TCONS_00025735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025735
Unique NameTCONS_00025735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025735 ID=TCONS_00025735|Name=TCONS_00025735|organism=Clytia hemisphaerica|type=transcript|length=818bp
aaaaatttattatttaagCTCAAAACAGCAGCAAGGCAGAACAAACCAAC
CCGAAAACTcaagaatttattattttaagctTATTAAAACAGCAACAAGA
CAGAACAAACCAACccaaaaaatattaaactaaaaaaagttaaaatctaT
AAGCGGGATAAAAAGGTAACTTACTGGCGAGAAAACAGGAAGATGAGCAG
GAAAAGGTACCGGATACATTGGTTGTTGGTAATTGAAAATGCcagtttga
aaaaatggatGTTGTTGCTGTTGGAAGGATGGTAAGCTTTGACAGATGGT
TGGAGGTTGAAGGTTGAAGGTGGAAGGTTGATTGGTTGGAAAACTATTTA
CAAGGGTACGTCGGGCTGGGTAATGGCGGTGTAACGATGCTTTGTTCTGC
TTTGCTGCTGTAGGGTTTTTGTAAGGTTTTTGGTTTtgcttgaaattttt
ctttttccagcttttacaatttttgtttgttttattgttctTTGTTTCTG
TGTCCTTCTTTTTGTCCTTGTCTGTTGTTTTGTTCTTTGTTTTGTAAGTG
TCTTTGTTATCCTCAATGTCCATACtcacttctttttcttttaggttTGA
CAGGCTCAATTTGTCCAGTAAATCCtggtttgtttgttttaaaactgCAA
TTTCTTGTgcgtaaagttttttttgtttgttctgTCGGTGTCTTCGTTGC
cggttttttctgtttttgcctCTTTTTTTTCGTCCAAAATAAGGCGGGCA
TCATTATTTGCCAACTCAAGGTCAAAAGCACAATCTTTGTAATACAATTC
gagcattttatttttttt
Run BLAST on NCBI

protein sequence of TCONS_00025735-protein

>TCONS_00025735-protein ID=TCONS_00025735-protein|Name=TCONS_00025735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MDIEDNKDTYKTKNKTTDKDKKKDTETKNNKTNKNCKSWKKKNFKQNQKP
YKNPTAAKQNKASLHRHYPARRTLVNSFPTNQPSTFNLQPPTICQSLPSF
QQQQHPFFQTGIFNYQQPMYPVPFPAHLPVFSPVSYLFIPLIDFNFF
Run BLAST on NCBI

transcript from alignment at sc0000544:194..1011

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025735 ID=TCONS_00025735|Name=TCONS_00025735|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at sc0000544:194..1011 (Clytia hemisphaerica)
aaaaaaaataaaatgctcGAATTGTATTACAAAGATTGTGCTTTTGACCT
TGAGTTGGCAAATAATGATGCCCGCCTTATTTTGGACGAAAAAAAAGagg
caaaaacagaaaaaaccgGCAACGAAGACACCGAcagaacaaacaaaaaa
aactttacgcACAAGAAATTGcagttttaaaacaaacaaaccaGGATTTA
CTGGACAAATTGAGCCTGTCAaacctaaaagaaaaagaagtgaGTATGGA
CATTGAGGATAACAAAGACACTTACAAAACAAAGAACAAAACAACAGACA
AGGACAAAAAGAAGGACACAGAAACAAagaacaataaaacaaacaaaaat
tgtaaaagctggaaaaagaaaaatttcaagcaAAACCAAAAACCTTACAA
AAACCCTACAGCAGCAAAGCAGAACAAAGCATCGTTACACCGCCATTACC
CAGCCCGACGTACCCTTGTAAATAGTTTTCCAACCAATCAACCTTCCACC
TTCAACCTTCAACCTCCAACCATCTGTCAAAGCTTACCATCCTTCCAACA
GCAACAACatccattttttcaaactgGCATTTTCAATTACCAACAACCAA
TGTATCCGGTACCTTTTCCTGCTCATCTTCCTGTTTTCTCGCCAGTAAGT
TACCTTTTTATCCCGCTTAtagattttaactttttttagtttaatatttt
ttggGTTGGTTTGTTCTGTCTTGTTGCTGTTTTAATAagcttaaaataat
aaattcttgAGTTTTCGGGTTGGTTTGTTCTGCCTTGCTGCTGTTTTGAG
cttaaataataaattttt

Coding sequence (CDS) from alignment at sc0000544:194..1011

>TCONS_00025735 ID=TCONS_00025735|Name=TCONS_00025735|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000544:194..1011 (Clytia hemisphaerica)
ATGGACATTGAGGATAACAAAGACACTTACAAAACAAAGAACAAAACAAC
AGACAAGGACAAAAAGAAGGACACAGAAACAAagaacaataaaacaaaca
aaaattgtaaaagctggaaaaagaaaaatttcaagcaAAACCAAAAACCT
TACAAAAACCCTACAGCAGCAAAGCAGAACAAAGCATCGTTACACCGCCA
TTACCCAGCCCGACGTACCCTTGTAAATAGTTTTCCAACCAATCAACCTT
CCACCTTCAACCTTCAACCTCCAACCATCTGTCAAAGCTTACCATCCTTC
CAACAGCAACAACatccattttttcaaactgGCATTTTCAATTACCAACA
ACCAATGTATCCGGTACCTTTTCCTGCTCATCTTCCTGTTTTCTCGCCAG
TAAGTTACCTTTTTATCCCGCTTAtagattttaactttttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014451XLOC_014451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025735-proteinTCONS_00025735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025735-exon-sc0000544-1491911889:194..1011TCONS_00025735-exon-sc0000544-1491911889:194..1011Clytia hemisphaericaexon
TCONS_00025735-exon-sc0000544-1510915933:194..1011TCONS_00025735-exon-sc0000544-1510915933:194..1011Clytia hemisphaericaexon
TCONS_00025735-exon-sc0000544-1575043694:194..1011TCONS_00025735-exon-sc0000544-1575043694:194..1011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:194..1011 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229632	0.260096	0	0.353078	0.192706	0.278497	0	0.478965	0.564329	0.300091	0.643809	0.507706	0.670056	0.145495	0.723624	0.418078	0.526024	0.734115	0.699978	0.547513	0.62085	0.644991	0.754397	0.889201	0.175435	0.251591	1.10798	0.926144	1.17779	1.29669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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