TCONS_00025851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025851
Unique NameTCONS_00025851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025851 ID=TCONS_00025851|Name=TCONS_00025851|organism=Clytia hemisphaerica|type=transcript|length=437bp
GGAGTTGTcgaatttcataagaataaagAGTCCAAGTCTCACTCCCGTAC
AGAAGAATTGGTAGTAAGCATTGCTTATAGACTGCGATTTTAGTCGAGAT
TGTCAAATCGTGATTATCAAAGACTCTGTGTCTAATAAGCCTACCAAAAG
CACTGGATGTTGCTTGGATGCGTGAAGTGAGTTCGACTTGAAGTTTACAA
TCTTTGGTGAAAAAACTGCCAAGGTACTTGAAACGATCGAAATTTTGTAA
GGGGACTTCATCGACGTAGAAGATTGCTTCTGGACCCATACATAGAACTT
CAGTTTTTCCTGCATTGATCTTTAATCCAAAACGTTTGGATGCAGCATTG
TAAGCATCGAGCAGTTCTTGTAGACCTTCGGCCGCGAGTCGCTTAGCACT
GCGATGTCATCTGCATATTGTGCCTCACGAATAAATT
Run BLAST on NCBI

transcript from alignment at sc0000549:43639..44075

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025851 ID=TCONS_00025851|Name=TCONS_00025851|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0000549:43639..44075 (Clytia hemisphaerica)
AATTTATTCGTGAGGCACAATATGCAGATGACATCGCAGTGCTAAGCGAC
TCGCGGCCGAAGGTCTACAAGAACTGCTCGATGCTTACAATGCTGCATCC
AAACGTTTTGGATTAAAGATCAATGCAGGAAAAACTGAAGTTCTATGTAT
GGGTCCAGAAGCAATCTTCTACGTCGATGAAGTCCCCTTACAAAATTTCG
ATCGTTTCAAGTACCTTGGCAGTTTTTTCACCAAAGATTGTAAACTTCAA
GTCGAACTCACTTCACGCATCCAAGCAACATCCAGTGCTTTTGGTAGGCT
TATTAGACACAGAGTCTTTGATAATCACGATTTGACAATCTCGACTAAAA
TCGCAGTCTATAAGCAATGCTTACTACCAATTCTTCTGTACGGGAGTGAG
ACTTGGACTctttattcttatgaaattcgACAACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014532XLOC_014532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025851-exon-sc0000549-1491911889:43639..44075TCONS_00025851-exon-sc0000549-1491911889:43639..44075Clytia hemisphaericaexon
TCONS_00025851-exon-sc0000549-1510915933:43639..44075TCONS_00025851-exon-sc0000549-1510915933:43639..44075Clytia hemisphaericaexon
TCONS_00025851-exon-sc0000549-1575043694:43639..44075TCONS_00025851-exon-sc0000549-1575043694:43639..44075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:43639..44075 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622417	0	0.40227	0.68947	0	0.497457	0	0.374576	0.469413	0.324838	0.59922	0.74922	0.206975	0.125765	0.952427	1.11813	1.20022	2.05049	2.15034	2.63416	1.20358	0.660445	0.356825	1.13542	0	0.149102	1.06682	0.683124	4.542	3.92173
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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