TCONS_00025733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025733
Unique NameTCONS_00025733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025733 ID=TCONS_00025733|Name=TCONS_00025733|organism=Clytia hemisphaerica|type=transcript|length=2448bp
AACAATTTCACTTGTGTGTGCATTGAGTAGGGCTGCAAGCAGTTCAGCAC
GTGGTTGAGAGGTTCCTTCTGGTACCAATTTGGAACGAGAGAAAACCAAT
TAACTTGAGTATGAACCACATTGCCTTTTGAAACGAGCGTAGATAGATAC
ACATATCAAAGATTTGCTAGCATCAGTGAAGTCAACAGTGGTGAGGTCGA
GGTTTGTTGCATCTTCTGGGACGATGGTTCTGTTGAATCTGAGTGAGTTG
AGCTCTTCCATCATCTCAAAGTTACTGATCCAAAGTGGGTGAAGGTCGTC
TGGGATTTGATCATCCCAATCCAGCTTTCTTGTGACGAGTTGGTGTAAGT
CAAGCTTCAGTGATGCAGTGATCGGACAGAGTAATCCAAGTAGATCAAAA
ATTTCACCAGTGCGTGATACACAATGCCTTCGGGTGAGCTTGTCTGGAAT
CTGATTGAGACGTAATCTTGATTTCTTACCCCTCTTTTTGGCTGAGAAAT
TCATTGGAGGAATATGGATGGATAGCTGATCTTcctttggccaccatttc
aatCCAGCCACAAAGACTGAGCTGCCATCGTCACTCATTGATGTTGGTGG
GTCTTCACCTGAAATGACAACTCCTTTGAGCATGAATCCTCTTCCGTTGC
TGATCGTTTCCAATTCCTGTGTNACTCCTTTGAGCATGAATCCTCCTCCG
TTGCTGATTGTTTCCAATTCCTGTGTACGCTGAATGGCGAGTTTCTTGGA
CGACTCACCGCTGACACAATCGTCCACATACATATCATTGTGGACAATTT
CAGCAGCTTCTGGAAACTAGTTTGATGATAATTTTGCGACTTCTCGGAGT
GCATATTCCGCTTGGTTGCCGCTTGATCGTACTCCATATATTAAGGTCTT
CATTACCTTTTGTTTTGGACGTTCGTCAAAAGATAAATTTTCTTGCCATA
GGTAGCGTTGGTATTGCCAGTGGCTAACATCCAATTGAATCGTGTTATAC
ATTTTGCGAACATCTGTTGTGAATGCAGAAGCATGGATCCTCCAGCGAAG
AGCAATGTCTTGTAATCGGTTCAAAATGTTGATGCCCTTTGCTAAGATGT
CATTCAGTGAATTGCCAGTTGGAGTTGGACTTGATGCGTCAAACACAACT
CGACAAGGAGTGCTGACAGAGTTTGGTTTCCATACTGCTCTCCAAGGTAT
AAAGTAATGAAGTTGATTTGACAATGAGTGTTGGACTGATTCTGGGAGAT
TTTCGACATAATCTACATACCCAAGGTCTTGCATCTTCTTTTCGGATAGG
ATGATGTCTTGTTTGTCGGTTAAGTTTTCTGCCTTGTTTAGCTTTCGAAG
TTGTTGATAGTAGATTTTGAGCGCTTTGTCTTCGTTTGACGATAGCTTGA
TTGATGGCTCGTGGATGAACGGCAGTTTGGCGGTAACAATCTGTATTGAT
AGTGATGgatttcttgataagatcttgcTCCACTTCCTCTTTGATGCTGA
TGTCTTCGATATGGCTCTTACATGCCTCGCAATCACGACATGTGACACAT
CTGTAAGTAATTTCTGATCCAACGTTCTCTGAAGCTTCAAAGCTCTTCAT
TGAGTTGATATGGAAGCATGACGTATCAAAGGCGACCAATGATTGGTAAC
TGAGATTTGATTTGAATGTCGAAGTGTTGGATTGTCCAAAATGTTGTTTG
TGACTTTCAGCAAATGACTGATGTGGTCCCCCAATGATGCCGAGACTGCC
GTCAGCACCCTTGAAGACTGATTCAAATATTGATAGACCATTTGCCATTC
CGAAGATGATGTGTGAGTGAAATTTAAAATACTTCATACCTATCATCATG
TCAACATCACCTCCAACTGATTTCGGAAGTCTGGGTAGGTATGATGGATT
TTCATGGAATGCTTGACGAATTGTTGATTCCGCTTCGCCAAGTTGATACG
TAGGGAACGTTTGCGTCAGTTTGTCGAGACAAACTCCTGTCATTGTTGCG
AGCTGACCATTTGCAAGTGGGATGTTGACTGTATAGACGCCATGGTTGGA
TGATGTTGTTGCTCCTCCGATACCACTGATCTGAAAACTTCCATCACCAA
CCTTGGTTGCGTGTCGTCCAAGTCTTTCGACAGCATCTTTCGTGATTACA
AAATCGCTGCAGCCATTATCGAAGAAGATGGTAAAGGTTTGATTGTTGAC
AGTGATTTGTTGAAGTAGATAAATACCAACCACGCTTGGCTGCTCGGCGC
CATTGGCTGTGAAGAATGATAGTTGAATGTCACGTGAGAAGATTTGTAGT
GAAGGATTCCGGTTAATGAATCTGGATTTGCACTTGTTGAGAAGCTCTTC
GTTTTCTTGTGTTGCTTTGTGCTCCTCGCATACAAGCACATGGTGTTTCA
CGGTATATTGTTGATGAGATGGATGTTTGCATATGAAGTCATGTTGGC
Run BLAST on NCBI

transcript from alignment at sc0000544:137719..140218-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025733 ID=TCONS_00025733|Name=TCONS_00025733|organism=Clytia hemisphaerica|type=transcript|length=2500bp|location=Sequence derived from alignment at sc0000544:137719..140218- (Clytia hemisphaerica)
AACAATTTCACTTGTGTGTGCATTGAGTAGGGCTGCAAGCAGTTCAGCAC
GTGGTTGAGAGGTTCCTTCTGGTACCAATTTGGAACGAGAGAAAACCAAT
TAACTTGAGTATGAACCACATTGCCTTTTGAAACGAGCGTAGATAGATAC
ACATATCAAAGATTTGCTAGCATCAGTGAAGTCAACAGTGGTGAGGTCGA
GGTTTGTTGCATCTTCTGGGACGATGGTTCTGTTGAATCTGAGTGAGTTG
AGCTCTTCCATCATCTCAAAGTTACTGATCCAAAGTGGGTGAAGGTCGTC
TGGGATTTGATCATCCCAATCCAGCTTTCTTGTGACGAGTTGGTGTAAGT
CAAGCTTCAGTGATGCAGTGATCGGACAGAGTAATCCAAGTAGATCAAAA
ATTTCACCAGTGCGTGATACACAATGCCTTCGGGTGAGCTTGTCTGGAAT
CTGATTGAGACGTAATCTTGATTTCTTACCCCTCTTTTTGGCTGAGAAAT
TCATTGGAGGAATATGGATGGATAGCTGATCTTCCTTTGGCCACCATTTC
AATCCAGCCACAAAGACTGAGCTGCCATCGTCACTCATTGATGTTGGTGG
GTCTTCACCTGAAATGACAACTCCTTTGAGCATGAATCCTCTTCCGTTGC
TGATCGTTTCCAATTCCTGTGTNACTCCTTTGAGCATGAATCCTCCTCCG
TTGCTGATTGTTTCCAATTCCTGTGTACGCTGAATGGCGAGTTTCTTGGA
CGACTCACCGCTGACACAATCGTCCACATACATATCATTGTGGACAATTT
CAGCAGCTTCTGGAAACTAGTTTGATGATAATTTTGCGACTTCTCGGAGT
GCATATTCCGCTTGGTTGCCGCTTGATCGTACTCCATATATTAAGGTCTT
CATTACCTTTTGTTTTGGACGTTCGTCAAAAGATAAATTTTCTTGCCATA
GGTAGCGTTGGTATTGCCAGTGGCTAACATCCAATTGAATCGTGTTATAC
ATTTTGCGAACATCTGTTGTGAATGCAGAAGCATGGATCCTCCAGCGAAG
AGCAATGTCTTGTAATCGGTTCAAAATGTTGATGCCCTTTGCTAAGATGT
CATTCAGTGAATTGCCAGTTGGAGTTGGACTTGATGCGTCAAACACAACT
CGACAAGGAGTGCTGACAGAGTTTGGTTTCCATACTGCTCTCCAAGGTAT
AAAGTAATGAAGTTGATTTGACAATGAGTGTTGGACTGATTCTGGGAGAT
TTTCGACATAATCTACATACCCAAGGTCTTGCATCTTCTTTTCGGATAGG
ATGATGTCTTGTTTGTCGGTTAAGTTTTCTGCCTTGTTTAGCTTTCGAAG
TTGTTGATAGTAGATTTTGAGCGCTTTGTCTTCGTTTGACGATAGCTTGA
TTGATGGCTCGTGGATGAACGGCAGTTTGGCGGTAACAATCTGTATTGAT
AGTGATGGATTTCTTGATAAGATCTTGCTCCACTTCCTCTTTGATGCTGA
TGTCTTCGATATGGCTCTTACATGCCTCGCAATCACGACATGTGACACAT
CTGTAAGTAATTTCTGATCCAACGTTCTCTGAAGCTTCAAAGCTCTTCAT
TGAGTTGATATGGAAGCATGACGTATCAAAGGCGACCAATGATTGGTAAC
TGAGATTTGATTTGAATGTCGAAGTGTTGGATTGTCCAAAATGTTGTTTG
TGACTTTCAGCAAATGACTGATGTGGTCCCCCAATGATGCCGAGACTGCC
GTCAGCACCCTTGAAGACTGATTCAAATATTGATAGACCATTTGCCATTC
CGAAGATGATGTGTGAGTGAAATTTAAAATACTTCATACCTATCATCATG
TCAACATCACCTCCAACTGATTTCGGAAGTCTGGGTAGGTATGACTGATT
TTCATGGAATGCTTGACGAATTGTTGATTCCANTGGGTAGGTATGATGGA
TTTTCATGGAATGCTTGACGAATTGTTGATTCCGCTTCGCCAAGTTGATA
CGTAGGGAACGTTTGCGTCAGTTTGTCGAGACAAACTCCTGTCATTGTTG
CGAGCTGACCATTTGCAAGTGGGATGTTGACTGTATAGACGCCATGGTTG
GATGATGTTGTTGCTCCTCCGATACCACTGATCTGAAAACTTCCATCACC
AACCTTGGTTGCGTGTCGTCCAAGTCTTTCGACAGCATCTTTCGTGATTA
CAAAATCGCTGCAGCCATTATCGAAGAAGATGGTAAAGGTTTGATTGTTG
ACAGTGATTTGTTGAAGTAGATAAATACCAACCACGCTTGGCTGCTCGGC
GCCATTGGCTGTGAAGAATGATAGTTGAATGTCACGTGAGAAGATTTGTA
GTGAAGGATTCCGGTTAATGAATCTGGATTTGCACTTGTTGAGAAGCTCT
TCGTTTTCTTGTGTTGCTTTGTGCTCCTCGCATACAAGCACATGGTGTTT
CACGGTATATTGTTGATGAGATGGATGTTTGCATATGAAGTCATGTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014449XLOC_014449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025733-exon-sc0000544-1575043694:138331..140218TCONS_00025733-exon-sc0000544-1575043694:138331..140218Clytia hemisphaericaexon
TCONS_00025733-exon-sc0000544-1575043694:137719..138278TCONS_00025733-exon-sc0000544-1575043694:137719..138278Clytia hemisphaericaexon
TCONS_00025733-exon-sc0000544-1510915933:138331..140218TCONS_00025733-exon-sc0000544-1510915933:138331..140218Clytia hemisphaericaexon
TCONS_00025733-exon-sc0000544-1510915933:137719..138278TCONS_00025733-exon-sc0000544-1510915933:137719..138278Clytia hemisphaericaexon
TCONS_00025733-exon-sc0000544-1491911889:138331..140218TCONS_00025733-exon-sc0000544-1491911889:138331..140218Clytia hemisphaericaexon
TCONS_00025733-exon-sc0000544-1491911889:137719..138278TCONS_00025733-exon-sc0000544-1491911889:137719..138278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:137719..140218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.950562	1.17357	1.02932	0.980914	0.969993	0.536217	0.813571	0.805406	0.410772	0.632503	0.774683	0.778271	0.486813	0.951285	0.454986	0.733075	0.74657	0.625332	0.508006	0.444407	0.556257	0.598297	0.27146	0.47504	1.12462	1.19658	0.438891	0.211682	0.353503	0.187026
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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