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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025829 ID=TCONS_00025829|Name=TCONS_00025829|organism=Clytia hemisphaerica|type=transcript|length=612bp
TTGCATTACTTACTGTGGAAGAACAAGATAGAGACACTTAAAATGTAAAT
CACAGTCGTATAAAAACCGTGAGTACCAGTCAGGAAAAATGCAGTCAGCT
TTCAATAATATATTTTCTATTTGgtctttcaatattttgacaTGTAATAA
AGGCAAGATAAATTATATCAGACTATATCTAAGATACCCtaaatctttca
aaaagcaGCCCAATTTTTTTAATAGTATATTATTTTCCTGGTTAATTGGA
TTAGGCAAAAGCTTTTTGTGTGATCCATTCAGTAACGTATTGCGTACGCG
CGTACACGCCATACGAGCCTTGGCGGGCGCAACCATTACCCCATGAGACA
ACGCCCCATAAAAACCATACGTCTGCATTATTGACACGCTTCTTACACAC
CAATGGGCCACCAGAATCACCTTGGCAAGAATCAATAGGTTTCTTGTCNT
CTTACACACCAATGGGCCACCAGAATCACCTTGGCAAGAATCAACAGCTT
TCTTGTCGTATCCTGCACAGGTCATTCTTGAGGTGATTGGGTAACTCATA
TGACTGAATGCTTGCTCGCAAGTTGATTGGTCAATCAATGGCACTTTCGC
TTGTTGCAAAAT Run BLAST on NCBI transcript from alignment at sc0000549:147083..148107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025829 ID=TCONS_00025829|Name=TCONS_00025829|organism=Clytia hemisphaerica|type=transcript|length=1025bp|location=Sequence derived from alignment at sc0000549:147083..148107+ (Clytia hemisphaerica)
TTGCATTACTTACTGTGGAAGAACAAGATAGAGACACTTAAAATGTAAAT
CACAGTCGTATAAAAACCGTGAGTACCAGTCAGGAAAAATGCAGTCAGCT
TTCAATAATATATTTTCTATTTGgtctttcaatattttgacaTGTAATAA
AGGCAAGATAAATTATATCAGACTATATCTAAGATACCCtaaatctttca
aaaagcaGCCCAATTTTTTTAATAGTATATTATTTTCCTGGTTAATTGGA
TTAGGCAAAAGCTTTTTGTGTGATCCATTCAGTAACGTATTGCGTACGCG
CGTACACGCCATACGAGCCTTGGCGGGCGCAACCATTACCCCATGAGACA
ACGCCCCATAAAAACCATACGTCTGCATTATTGACACGCTTCTTACACAC
CAATGGGCCACCAGAATCACCTTGGCAAGAATCAATAGGTTTCTTGTCNT
CTTACACACCAATGGGCCACCAGAATCACCTTGGCAAGAATCAACAGCTT
TCTTGTCGTATCCTGGAAgattaaatgttttttcgatTTAGTTTCTTCAA
AAATTCCTTCTTTTTGTCCCTTGAAACATGGGAAAAATATTTAGCCTTAA
GATTGCTCAGTCTGTATcaaagctctagtttagacggtccACTTTTCTCC
gagcctattctaattgtgaattaaagttggcAAAAAGTttgctgtctaaa
gtcaatctGTTACCCTCTTTTGACAATGTCGTTTTTCAATccttttcaag
caaagattttaactgctgACTGTCTGCCCcctttctgcctactctaacaa
ttagaataggccaGGGCCGAAAgttggccgtctaaactagagcaaactct
ttttcaattaatttttacaagaacattttCGAATTTACAAGCCCTCACTT
TGTCAATTAGTTTCATATGTCATACCTGCACAGGTCATTCTTGAGGTGAT
TGGGTAACTCATATGACTGAATGCTTGCTCGCAAGTTGATTGGTCAATCA
ATGGCACTTTCGCTTGTTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025829-exon-sc0000549-1491911889:147083..147594 | TCONS_00025829-exon-sc0000549-1491911889:147083..147594 | Clytia hemisphaerica | exon |
| TCONS_00025829-exon-sc0000549-1510915933:147083..147594 | TCONS_00025829-exon-sc0000549-1510915933:147083..147594 | Clytia hemisphaerica | exon |
| TCONS_00025829-exon-sc0000549-1575043694:147083..147594 | TCONS_00025829-exon-sc0000549-1575043694:147083..147594 | Clytia hemisphaerica | exon |
| TCONS_00025829-exon-sc0000549-1491911889:148008..148107 | TCONS_00025829-exon-sc0000549-1491911889:148008..148107 | Clytia hemisphaerica | exon |
| TCONS_00025829-exon-sc0000549-1510915933:148008..148107 | TCONS_00025829-exon-sc0000549-1510915933:148008..148107 | Clytia hemisphaerica | exon |
| TCONS_00025829-exon-sc0000549-1575043694:148008..148107 | TCONS_00025829-exon-sc0000549-1575043694:148008..148107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:147083..148107 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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