TCONS_00025694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025694
Unique NameTCONS_00025694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025694 ID=TCONS_00025694|Name=TCONS_00025694|organism=Clytia hemisphaerica|type=transcript|length=261bp
ATTTATTCACATGATAGCAAATTTCAGCACAGTAACTTTTTTCAGGACAC
CTGGTATACGTgacaaatatgaaaaatgacAAAGCGATAAATGAAGAAGA
ctcataaaaagtaaaaagttagTATATTAACAACATAATTACAAGGAACT
AAGATAGTTATTAATCACGTGCTGGTCAAGTGAGCCTTCATCCACCCAAG
TTTTTTCCGCATACCCTAtccatttgatttgaaattcacGCTGCCCATTC
TTATCATTCCG
Run BLAST on NCBI

transcript from alignment at sc0000542:158932..159192

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025694 ID=TCONS_00025694|Name=TCONS_00025694|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0000542:158932..159192 (Clytia hemisphaerica)
CGGAATGATAAGAATGGGCAGCgtgaatttcaaatcaaatggaTAGGGTA
TGCGGAAAAAACTTGGGTGGATGAAGGCTCACTTGACCAGCACGTGATTA
ATAACTATCTTAGTTCCTTGTAATTATGTTGTTAATATActaacttttta
ctttttatgagTCTTCTTCATTTATCGCTTTgtcatttttcatatttgtc
ACGTATACCAGGTGTCCTGAAAAAAGTTACTGTGCTGAAATTTGCTATCA
TGTGAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014427XLOC_014427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025694-exon-sc0000542-1491911889:158932..159192TCONS_00025694-exon-sc0000542-1491911889:158932..159192Clytia hemisphaericaexon
TCONS_00025694-exon-sc0000542-1510915933:158932..159192TCONS_00025694-exon-sc0000542-1510915933:158932..159192Clytia hemisphaericaexon
TCONS_00025694-exon-sc0000542-1575043694:158932..159192TCONS_00025694-exon-sc0000542-1575043694:158932..159192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:158932..159192 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.716296	4.78015	4.1345	4.15675	5.4481	0.604324	1.34991	2.65681	1.72262	1.29017	5.42938	1.46872	0.39404	3.1485	1.77088	0	0.7193	3.75121	5.48913	0	0.674056	1.38852	4.9569	0	0.946271	0	0.731236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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