TCONS_00025820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025820
Unique NameTCONS_00025820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025820 ID=TCONS_00025820|Name=TCONS_00025820|organism=Clytia hemisphaerica|type=transcript|length=1347bp
AATTTGCACTCAATGCTGAGAAGGAGTACCAGATATACAAAGGTCCGAAT
CTTGCTTTGAGTAGACCAACATATCAATCAAGCAACAATCGATGGGATGC
GGAACTAAGTTTTTTGGCAGTAGATGGCAAATATAAACAGTGTGAAGAGC
GAGATGATGGAATCTCAATGACTGGTTACGGTCATGGACAATCTTGGAGG
GTGATACTTGACGATGTTTACAAAATGACTTCTGTACTTCTCTACAATAT
TATCGACTACCGCAGTTCTAAAGAATTATCAAATGTCAATATCTATGTGG
AAGATGTCGGTGGTAAAAGTCATCTCTGTGCAAACACAGGTAATATGAAC
AGGGTCTACATCAAAGAGTTTAAATGTAAAGCTGGAGCCGTTGGTAATGT
TGTGACACTTCGTAAACAAGCTTCCGGTGGCATACGTTTGTGTGAAGTTG
TTGTTTACGGAGAGAAAGtggAGCGAGGACAGGCTCAAAATCTTGCTTTG
CATCGTCCAACAACTCAATCAAGCACTTTGAGACATCATGCAAGCGGTCA
TGCTGTAGATGGTCAAAAAGCCACATGCTCACTTTCTCAAAACACGTGTT
CCAAAACAGACATCACGTGGCATGGTAGAAAAACGTGGTGGGAGGTCTCT
TTAGATAATTCCTACCATATTGATCACGTGGTCATCTATGGATGTGGCAG
TTCATTGGCGgatattgttattttctctATCGAAGAAGAGGAAGGTTTTG
ATTTCAACAGAGACCGTGGAAGACAACCACGAGATTATTATGGAGGGGAG
ACGCGTCCTAATAGTGTACAACAAACCGTttcaatttgtaaaaatgtcgt
TAATGTTAATGATTCGCTCAATGTTCACAATTTCAAGTGTGATGCGCCAG
CTTTTGGGAATATTCTCCGGATTGAGAAGAAGCACTACGGAAATTATGAT
GAAAAATTGCAATTGTGTGAAGTGGAAGTCTATGGTCACGAATTTTTAAG
TTACGCTGCTGGGAAGGAGAATCTAGCTTATCGTGGAGATACGAAGCAAT
CGAGCTACTATGATGGATCACACTGGTCAAGTAAATACGACAGTTCACAT
GCCGCCAATGGTAATAAAATGAATTGTCGACTTCCACAAAACACTTTGAG
TGTAATTGGTGCAAGACGTTACCGTGACAGTTGGTGGCAAGTTCGTTTAC
ATGCGCTCTCTAAAGTCGAAAGTGTCATCATTTACAATCGCGAAGATTGC
TGTAGTCAGTGGCGGCCTgacagggggtgcagggtgtgcagtgcaccacc
cagaaagatctgagaggggcgccaaaagagctttttaagggggcgcc
Run BLAST on NCBI

transcript from alignment at sc0000549:55782..59946+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025820 ID=TCONS_00025820|Name=TCONS_00025820|organism=Clytia hemisphaerica|type=transcript|length=4165bp|location=Sequence derived from alignment at sc0000549:55782..59946+ (Clytia hemisphaerica)
AATTTGCACTCAATGCTGAGAAGGAGTACCAGATATACAAAGGTATTAAT
AATCTTTGATAAAATTGACCAAGAGTGACCAATTAGGTTTTTCCGTTTTT
ATAGATTCCCTTTCTTAAAGGAACATTAAagtaataaaatgtaaacattg
caagaaccacgtgtcattaaaaagaacaattaaagtcacgtgtccaaaac
aaacgtaaaacaattgaacaatcaaaattagccacaTTTGGCttgatgtt
ttattttgacatgtgacatttgttttgattttgtatccgctgcatacagt
ttgtttacaaatttcgcaagtactgttatgtccctttaagctaAGTAAAC
TATTCTTctgtttaaaattaaaactGCAACGTTGAAAATTATGCTTATTT
GAGATACTCTCAAACGGTTATCCTTTCATACCCACTACCTAATCTCTTAG
AAGATCTAAGAGGGGATTCACTATTTACAAGAATCGTTAAGATTGGGTTA
GAAGTTAAATCTTGAAACAATAACATctattctttattttcaaagaatga
cgcatctctattgtttcaaaTAACCAATGAGtaaagcatcttgtaaaaac
tacATGTCATCTGACTTTCACCCCTCGGAAATAAGTTGCAGTTCACTTTA
ACAATTGTTTTTATACACCCTTGTTTTTACAGGTCCGAATCTTGCTTTGA
GTAGACCAACATATCAATCAAGCAACAATCGATGGGATGCGGAACTAAGT
TTTTTGGCAGTAGATGGCAAATATAAACAGTGTGAAGAGCGAGATGATGG
AATCTCAATGACTGGTTACGGTCATGGACAATCTTGGAGGGTGATACTTG
ACGATGTTTACAAAATGACTTCTGTACTTCTCTACAATATTATCGACTAC
CGCAGTTCTAAAGAATTATCAAATGTCAATATCTATGTGGAAGATGTCGG
TGGTAAAAGTCATCTCTGTGCAAACACAGGTAATATGAACAGGGTCTACA
TCAAAGAGTTTAAATGTAAAGCTGGAGCCGTTGGTAATGTTGTGACACTT
CGTAAACAAGCTTCCGGTGGCATACGTTTGTGTGAAGTTGTTGTTTACGG
AGAGAAAGGTAAGTTTATAATTTTCAATGACTTTCTCTTTTGACAACTCC
TAACTTCATCGCTTTCACCAAACATTAACAACATATCTAAAGACGTATCT
AATCTTGAGACCTGGGTGAGATCtatgtttcaaatatttccccTTCGCTT
CTTAGCCTCTGAAAAACAATTTGAAGGAGAGTGTCGACTATAAAAGAAAT
GAACAAAATTCAGGGCGCATGACGCGCTATATATACTGTAGGGCACTTGA
TGCACGTGACCCCTTAGCAGACTCCCTGTATCCACCACTGCTGACCTATT
TAATAgtaaagaaaatcattttttctttagtggAGCGAGGACAGGCTCAA
AATCTTGCTTTGCATCGTCCAACAACTCAATCAAGCACTTTGAGACATCA
TGCAAGCGGTCATGCTGTAGATGGTCAAAAAGCCACATGCTCACTTTCTC
AAAACACGTGTTCCAAAACAGACATCACGTGGCATGGTAGAAAAACGTGG
TGGGAGGTCTCTTTAGATAATTCCTACCATATTGATCACGTGGTCATCTA
TGGATGTGGCAGTTCATTGGCGgatattgttattttctctATCGAAGAAG
AGGAAGGTTTTGATTTCAACAGAGACCGTGGAAGACAACCACGAGATTAT
TATGGAGGGGAGACGCGTCCTAATAGTGTACAACAAACCGTttcaatttg
taaaaatgtcgtTAATGTTAATGATTCGCTCAATGTTCACAATTTCAAGT
GTGATGCGCCAGCTTTTGGGAATATTCTCCGGATTGAGAAGAAGCACTAC
GGAAATTATGATGAAAAATTNAATATCTATGTGGAAGATGTCGGTGGTAA
AAGTCATCTCTGTGCAAACACAGGTAATATGAACAGGGTCTACATCAAAG
AGTTTAAATGTAAAGCTGGAGCCGTTGGTAATGTTGTGACACTTCGTAAA
CAAGCTTCCGGTGGCATACGTTTGTGTGAAGTTGTTGTTTACGGAGAGAA
AGGTAAGTTTATAATTTTCAATGACTTTCTCTTTTGACAACTCCTAACTT
CATCGCTTTCACCAAACATTAACAACATATCTAAAGACGTATCTAATCTT
GAGACCTGGATGAGATCtatgtttcaaatatttccccTTCGCTTCTTAGC
CTCTGAAAAACAATTTGAAGGAGAGTGTCGACTATAAAAGAAATGAACAA
AATTCAGGGCGCATGACGCGCTATATATACTGTAGGGCACTTGATGCACG
TGACCCCTTAGCAGACTCCCTGTATCCACCACTGCTGACCTATTTAATAg
taaagaaaatcattttttctttagtggAGCGAGGACAGGCTCAAAATCTT
GCTTTGCATCGTCCAACAACTCAATCAAGCACTTTGAGACATCATGCAAG
CGGTCATGCTGTAGATGGTCAAAAAGCCACATGCTCACTTTCTCAAAACA
CGTGTTCCAAAACAGACATCACGTGGCATGGTAGAAAAACGTGGTGGGAG
GTCTCTTTAGATAATTCCTACCATATTGATCACGTGGTCATCTATGGATG
TGGCAGTTCATTGGCGgatattgttattttctctATCGAAGAAGAGGAAG
GTTTTGATTTCAACAGAGACCGTGGAAGACAACCACGAGATTATTATGGA
GGGGAGACGCGTCCTAATAGTGTACAACAAACCGTttcaatttgtaaaaa
tgtcgtTAATGTTAATGATTCGCTCAATGTTCACAATTTCAAGTGTGATG
CGCCAGCTTTTGGGAATATTCTCCGGATTGAGAAGAAGCACTACGGAAAT
TATGATGAAAAATTGCAATTGTGTGAAGTGGAAGTCTATGGTCACGAATG
TAAGTTCTCTTCTCTGATGCATAGCAGGTCCTGGcaatgtaaatttattt
tcatagcAATAAAAATTTTACCTGTCAGGATCTGGTATGAACCTCCGTTC
AACACAtctaaaatcttgaaaattcaaTGTCGATGAATGGGCAACAAGCA
TCAaggttttttatgtttttttaaaaacagcatGAACATGTAGACATCGC
TATTTTTGGGCTTAAACGAAGCGGACTCTGGCTCTGCCCAGGcagtacaa
aatgcataaaactcGAGAAATTAAATTATGAGAAATTAAGGATAAACCtt
gaaaaaatcagccattttgatgacgtcatagacAGAAAAATCAGAATAAC
TTTATGTATAAACAAGCTAAAGGTCTCAAATTTCGACAGCAGTGTCTTTG
AAAGCATTAAACTTTTTGCAGATATCAGCatattttagtcaaaaatgctt
tgattaattttagattttttaatcaTTGACTATCTTATAGTCCAAAACGA
AATCTTTATCCCGAAtaacaaaatgacaaaaagccGATCGATCGAGACAC
TCCACGCGTGAGGAAGTCTTCGTATGTTCCTCACTCTACTACCGCGTAAA
TTTTTCTTCAGCAGCCTTATCTGGCAGTATTACTCAGTTACATAATTTTC
CCGCGATTGGAGTTTTCAATATGGACGATAAATCGTCTAGAGTTAGTCCT
TTACTGGTGGGAACTAGACAAATTTTTGGTTCTTTTTTCCATCGGGTCGA
CAATATAGGGTATTCCAAagtaaattgatttttaaacttttttttccagT
TTTAAGTTACGCTGCTGGGAAGGAGAATCTAGCTTATCGTGGAGATACGA
AGCAATCGAGCTACTATGATGGATCACACTGGTCAAGTAAATACGACAGT
TCACATGCCGTNAGCAATCGAGCTACTATGATGGATCACACTGGTCAAGT
TAATACGACAGTTCACATGCCGCCAATGGTAATAAAATGAATTGTCGACT
TCCACAAAACACTTTGAGTGTAATTGGTGCAAGACGTTACCGTGACAGTT
GGTGGCAAGTTCGTTTACATGCGCTCTCTAAAGTCGAAAGTGTCATCATT
TACAATCGCGAAGATTGCTGTAGTCAGTGGCGGCCTgacagggggtgcag
ggtgtgcagtgcaccacccagaaagatctgagaggggcgccaaaagagct
ttttaagggggcgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014512XLOC_014512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025820-exon-sc0000549-1491911889:55782..55823TCONS_00025820-exon-sc0000549-1491911889:55782..55823Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1510915933:55782..55823TCONS_00025820-exon-sc0000549-1510915933:55782..55823Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1575043694:55782..55823TCONS_00025820-exon-sc0000549-1575043694:55782..55823Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1491911889:56464..56889TCONS_00025820-exon-sc0000549-1491911889:56464..56889Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1510915933:56464..56889TCONS_00025820-exon-sc0000549-1510915933:56464..56889Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1575043694:56464..56889TCONS_00025820-exon-sc0000549-1575043694:56464..56889Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1491911889:58206..58730TCONS_00025820-exon-sc0000549-1491911889:58206..58730Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1510915933:58206..58730TCONS_00025820-exon-sc0000549-1510915933:58206..58730Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1575043694:58206..58730TCONS_00025820-exon-sc0000549-1575043694:58206..58730Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1491911889:59531..59635TCONS_00025820-exon-sc0000549-1491911889:59531..59635Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1510915933:59531..59635TCONS_00025820-exon-sc0000549-1510915933:59531..59635Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1575043694:59531..59635TCONS_00025820-exon-sc0000549-1575043694:59531..59635Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1491911889:59698..59946TCONS_00025820-exon-sc0000549-1491911889:59698..59946Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1510915933:59698..59946TCONS_00025820-exon-sc0000549-1510915933:59698..59946Clytia hemisphaericaexon
TCONS_00025820-exon-sc0000549-1575043694:59698..59946TCONS_00025820-exon-sc0000549-1575043694:59698..59946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:55782..59946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1929	0.875127	0.108929	0.16156	35.7592	18.7731	14.0012	18.5632	10.9079	11.7808	1.48277	5.27557	0.0219161	0.0243617	0.0568582	0.0203131	0.218095	0.0738149	0.0421436	0	0.0362486	0	2.50636	2.4454	0	0.0306498	0	0.193828	0.860314	1.7224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top