDSMNQDNPMTGAGATRFFGDVHYQEGPNVGPR
FFGDMLNQNIPTSGSGATRFFGDAGRLSVEKSNDQSSKKESVEADDISMK
NIRSKRQMILTDLAYPKPKRIPTAVSSGLTRFSGSRNRFSGDSRQTKKSN
IPWYENLEEGAEGRKKPMKIGGI Run BLAST on NCBI transcript from alignment at sc0000542:54296..56764+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025667 ID=TCONS_00025667|Name=TCONS_00025667|organism=Clytia hemisphaerica|type=transcript|length=2469bp|location=Sequence derived from alignment at sc0000542:54296..56764+ (Clytia hemisphaerica)
CAAAGATTTTACATATAAACTGTCAAACTTGTAACTTTACTTTACATCTT
ATCTGCTGAGTGGAATATTGTGACGATACTAGACTAGAAGACTCTAGAAG
AATCTATTAAAAACAGCTCTGAGAAACACTAGTTATAAGTTGAGAACCGT
TCACTAAAAATTGGAACGAAGTTTATTCTTAACAAAACTTGTTTCCGAGA
AAGACGCTATAAAGACATTTGGGTAGTGAAAGAATGGCGATCCATCTTAA
AACTTTTATACTTCTGGTTTTGCTTTTCATTGCTTTGACGCACTCCATAA
GCATCAATACCAGCCAATCAGCAGAAACGTCTGGTGcgattgataaaaag
aaagataCTGCAAACTTGAAAATGCCTTGGTTCGAGAATGTCGATTTCAA
ACGAAACATTAAGAAAGAACTTCATGAAGAGAATTCTGACGACAAGAATA
CAAAGTTTACCAAGGAACTGAGAAAtggtgtcgaggaaaaagcaGACACT
CACAACATTGGGCAACAAGACGGTGAAAAGGCTTCCAGTTTCATCAAGAG
AGAATCCAAGAAATACCGGAGATCAAATGGCaagaaaaaccaaaagaaaa
caaacttgttttTAATCTTAGAACAACTCTTGATGAAGAACATTGCTAAA
GAATTTAAAAACCTCAGATCCAAACAACCTGACGATGCACCTGGCCTAGC
TTGGAAAAGACAAATAGCCTTGAAGCAAGCCCCCAATCTTCCATGGAAAA
AATCGACAAAACGTCAAGCTATCTCGTTGGGGGCTCTAAAGCTATCAAGG
TTTTATGGAGATATGACTTCATTGGACAATCAAGATATCGCCAAAAAACA
ATCAGTTGGAATATGGAGACCTAGATTTTCTGGAGACTCAACTTACCAAA
GAGTCATCTCAAACACTGGTATTGGTGCGACGCGGTTTTTCGGTGACCAT
CAAACTGGCTCTAAATCTGGACCACGTTTCTTCGGAGATTCTCTTAAAGC
AGATCAACCTGAACGTCCTTTTATCGTTTTCTCCAAGACGAGATTCTCCG
GAGACCAACAAAGTGGACCCTATACTGGGTCCAGCGCTACTCGATTTTTT
GGCGATCAAGAAAATCCTCTTTCTGGTTATGGATCGAATCGATTTTTCGG
TGATCAGCCTGACACTTCCTCGCCTCGATTCTTCGGGGACTCAATGAATC
AAGACAACCCTATGACTGGCGCTGGAGCGACTCGATTTTTCGGCGACGTT
CATTACCAGGAAGGTCCAAACACTGGTACCCGATTCTTTGGTGATATGCT
GAATCAAAACATCCCAACATCTGGCTCTGGTGCGACTCGATTTCTCGGTG
ACGCTCATTACCAGGAAGGCCCGAACGTCGGTCCCCGATTCTTTGGTGAT
ATGCTGAATCAAAACATCCCAACATCTGGCTCTGGTGCAACTCGATTTTT
CGGCGACGCTGGCAGGCTTTCAGTAGAGAAAAGCAATGACCAAAGTTCAA
AAAAAGAGTCTGTTGAAGCAGATGATATTTCGATGAAAAATATCCGAAGT
AAACGTCAAATGATTCTGACAGATCTTGCGTATCCGAAGCCAAAAAGAAT
ACCAACTGCTGTATCATCTGGGCTAACTCGTTTCAGTGGTTCACGGAACA
GGTTTTCAGGGGACAGCCGACAGACCAAGAAATCGAACATTCCTTGGTAT
GAAAACTTAGAGGAGGGAGCGGAAGGGAGGAAGAAGCCGATGAAGATTGG
AGGGATTTAAAAGACAATtactaaaagtttaaaaattcgagaaaacaCTT
CAAACTtgatcaaaatatattgagattttagtacaTTTGAACGTAAATCG
ATTGTAGTACCACTAACTCATCTTGTGAAAATCTTAACATTTGGGCTTTC
CCAGAAAACAATTGAATATGGGGGAAGGGGGTTGGAGNAGATTATTTTAG
TACATTTGAACGTAATTCGATTGTAGTACCACTAACTTATCTTGTAAAAT
CTTAACATTTGGGCTTTCCCAAAAAACAATTGAATATGGAAGGGggttgg
aggatataacaatttttggtAATTTACCCCTCGAAAATTTACCCCTGATT
TTTAACCCCCCTTCCCCCCGAACAACATGTCCAGCCCCcaacaagcatca
gttgaccccctggacattcaaaattatccCCACTCAGAGTAAAATCACCg
tcaaacagagcaagtttaccgtCCGGATAAGGAAAATCTTATAGATTTTT
CACCACCCCTGGACACGTATCCTCTACCCCCACCATCTACGAACATTTTG
TGGAAGTACCCATTATAATGATAGGATTATATGATTTTCCAAGATAGATG
TACCTAGTTCTATAATGGGCGAGACTTAATTATTCAAATTCATATatgaa
attataaattatatttAATGTTTGCAAGTATCTAAAATACATAGAAAGAG
ATCGTAATCTGGACATGGA Coding sequence (CDS) from alignment at sc0000542:54296..56764+ >TCONS_00025667 ID=TCONS_00025667|Name=TCONS_00025667|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000542:54296..56764+ (Clytia hemisphaerica)
ATGGCGATCCATCTTAAAACTTTTATACTTCTGGTTTTGCTTTTCATTGC
TTTGACGCACTCCATAAGCATCAATACCAGCCAATCAGCAGAAACGTCTG
GTGcgattgataaaaagaaagataCTGCAAACTTGAAAATGCCTTGGTTC
GAGAATGTCGATTTCAAACGAAACATTAAGAAAGAACTTCATGAAGAGAA
TTCTGACGACAAGAATACAAAGTTTACCAAGGAACTGAGAAAtggtgtcg
aggaaaaagcaGACACTCACAACATTGGGCAACAAGACGGTGAAAAGGCT
TCCAGTTTCATCAAGAGAGAATCCAAGAAATACCGGAGATCAAATGGCaa
gaaaaaccaaaagaaaacaaacttgttttTAATCTTAGAACAACTCTTGA
TGAAGAACATTGCTAAAGAATTTAAAAACCTCAGATCCAAACAACCTGAC
GATGCACCTGGCCTAGCTTGGAAAAGACAAATAGCCTTGAAGCAAGCCCC
CAATCTTCCATGGAAAAAATCGACAAAACGTCAAGCTATCTCGTTGGGGG
CTCTAAAGCTATCAAGGTTTTATGGAGATATGACTTCATTGGACAATCAA
GATATCGCCAAAAAACAATCAGTTGGAATATGGAGACCTAGATTTTCTGG
AGACTCAACTTACCAAAGAGTCATCTCAAACACTGGTATTGGTGCGACGC
GGTTTTTCGGTGACCATCAAACTGGCTCTAAATCTGGACCACGTTTCTTC
GGAGATTCTCTTAAAGCAGATCAACCTGAACGTCCTTTTATCGTTTTCTC
CAAGACGAGATTCTCCGGAGACCAACAAAGTGGACCCTATACTGGGTCCA
GCGCTACTCGATTTTTTGGCGATCAAGAAAATCCTCTTTCTGGTTATGGA
TCGAATCGATTTTTCGGTGATCAGCCTGACACTTCCTCGCCTCGATTCTT
CGGGGACTCAATGAATCAAGACAACCCTATGACTGGCGCTGGAGCGACTC
GATTTTTCGGCGACGTTCATTACCAGGAAGGCCCGAACGTCGGTCCCCGA
TTCTTTGGTGATATGCTGAATCAAAACATCCCAACATCTGGCTCTGGTGC
AACTCGATTTTTCGGCGACGCTGGCAGGCTTTCAGTAGAGAAAAGCAATG
ACCAAAGTTCAAAAAAAGAGTCTGTTGAAGCAGATGATATTTCGATGAAA
AATATCCGAAGTAAACGTCAAATGATTCTGACAGATCTTGCGTATCCGAA
GCCAAAAAGAATACCAACTGCTGTATCATCTGGGCTAACTCGTTTCAGTG
GTTCACGGAACAGGTTTTCAGGGGACAGCCGACAGACCAAGAAATCGAAC
ATTCCTTGGTATGAAAACTTAGAGGAGGGAGCGGAAGGGAGGAAGAAGCC
GATGAAGATTGGAGGGATTTAAATGGCGATCCATCTTAAAACTTTTATAC
TTCTGGTTTTGCTTTTCATTGCTTTGACGCACTCCATAAGCATCAATACC
AGCCAATCAGCAGAAACGTCTGGTGcgattgataaaaagaaagataCTGC
AAACTTGAAAATGCCTTGGTTCGAGAATGTCGATTTCAAACGAAACATTA
AGAAAGAACTTCATGAAGAGAATTCTGACGACAAGAATACAAAGTTTACC
AAGGAACTGAGAAAtggtgtcgaggaaaaagcaGACACTCACAACATTGG
GCAACAAGACGGTGAAAAGGCTTCCAGTTTCATCAAGAGAGAATCCAAGA
AATACCGGAGATCAAATGGCaagaaaaaccaaaagaaaacaaacttgttt
tTAATCTTAGAACAACTCTTGATGAAGAACATTGCTAAAGAATTTAAAAA
CCTCAGATCCAAACAACCTGACGATGCACCTGGCCTAGCTTGGAAAAGAC
AAATAGCCTTGAAGCAAGCCCCCAATCTTCCATGGAAAAAATCGACAAAA
CGTCAAGCTATCTCGTTGGGGGCTCTAAAGCTATCAAGGTTTTATGGAGA
TATGACTTCATTGGACAATCAAGATATCGCCAAAAAACAATCAGTTGGAA
TATGGAGACCTAGATTTTCTGGAGACTCAACTTACCAAAGAGTCATCTCA
AACACTGGTATTGGTGCGACGCGGTTTTTCGGTGACCATCAAACTGGCTC
TAAATCTGGACCACGTTTCTTCGGAGATTCTCTTAAAGCAGATCAACCTG
AACGTCCTTTTATCGTTTTCTCCAAGACGAGATTCTCCGGAGACCAACAA
AGTGGACCCTATACTGGGTCCAGCGCTACTCGATTTTTTGGCGATCAAGA
AAATCCTCTTTCTGGTTATGGATCGAATCGATTTTTCGGTGATCAGCCTG
ACACTTCCTCGCCTCGATTCTTCGGGGACTCAATGAATCAAGACAACCCT
ATGACTGGCGCTGGAGCGACTCGATTTTTCGGCGACGTTCATTACCAGGA
AGGCCCGAACGTCGGTCCCCGATTCTTTGGTGATATGCTGAATCAAAACA
TCCCAACATCTGGCTCTGGTGCAACTCGATTTTTCGGCGACGCTGGCAGG
CTTTCAGTAGAGAAAAGCAATGACCAAAGTTCAAAAAAAGAGTCTGTTGA
AGCAGATGATATTTCGATGAAAAATATCCGAAGTAAACGTCAAATGATTC
TGACAGATCTTGCGTATCCGAAGCCAAAAAGAATACCAACTGCTGTATCA
TCTGGGCTAACTCGTTTCAGTGGTTCACGGAACAGGTTTTCAGGGGACAG
CCGACAGACCAAGAAATCGAACATTCCTTGGTATGAAAACTTAGAGGAGG
GAGCGGAAGGGAGGAAGAAGCCGATGAAGATTGGAGGGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00025667-exon-sc0000542-1491911889:54296..55558 | TCONS_00025667-exon-sc0000542-1491911889:54296..55558 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1510915933:54296..55558 | TCONS_00025667-exon-sc0000542-1510915933:54296..55558 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1575043694:54296..55558 | TCONS_00025667-exon-sc0000542-1575043694:54296..55558 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1491911889:55664..56129 | TCONS_00025667-exon-sc0000542-1491911889:55664..56129 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1510915933:55664..56129 | TCONS_00025667-exon-sc0000542-1510915933:55664..56129 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1575043694:55664..56129 | TCONS_00025667-exon-sc0000542-1575043694:55664..56129 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1491911889:56249..56764 | TCONS_00025667-exon-sc0000542-1491911889:56249..56764 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1510915933:56249..56764 | TCONS_00025667-exon-sc0000542-1510915933:56249..56764 | Clytia hemisphaerica | exon |
| TCONS_00025667-exon-sc0000542-1575043694:56249..56764 | TCONS_00025667-exon-sc0000542-1575043694:56249..56764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000542 | supercontig | sc0000542:54296..56764 + |
Blast
The following BLAST results are available for this feature:
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