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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025822 ID=TCONS_00025822|Name=TCONS_00025822|organism=Clytia hemisphaerica|type=transcript|length=1073bp
cagccattgatctttaatagagagtaaagtaagaccagcggtgcgaaagt
ttaaagattatctggtaatttttctgataagacttttagaaagcaaaaat
atagactaaatcgacttaccaggtataaaatttccatttaaaagattagg
ggcgttactttcaaacagtcactgctcttacagtttaatattttcactta
atgatggagggcgcaaataaggacaaaaataccaggggcgccaatttcat
agtttgcaccaccaagaaatttaagccaggccgctactggcTGTAGTGAT
CAGCTTTCCGATGCAGATATCATGGTAAACTATATCACCAATGAGTATTA
TATGCATATGACGGAAGTTAAGTTTAACGAGACAGGAAACATGGAAAACG
TCAAAGTCAAAGAATTCACATCGAAAGCATCAAGATTTGGCCATATTGTA
CAGATCAAAAAGCAGAAGAGTAATATTCCCTTGTCGTTGTGCGAAGTTGa
agtttacgggaaaaaagTGACAAAGGAAGAGATGAAGAAAATACAAACAG
AAGAAGCATGCGAATTCCTGAAACAACGAGTGAAAGGAAAAACAATCGAT
GATTTTACCCAAAATGTTATTGACATGACATGTCGTGGCTCAACAAATTA
TTTCCTCCCCGGTGAGTTGACAATGTATATAGGTCGAACATAACTGATAT
TTATCATCAGTTAAGCTTTGGAAGCATAATACCTATAGGAAACTAGGATC
ACAAATGCTTGACAAATGCTTTGTATATGAATTATAACTTCTACCAAGCA
CGAACAAAACGTTATTAAAatattgtttcaacgttcaaatATCATACTGA
CTGACGTtattgaaacaatgttgtttgGACGAACAAACGTTCCGTTCCTG
CTAGAGTATTTGTTGAATAATATATACCCGTCACTTGCAAGGGTggtaaa
tttaattttgaatagGATTTTAATCTAGGATATCAATTATTTGTAGTGTC
TTTGGTAATACtgattgaaaataatattataacaattttaacttattttt
gtagcgaagaaaaaatataagct Run BLAST on NCBI protein sequence of TCONS_00025822-protein >TCONS_00025822-protein ID=TCONS_00025822-protein|Name=TCONS_00025822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVNYITNEYYMHMTEVKFNETGNMENVKVKEFTSKASRFGHIVQIKKQKS
NIPLSLCEVEVYGKKVTKEEMKKIQTEEACEFLKQRVKGKTIDDFTQNVI
DMTCRGSTNYFLPGELTMYIGRT Run BLAST on NCBI transcript from alignment at sc0000549:60352..61648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025822 ID=TCONS_00025822|Name=TCONS_00025822|organism=Clytia hemisphaerica|type=transcript|length=1297bp|location=Sequence derived from alignment at sc0000549:60352..61648+ (Clytia hemisphaerica)
cagccattgatctttaatagagagtaaagtaagaccagcggtgcgaaagt
ttaaagattatctggtaatttttctgataagacttttagaaagcaaaaat
atagactaaatcgacttaccaggtataaaatttccatttaaaagattagg
ggcgttactttcaaacagtcactgctcttacagtttaatattttcactta
atgatggagggcgcaaataaggacaaaaataccaggggcgccaatttcat
agtttgcaccaccaagaaatttaagccaggccgctactggcTGTAGTGAT
CAGCTTTCCGATGCAGATATCATGGTAAACTATATCACCAATGAGTATTA
TATGCATATGACGGAAGTTAAGTTTAACGAGACAGGAAACATGGAAAACG
TCAAAGTCAAAGAATTCACATCGAAAGCATCAAGATTTGGCCATATTGTA
CAGATCAAAAAGCAGAAGAGTAATATTCCCTTGTCGTTGTGCGAAGTTGa
agtttacgggaaaaaaggtACCTTACACATACATTCTATATTTGATTGGT
GTTGGTGTCTAGCAATTACTTCCCCCATAggtctttttgacttcaaaacc
tacccccccccctaaaaccAGGGGGAGGACACAATAAAAACTCCACTGTG
AGTACTTTAAAAAACCAAACATTATTCTAGAATATAAAGCActaaattat
ttattattatcaTAATAAAgcatattattttcattttgcagTGACAAAGG
AAGAGATGAAGAAAATACAAACAGAAGAAGCATGCGAATTCCTGAAACAA
CGAGTGAAAGGAAAAACAATCGATGATTTTACCCAAAATGTTATTGACAT
GACATGTCGTGGCTCAACAAATTATTTCCTCCCCGGTGAGTTGACAATGT
ATATAGGTCGAACATAACTGATATTTATCATCAGTTAAGCTTTGGAAGCA
TAATACCTATAGGAAACTAGGATCACAAATGCTTGACAAATGCTTTGTAT
ATGAATTATAACTTCTACCAAGCACGAACAAAACGTTATTAAAatattgt
ttcaacgttcaaatATCATACTGACTGACGTtattgaaacaatgttgttt
gGACGAACAAACGTTCCGTTCCTGCTAGAGTATTTGTTGAATAATATATA
CCCGTCACTTGCAAGGGTggtaaatttaattttgaatagGATTTTAATCT
AGGATATCAATTATTTGTAGTGTCTTTGGTAATACtgattgaaaataata
ttataacaattttaacttatttttgtagcgaagaaaaaatataagct Coding sequence (CDS) from alignment at sc0000549:60352..61648+ >TCONS_00025822 ID=TCONS_00025822|Name=TCONS_00025822|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000549:60352..61648+ (Clytia hemisphaerica)
ATGGTAAACTATATCACCAATGAGTATTATATGCATATGACGGAAGTTAA
GTTTAACGAGACAGGAAACATGGAAAACGTCAAAGTCAAAGAATTCACAT
CGAAAGCATCAAGATTTGGCCATATTGTACAGATCAAAAAGCAGAAGAGT
AATATTCCCTTGTCGTTGTGCGAAGTTGaagtttacgggaaaaaagTGAC
AAAGGAAGAGATGAAGAAAATACAAACAGAAGAAGCATGCGAATTCCTGA
AACAACGAGTGAAAGGAAAAACAATCGATGATTTTACCCAAAATGTTATT
GACATGACATGTCGTGGCTCAACAAATTATTTCCTCCCCGGTGAGTTGAC
AATGTATATAGGTCGAACATAAATGGTAAACTATATCACCAATGAGTATT
ATATGCATATGACGGAAGTTAAGTTTAACGAGACAGGAAACATGGAAAAC
GTCAAAGTCAAAGAATTCACATCGAAAGCATCAAGATTTGGCCATATTGT
ACAGATCAAAAAGCAGAAGAGTAATATTCCCTTGTCGTTGTGCGAAGTTG
aagtttacgggaaaaaagTGACAAAGGAAGAGATGAAGAAAATACAAACA
GAAGAAGCATGCGAATTCCTGAAACAACGAGTGAAAGGAAAAACAATCGA
TGATTTTACCCAAAATGTTATTGACATGACATGTCGTGGCTCAACAAATT
ATTTCCTCCCCGGTGAGTTGACAATGTATATAGGTCGAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025822-exon-sc0000549-1491911889:60352..60868 | TCONS_00025822-exon-sc0000549-1491911889:60352..60868 | Clytia hemisphaerica | exon |
| TCONS_00025822-exon-sc0000549-1510915933:60352..60868 | TCONS_00025822-exon-sc0000549-1510915933:60352..60868 | Clytia hemisphaerica | exon |
| TCONS_00025822-exon-sc0000549-1575043694:60352..60868 | TCONS_00025822-exon-sc0000549-1575043694:60352..60868 | Clytia hemisphaerica | exon |
| TCONS_00025822-exon-sc0000549-1491911889:61093..61648 | TCONS_00025822-exon-sc0000549-1491911889:61093..61648 | Clytia hemisphaerica | exon |
| TCONS_00025822-exon-sc0000549-1510915933:61093..61648 | TCONS_00025822-exon-sc0000549-1510915933:61093..61648 | Clytia hemisphaerica | exon |
| TCONS_00025822-exon-sc0000549-1575043694:61093..61648 | TCONS_00025822-exon-sc0000549-1575043694:61093..61648 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:60352..61648 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008979 | Galactose-bd-like |
Blast
The following BLAST results are available for this feature:
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