TCONS_00025685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025685
Unique NameTCONS_00025685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025685 ID=TCONS_00025685|Name=TCONS_00025685|organism=Clytia hemisphaerica|type=transcript|length=924bp
AACCCACCgagtgtatgtaataaatatgATACCACAAAAATGTAGCAAAG
CTGGTACAtttaatttcattatttcaCGAACCACTTTTTTAATTATAATG
GGAATTATTTAACGTGTGATATATTCTATTCCGAGCACCTCATTggatga
attttaaaacaagtgAATCGTAAATAGCTCTTATTATAAAGCCTCAGTAT
AAAAAGAGACGAACCTAGGTTTTGAAAATCAAACGAAAAGCTAATTTCAA
GCGAAGAAGTATACAGTGCAATAGTGAAATTGCCGACAACAGAAAGCAAT
GGACATCAAAGTACTCATTTTATTCGCCGCGGTTTTGGCGATTGCTTATT
CCTATCGCATAAGCAATGACGACTCTAACACAGGAAGGAATTTCTACCAA
GCGCTACAAGATATGATTGACGAACGTGTGGCAGAAAAAATGGATCCTAA
ACATGAATGTAAATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGAT
GTCATAAGTATGTGAAGAAATGTGACGGCCCTTCAGGATGCACAGAAATT
GGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATT
GTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAG
ATTGTGCATACACCAGAGAAAAAGGATTGTTAGGAAAACCTGCTGGGGAG
GTTTGCGAAATTAAATATTCTGCTACTGGCTCCGGGCCAATATGTCATGG
ATCAAAAAATCCCTTAACTGcttaagatgaaaaaaaattgaatttgtcaa
TGGTCATGGACAGTGTTATGTATTATATACGATTTTATAACTTACACCGC
AATAATTTTctcgattttcttttgtttaatttcaggtgtttctttgtaat
ttttgaaaaacaacttttttaaat
Run BLAST on NCBI

protein sequence of TCONS_00025685-protein

>TCONS_00025685-protein ID=TCONS_00025685-protein|Name=TCONS_00025685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MDIKVLILFAAVLAIAYSYRISNDDSNTGRNFYQALQDMIDERVAEKMDP
KHECKFGGLCNNVYSYGCHKYVKKCDGPSGCTEIGTCWRQCYSNSKTWCR
LSDEARRDKFFSCQKDSDCAYTREKGLLGKPAGEVCEIKYSATGSGPICH
GSKNPLTA
Run BLAST on NCBI

transcript from alignment at sc0000542:214123..218689-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025685 ID=TCONS_00025685|Name=TCONS_00025685|organism=Clytia hemisphaerica|type=transcript|length=4567bp|location=Sequence derived from alignment at sc0000542:214123..218689- (Clytia hemisphaerica)
AACCCACCGAGTGTATGTAATAAATATGATACCACAAAAATGTAGCAAAG
CTGGTACATTTAATTTCATTATTTCACGAACCACTTTTTTAATTATAATG
GGAATTATTTAACGTGTGATATATTCTATTCCGAGCACCTCATTGGATGA
ATTTTAAAACAAGTGAATCGTAAATAGCTCTTATTATAAAGCCTCAGTAT
AAAAAGAGACGAACCTAGGTTTTGAAAATCAAACGAAAAGCTAATTTCAA
GCGAAGAAGTATACAGTGCAATAGTGAAATTGCCGACAACAGAAAGTAAG
TACAAATTTAATTAATCAGATTTTTGAAAGAACTGACTTTTCTAAAGTTT
TCTCACTACACTTTTTCAATAACTCCATAAGAAACCAATACTGAATCTGA
GTGACGAGATATTGAAACAAATTTTAAAGTTCAGCAAAATATAAACCGAA
ATTTTTTCTTGATGTTTTGTTAGGCAATGGACATCAAAGTACTCATTTTA
TTCGCCGCGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCAATGACGA
CTCTAACACAGGAAGGAATTTCTACCAAGCGCTACAAGATATGATTGACG
AACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTAAATTTGGAGGT
CTATGTAACAATGTTTACAGCTACGGATGTCATAAGTATGTGAAGAAATG
TGACGGCCCTTCAGGATGCACAGAAATTGTAAGTAATATTTTGAATGCAT
TTTGGTTTTGCAGCTCTCTGTGAATGTATTTTGACCACTTGATTGACAAC
CACTTTTGTATTGTTAGATGTAGAAATTGCCTAATAGAACCCTATGTACA
TTTACGTTAACTGTGCCTGAGAAACTAATGTAGTTTTTCACCCCTCTCCC
CGGCCGGGATTTCCCTTATTAATTTTCGCCCATCATTTCGCAAGATCGCA
CGGGAGAAAAAGGAAAGCAATCTATATATTAATACGCTTAAACGTGTGTG
TTTACAACGTTTTATAAAAAGTTTTCGAAAATCCAACAAAGCTTTACAAA
GCCTCCTCTTCATGGCGTTGAACCATCATCTTTTTGCACCTTAAGCAGAT
TTCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TAAAACTTTCTGTTTACAATAGCGGGCTCCCTATCACTTTCAAAACTTTT
TAAAACATTTTTATATAATACTTTGTCCCGGTTTGAACTTTGGTCTTTTT
GAATAACGTGCATTCTTAGGAACCAGTAAGCCAACTGTGGCTCGCGTAAA
ATTAGTTACTTCATTTAAGGGTATAGTAAGAGTCTTTCAAATTTTCACTT
TGAAATTGTCTCTCTAATCTATATATTAATATGCTTAAACGTGTGCGTTT
ACAACGTTTTATAAAAAGTTTTCGAAAATCCAACAAAGCTCTACAAAGCC
TCCTCTTCATGGCGTTGAACCATCATCTTTTTGCACCTTAAGCAGATTTC
CTACCACTAGACTAACTTTGAGACTCCAAGATACTATTTTCTATTCACCA
AGTTTGGAGCTTCATGGGTTAAAATCAACCTTCTTCCCAAATTTTTTTGT
CAATTGAAAGAATTTTTATCCAGATGCTCTTTAAAACTTTCTGTTTACAA
TAGCGGGCTCCCTATCACTTTCAAAACTTTTTAAAACATTTTTATATAAT
GCTTTGTCCCGGTTTGAACTTTGGTCTTTTTGAAGAACGTGCATTCTTAG
GAACCAGTAAGCCAACTGTGGCTCGCGTAAAATTAGTTACTTCATTCAAG
GGTATAGTAAGAGTCTTTCAAACTTTCACTTTGAAATTGTCTCTCTAATC
TATATATTAATACGCTTAAACGTGTGTGTTTACAACGTTTTATAAAAAGT
TTTCGAAAATCCAACAAAGCTCTACAGAGCCTCCTCTTCATGGCGTTGAA
CCATCATCTTTTTGCACCTTAAGCAGATTTCCTACCACTAGACTAACTTT
GAGACCCCAAGATACTATTTTCTATTCACCAAGTTTGGAGCTTGATGGGT
TAAAATCAAACTTCTTCCCAATTTTTTTTGTCATTTTAAAGAATTCTTAT
TTTTAAAACTTTTTGTTTACAATAGTGGCTCCCTATCACTTTCAAAACTT
TTCAAAGTCTTTCAAAGTCACCCTCGAATGTCCAACCACGATGGCTAGCC
ACGATGGCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCATCGATCGGCGGC
TATCTTTCTTCCGTTAGAATTTTTTAGATGTGTAGTGATTCACTGGATTG
GGACACGCAGCGTGCGACGCTGTGCATACGGCTAGTAGATTATATTATGA
GACTCTCAAATTGCAGTTTTCTTAAGAAACGCTTTGTGAGTAGCAATAAC
AATTTAAACGATGTAAGAATAGGAGTGGGCTGTACAGGGTCATTTTCATT
TTTTTCGTCAAATCATGTCAAACTAAATTTTCTTTAGCTCCGTATGGTAT
ATTTACGCAGGATTAAAAAGAATCTTTGAAATGTTTTAAATATAAAAAAT
GTGGGAGCTTCTTTTCTGGCCCCCTATTAGACTCGTATAAAGTATGACAA
AAAAATCCCCAATTTAACCTGGAAACCTTAAAAATCATTAAATTTTGCTG
CAATTTGGTACAAGGAGGACTTGTACCAAATTGCAGCAAAATTGCAGCAA
AATTAATAACAATATTTTTTCTGTATTATTCAAAAATTTTCATTATCGGA
CGTTTTAGGGCGTGGCCAAACCCCAAAAAGGGCAAATAGGATTGGGTAGC
TCTAGAAAACTTTGGAATGATATTTTTGCCCTAAAGTTTTGCATACCTAC
CCTCAGTTATCTATTTTGACGAATCCTGAGAATATTTCCCAAAGTAAATT
CGTTGTTTCGTAAATAATTGTTTTGATGTCTGTAAAAAAAGGGGAAATAT
AGACGGGCTAGGGCTCATTCATAAATTGTGTAATTCAATTGATATTCCCT
CTAGAAATTGGTACTCTTGATCCAAGAACAGTTTTGAAGCCTTTCAGAGT
CGAAATTCATTTAAAAGCTTCAACCGCTTTCAGATCCCTTTTTACGTCTT
CTGAACTTCACTGAGGTAGTGCTAAATTAAGGAAAGTGTTTTTATCACAT
AGAGCAAATTGTCGGCAGTTCTACGAGAATTTACATTATTTCAGATATAA
AAGAAGTGCTTAAAATTCACAAACATAAATTTTGGATTTTCTGTTGTTCA
AGATCATAGAAATAAAAGGTTGTAAAGTTTTCATATATTTAGGACGAGAA
GTCACTCCCTCTATGTAGGAAAAATAAAATTTTTAAGATCTCACAATTTA
CACTGACAAATCCTCACCTGAAGAGGTAATGTGTCAAATTTGAGCGGAAT
TAATCACTGTGTGTCTCATTTCCAACGTAATTTGGGTAGTTGGGAGATGG
AAAAAGATTGATTTTGAGGGCACAAACCTTAGTCTACAAAAAGGCTTCCC
ACATTTTTTTTCTTCATTTTTGTTCAAAAATTCTGTTTGATCCTGTCTAC
ACATATAAATTAGACCTCAAAAAAATTTAGTTTGACATTTTTTGAAAAAT
CACCTTGTATAGCCCACTCCTAGTAAGAAGCCAATATTCGATATTATGCC
AAAACTACTGTAAAGTACTCACATACAAAGGTAACAATTATTTTACGAAG
TTTAAATATCTATATAATTTCCGTATAATTTTTGTAACTTTAGGGAACTT
GCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATTGTCAGAC
GAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAGATTGTGC
ATACACCAGAGAAAAAGGATTGTTAGGAAAACCTGCTGGGGAGGTTTGCG
AAATTAAATATTCTGCTACTGGCTCCGGGCCAATATGTCATGGATCAAAA
AATCCCTTAACTGCTTAAGATGAAAAAAAATTGAATTTGTCAATGGTCAT
GGACAGTGTTATGTATTATATACGATTTTATAACTTACACCGCAATAATT
TTCTCGATTTTCTTTTGTTTAATTTCAGGTGTTTCTTTGTAATTTTTGAA
AAACAACTTTTTTAAAT

Coding sequence (CDS) from alignment at sc0000542:214123..218689-

>TCONS_00025685 ID=TCONS_00025685|Name=TCONS_00025685|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000542:214123..218689- (Clytia hemisphaerica)
GGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATT
GTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAG
ATTGTGCATACACCAGAGAAAAAGGATTGTTAGGAAAACCTGCTGGGGAG
GTTTGCGAAATTAAATATTCTGCTACTGGCTCCGGGCCAATATGTCATGG
ATCAAAAAATCCCTTAACTGCTTAAATGGACATCAAAGTACTCATTTTAT
TCGCCGCGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCAATGACGAC
TCTAACACAGGAAGGAATTTCTACCAAGCGCTACAAGATATGATTGACGA
ACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTAAATTTGGAGGTC
TATGTAACAATGTTTACAGCTACGGATGTCATAAGTATGTGAAGAAATGT
GACGGCCCTTCAGGATGCACAGAAATTGGAACTTGCTGGCGTCAATGTTA
CTCAAACTCGAAGACATGGTGTAGATTGTCAGACGAAGCCAGACGTGACA
AATTCTTTTCTTGTCAAAAAGATTCAGATTGTGCATACACCAGAGAAAAA
GGATTGTTAGGAAAACCTGCTGGGGAGGTTTGCGAAATTAAATATTCTGC
TACTGGCTCCGGGCCAATATGTCATGGATCAAAAAATCCCTTAACTGCTT
AAATGGACATCAAAGTACTCATTTTATTCGCCGCGGTTTTGGCGATTGCT
TATTCCTATCGCATAAGCAATGACGACTCTAACACAGGAAGGAATTTCTA
CCAAGCGCTACAAGATATGATTGACGAACGTGTGGCAGAAAAAATGGATC
CTAAACATGAATGTAAATTTGGAGGTCTATGTAACAATGTTTACAGCTAC
GGATGTCATAAGTATGTGAAGAAATGTGACGGCCCTTCAGGATGCACAGA
AATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014418XLOC_014418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025685-proteinTCONS_00025685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025685-exon-sc0000542-1575043694:218395..218689TCONS_00025685-exon-sc0000542-1575043694:218395..218689Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1575043694:217962..218216TCONS_00025685-exon-sc0000542-1575043694:217962..218216Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1575043694:214123..214496TCONS_00025685-exon-sc0000542-1575043694:214123..214496Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1510915933:218395..218689TCONS_00025685-exon-sc0000542-1510915933:218395..218689Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1510915933:217962..218216TCONS_00025685-exon-sc0000542-1510915933:217962..218216Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1510915933:214123..214496TCONS_00025685-exon-sc0000542-1510915933:214123..214496Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1491911889:218395..218689TCONS_00025685-exon-sc0000542-1491911889:218395..218689Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1491911889:217962..218216TCONS_00025685-exon-sc0000542-1491911889:217962..218216Clytia hemisphaericaexon
TCONS_00025685-exon-sc0000542-1491911889:214123..214496TCONS_00025685-exon-sc0000542-1491911889:214123..214496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:214123..218689 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6555.9	6932.99	6656.84	6569.77	3974.73	3700.9	6485.08	6176.74	9003.85	8952.85	6579.67	6393.4	1.1807	0.9649	1.16747	0.950408	1191.75	1724.25	22.3516	1.96476	4308.7	3887.52	2441.82	1830.12	42.4667	24.4068	94.5448	144.755	1041.62	1282.59
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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