|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025830 ID=TCONS_00025830|Name=TCONS_00025830|organism=Clytia hemisphaerica|type=transcript|length=1808bp
tttgaataaagaaaaatttctgcAAAAGTATGAaatattgatgaaaatga
tgttttgttttgaagcacGCATAATAAGCAAGACAGTGTTGCAACCACCT
GAATATAAATAGATTATTAAAAGTCTAAATTTATAGAAAAGATCTTTTGC
AAGACTTATGAATAGTCGACAGAAACTGTTGTTTACAAAAGGGAAAGTTG
CAACACATAAAGTAATAAAATTCCTACTCAGAAAGATCAGTCAAAGGAAA
AGACATTTCTTTGTGTAACATCATTTCATCCACATATTCGACTCCATTTA
AATTGGTTCTTGATCTGAAACGCAGAAAGCAAAATATAAAACCAGTAAGA
GCGCCTCCAGCAAGTAAAACACCAAGGATGATCCATATCATACCAGTACT
CGATCCTGAATCCTTCGGATGAGTTTTAGATTCTATGGGGTGATCATTTT
GATTGTAGATTATACAGTAGACTTCAATTGTGTATTGGTGTTTATAACAA
TATGTAAACATGATGGAAATCTGTGGTTGAATAGCATAATCTCCTACATC
AAGAAGAACTGATCCATTGCCAATATTATATTCTTCCGTAAAATTGAAGA
GTTTGACTAAGACACCATTGACTAAAATTTTCActtgtttcaaatgtttt
gtaAATGTTTTGGGTTGTGAAAAGTGTAGAATCTGGTTTGAATGAAATGA
GCAGTGGTGTTTATGTACAAATTCTAGTTTTGGAATGAGTTTGTaattat
caaaagttataacttgactgcaatttttgtttttattgaatacaaataat
aaatcaattgtttgaacaaaacaaatattgctTATTGGTAGTTGAAAGTA
GGACTCCAATCTgtgtttatttttaaaaatggaatCGTGAACAAATCTAT
TCCTAATATATGTTGACAATTGATAGACATAATGGTCTGCTTGTATGCTT
TTAGAATGAACATCAACTTTGAATCTGCTACCATATAATTCAAACACATT
TGAATGTAATATAAACTCTACATCACCACTGGACGTTATCTGTTCTGGAG
ACTTAACAGTAATCCTATCAAAACAACTGCATTGTTCGTTGACATTGAGT
GCCTTTAAAGAATAATTAGTTCCAGACGTGCTGCTGTTATTCAACAACAG
AAAAGCACTGTTCATAAAACGTTTTTCAATACTacacataaaatatttct
tcccaTAAATATGACAAGATTTAACTTTGGTCAGTCCATTGTTATTGATC
ATGAAAGTTACATCACCTGAGCTAATACCATTCAAAACTATTATGTCATC
TTTGGAAGAACAATAGCCAAGATATCCAACAATTTGTGGAATGAGGAAAG
CCATATTGACACATAACCAAAATAGACAGTTTTTCATTACTCATTTTGTC
CAACAAGATTCAGGATTAATCATGcaataaaattattataaatGTGTTGC
AcattttattattaatttttctgttattttgataaagCTTTGGTTATTTT
AAAAAGTAGAGTTTAGAACTTCTCCTAATCATGATGTCATATTGGGAAGT
CAATGGTCAAAACGACACTCTTCAAGAGTCTCAATATTGGACAGGATGTG
TAGCGGATGAGAGTGGACTCCCAATGAACGTTGGACAGTGAACCTCAAAG
AGCGACAGAGGACTGACATCTCCGGAAGAATGGCAAACAGCAGACATGAC
ACAGACAATGACACTGGCTCCCCAATCGAAACAAAGATGGATGTGAAGGA
TTTAGGAGTCACTCTGGATCTGAACATGACATACAGCAAACATATCACAA
ACCAGTTC Run BLAST on NCBI transcript from alignment at sc0000549:171098..173828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025830 ID=TCONS_00025830|Name=TCONS_00025830|organism=Clytia hemisphaerica|type=transcript|length=2731bp|location=Sequence derived from alignment at sc0000549:171098..173828+ (Clytia hemisphaerica)
tttgaataaagaaaaatttctgcAAAAGTATGAaatattgatgaaaatga
tgttttgttttgaagcacGCATAATAAGCAAGACAGTGTTGCAACCACCT
GAATATAAATAGATTATTAAAAGTCTAAATTTATAGAAAAGATCTTTTGC
AAGACTTATGAATAGTCGACAGAAACTGTTGTTTACAAAAGGGAAAGTTG
CAACACATAAAGTAATAAAATTCCTACTCAGAAAGATCAGTCAAAGGAAA
AGACATTTCTTTGTGTAACATCATTTCATCCACATATTCGACTCCATTTA
AATTGGTTCTTGATCTGAAACGCAGAAAGCAAAATATAAAACCAGTAAGA
GCGCCTCCAGCAAGTAAAACACCAAGGATGATCCATATCATACCAGTACT
CGATCCTGAATCCTTCGGATGAGTTTTAGATTCTATGGGGTGATCATTTT
GATTGTAGATTATACAGTAGACTTCAATTGTGTATTGGTGTTTATAACAA
TATGTAAACATGATGGAAATCTGTGGTTGAATAGCATAATCTCCTACATC
AAGAAGAACTGATCCATTGCCAATATTATATTCTTCCGTAAAATTGAAGA
GTTTGACTAAGACACCATTGACTAAAATTTTCActtgtttcaaatgtttt
gtaAATGTTTTGGGTTGTGAAAAGTGTAGAATCTGGTTTGAATGAAATGA
GCAGTGGTGTTTATGTACAAATTCTAGTTTTGGAATGAGTTTGTaattat
caaaagttataacttgactgcaatttttgtttttattgaatacaaataat
aaatcaattgtttgaacaaaacaaatattgctTATTGGTAGTTGAAAGTA
GGACTCCAATCTgtgtttatttttaaaaatggaatCGTGAACAAATCTAT
TCCTAATATATGTTGACAATTGATAGACATAATGGTCTGCTTGTATGCTT
TTAGAATGAACATCAACTTTGAATCTGCTACCATATAATTCAAACACATT
TGAATGTAATATAAACTCTACATCACCACTGGACGTTATCTGTTCTGGAG
ACTTAACAGTAATCCTATCAAAACAACTGCATTGTTCGTTGACATTGAGT
GCCTTTAAAGAATAATTAGTTCCAGACGTGCTGCTGTTATTCAACAACAG
AAAAGCACTGTTCATAAAACGTTTTTCAATACTacacataaaatatttct
tcccaTAAATATGACAAGATTTAACTTTGGTCAGTCCATTGTTATTGATC
ATGAAAGTTACATCACCTGAGCTAATACCATTCAAAACTATTATGTCATC
TTTGGAAGAACAATAGCCAAGATATCCAACAATTTGTGGAATGAGGAAAG
CCATATTGACACATAACCAAAATAGACAGTTTTTCATTACTCATTTTGTC
CAACAAGATTCAGGATTAATCATGcaataaaattattataaatGTGTTGC
AcattttattattaatttttctgttattttgataaagCTTTGGTTATTTT
AAAAAGTAGAGTTTAGAACTTCTCCTAATCATGATGTCATATTGGGAAGT
CAATGGTCAAAACGACACTCTTCAAGAGTCTCAATATTGGACAGGATGTG
TAGCGGATGAGAGTGGACTCCCAATGAACGTTGGACAGTGAACCTCAAAG
AGCGACAGAGGACTGACATCTCCGGAAGAATGGCAAACAGCAGACATGAC
ACAGACAATGGTAACTGAAAGTCACCACGCTTATTATTTTTAATTGAATC
AAAATAGGGGGACAAAAGTTCAATGCACAGCTCTAAAATTAAGTCCCCAT
AATGTTTTTGTGGAAGCAGGCAAAGAGGCACTTATTtcataaattcaaaa
taattctgaTCTGTTTCTTCTGACACGCTATTAAGCTTGTAAGGTCTGGA
AAGTTTTTAACAACTGAACAGTTTGGAATTTTTCCTGGCTATGTTTTAGA
TTTTACAGCAGCAGGAGGGCTCCTAAACCTCATCCTTAGTGAAGCTTTAG
CATTGGCTGCCACCCAATTACGAAGCTGTGATAGATATGGGGATGGATAT
GATAATCAAATCCATCAGAATATAAACAAAGTAGTTGAACACTACTTAAG
ATAGTCcagtattttctcaaattcctccACCACCTGCaggtttcaaattt
tgcttGTGGGCAAAATTTATAAATCTTCAGATATTGAAAGCTCAAATTTA
GTGTCCTGGGggtttcagattttttgccATGCAggtaatttataaatctt
tagttATCGAAACCTTAAATCGCACCGCCTGGGGGTTTTAAATTCTGCCA
CCTGtcagtttcaaatttttcctgcaaGTAAATTATACCGTTATATTGGG
GTAACTTGCACCATTAGATCAGGGTAACTTGCACCATTAGATCAGGGTAA
CTTGCACCATTAGAttggggtaacttgcatcaaagTGGAggttaacatgc
atagccctcaaatgaatgacctggccggttattaaaatacaaatttaaat
caaattaaAGCAAATCTGATTTACATTTAAGTTTATGGATTGCAAAATGT
ATAATATCTCCCAATCATAGTTTGAACATCTTAATACACACAAAAAAATA
ACGAACTAAAAGAATACTCAAATTACCTCTCAGACACTGGCTCCCCAATC
GAAACAAAGATGGATGTGAAGGATTTAGGAGTCACTCTGGATCTGAACAT
GACATACAGCAAACATATCACAAACCAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025830-exon-sc0000549-1491911889:171098..172807 | TCONS_00025830-exon-sc0000549-1491911889:171098..172807 | Clytia hemisphaerica | exon |
| TCONS_00025830-exon-sc0000549-1510915933:171098..172807 | TCONS_00025830-exon-sc0000549-1510915933:171098..172807 | Clytia hemisphaerica | exon |
| TCONS_00025830-exon-sc0000549-1575043694:171098..172807 | TCONS_00025830-exon-sc0000549-1575043694:171098..172807 | Clytia hemisphaerica | exon |
| TCONS_00025830-exon-sc0000549-1491911889:173731..173828 | TCONS_00025830-exon-sc0000549-1491911889:173731..173828 | Clytia hemisphaerica | exon |
| TCONS_00025830-exon-sc0000549-1510915933:173731..173828 | TCONS_00025830-exon-sc0000549-1510915933:173731..173828 | Clytia hemisphaerica | exon |
| TCONS_00025830-exon-sc0000549-1575043694:173731..173828 | TCONS_00025830-exon-sc0000549-1575043694:173731..173828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:171098..173828 + |
Blast
The following BLAST results are available for this feature:
|
