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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025863 ID=TCONS_00025863|Name=TCONS_00025863|organism=Clytia hemisphaerica|type=transcript|length=1153bp
TTCATTTCATAGGATTAAAATAGCAAGTGTGATGAAAgtacaatttgatt
ttttgttattattcaAGAATTGTCCTTTCATTTTTGCCTtttgagtttga
aaaaaaaaaatttttctctcaaataTTATTGGAAGAATCATTTGCTTTGA
ATGtctgttaaaaattttttgagtttCGGCTAAGGAAAGTCCTACAATGC
ACCTATATATTTTACTGAGCAAATTGGTTTTGGTTTATTCCCAATGGTAT
ATTGGCAAAGAAAAACAACATTACACATCAAGTGTTGACGATACTTCGAA
ACCTGTTGTTGCAACCTCACCTATTGAATGTGCTCTGAAATGTCAAAGAA
AATCTAAACTTAGTTTTTttgttgaagaagaaaaacaatgtttttgtgtg
aatgatgaaaatgaagaaattgattcgaatcatcAAACACCAGTGGATGG
AGCACTTTACGAAGAATACGggcctAAAACAACAGTATGCATAAGGAAAA
ATCCATGTCCCAATCATCATGTTTGCATCGATGAATGTTATGGATCTTAC
AAATGTGTACCACCTCAACCATTACATGCTTTTGTCCAGACTGCTACTTC
ATCATCAGTCCTTCCTCCTGGTAATTCCATAGCTGCTAATGCTTTTGACG
GGCAAGAAACTGGAGCTTTTGAGACAGACAACAGAAATAGGGCGTCCCCT
CCGCACTGGATTCGAGCAACATTCCAGCTACGTCTTTTTATTGAGTACAT
AACAGTCGTCACTCGACCCGATTTATTAGGTACTCAATTTGAAGTACGAA
GCGATCTTACTGACTACTCCACCATTCTTCATATCAATGGACAAAGCATC
CAAACCAAGTTTGGTAATACTGGACGAATCGTAGGAGGTCGTGTAACTTT
AATTTGCCAAAAATATGCTGACGAGTTGTTTGGCTATCAACCAGTTGCAC
AAGGACCTTACGGAATAATGAGTCTTGCCGAAATTTGGATTTATGGTCGT
CCAGAATGAGTTGGTGCTCCATTTCTCATTCCTGGGGGTCATtaggctac
acgtttttttataagaatacactttataagaatgttcatgatgaaaatgg
tcaaaaatttaacAATATTACCCTgatcatggaggtaataaagatagatg
gag Run BLAST on NCBI protein sequence of TCONS_00025863-protein >TCONS_00025863-protein ID=TCONS_00025863-protein|Name=TCONS_00025863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MHLYILLSKLVLVYSQWYIGKEKQHYTSSVDDTSKPVVATSPIECALKCQ
RKSKLSFFVEEEKQCFCVNDENEEIDSNHQTPVDGALYEEYGPKTTVCIR
KNPCPNHHVCIDECYGSYKCVPPQPLHAFVQTATSSSVLPPGNSIAANAF
DGQETGAFETDNRNRASPPHWIRATFQLRLFIEYITVVTRPDLLGTQFEV
RSDLTDYSTILHINGQSIQTKFGNTGRIVGGRVTLICQKYADELFGYQPV
AQGPYGIMSLAEIWIYGRPE Run BLAST on NCBI transcript from alignment at sc0000550:25667..28347+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025863 ID=TCONS_00025863|Name=TCONS_00025863|organism=Clytia hemisphaerica|type=transcript|length=2681bp|location=Sequence derived from alignment at sc0000550:25667..28347+ (Clytia hemisphaerica)
TTCATTTCATAGGATTAAAATAGCAAGTGTGATGAAAgtacaatttgatt
ttttgttattattcaAGAATTGTCCTTTCATTTTTGCCTtttgagtttga
aaaaaaaaaatttttctctcaaataTTATTGGAAGAATCATTTGCTTTGA
ATGtctgttaaaaattttttgagtttCGGCTAAGGAAAGTCCTACAATGC
ACCTATATATTTTACTGAGCAAATTGGTTTTGGTTTATTCCCAATGGTAT
ATTGGCAAAGAAAAACAACATTACACATCAAGTGTTGACGATACTTCGAA
ACCTGTTGTTGCAACCTCACCTATTGAATGTGCTCTGAAATGTCAAAGAA
AATCTAAACTTAGTTTTTttgttgaagaagaaaaacaatgtttttgtgtg
aatgatgaaaatgaagaaattgattcgaatcatcAAACACCAGTGGATGG
AGCACTTTACGAAGAATACGgggtaattttttatcattctattatttttc
agatctttttaagattttatagGATGATTTAAGAAGTAAAGACTATTCCA
AAAAATTGACAGTCTACacgttttgataaatttcttttgaagaaGAGAAG
ATGTGATTAAAAGTAATatcttgttgaaaagatattcttaagcggataat
ttcaaaacttctaatttttcaaaaatttcgaaaatgaagatgaaaaaaat
gattgaacTTCGCtataatttcaaacattttttcaaatcttcgaAGCACC
TCATGTAAACTCAGGTCGGTCTGGATCTGAGACTGTACCGAAAATCCATG
TAAAGAGGCCCTCTAAACGTGCAGACTGTCattttttggaacagacttta
gaTGAAAAGACCctatagagctttcaaatacATAAGTCAAAGTGGttagt
ggagtctctataactcgaacatacacagttcgagttatggatttttgagt
AAGGTTCacgaggcattgttaactgaagagactataaaacttgttcgagt
taaggagaaattcgagttatagaaattCAAGTTCAAGTGGCTCTACTGTA
TTATTCTTGCTAGAAAAAGACTACCTCAATAGATTTCATTCAAAcctaat
caaattttttttcagcctAAAACAACAGTATGCATAAGGAAAAATCCATG
TCCCAATCATCATGTTTGCATCGATGAATGTTATGGATCTTACAAATGTG
TACCACCTCGTAAGATTCTATTTTTCTCTAAAGGGCTACTTAGAttacac
aatatattggtgagcaatattcgacaatatagCTTTCGGACAGTAATGTG
CTGAATAAAATAAggtgctctattataaaaagggattttctttctgtaaa
aaattcccctatattgttggagtattacaaatcgagctgacaatattttg
cagacaccttttcaatatattgcccgaACTCAGCAATATATGTCCAATAT
ATTGTCTatctattgtgtagtgtatgttgCCCTTAAAGTCAAACGTCTAC
TAAGacggaagaaattttggcgggagtTTAACTGGCGAATGGCTGTAATA
GGTTTTTCagagagaatttaatttggcggatagtggaaaaaatatatttt
gacagGAACTTGAAAGTGGATTTCGAGTAATGATGTAAAACTCGCCGAAA
TTTCTTCCTAAATTTTAACAATAACCAAAAAAACGGGAGGAGCCGATGAA
ACAATGTGTTTAGcaacattttttattattttctaggAGACAACACATGT
TATAAtcttttataaacttttttcattcaaatagtgttctgatttctagg
aaacatTAATACTGTTAAGGTAAACAATACCGTAGCCTCCAATTGCCCCG
CGGGCCTTTTGGccttttttgtccgctttatcccactaaactcgatccaa
tcctgtttttgaaacatttttctattgtctaaaGTTGCGAAAAAAGAACT
GGGACGGCTTTAGTTggattaaaagaagaaaaaaatgcccGCCTGTTAac
tggtggctacggtcgaaaaggtgtattgtacTAAATTCTAAGCTGTATGT
AAAAATTCCAAATCAATTATAGCAATAACTATAATCTCTTTTAGAACCAT
TACATGCTTTTGTCCAGACTGCTACTTCATCATCAGTCCTTCCTCCTGGT
AATTCCATAGCTGCTAATGCTTTTGACGGGCAAGAAACTGGAGCTTTTGA
GACAGACAACAGAAATAGGGCGTCCCCTCCGCACTGGATTCGAGCAACAT
TCCAGCTACGTCTTTTTATTGAGTACATAACAGTCGTCACTCGACCCGAT
TTATTAGGTACTCAATTTGAAGTACGAAGCGATCTTACTGACTACTCCAC
CATTCTTCATATCAATGGACAAAGCATCCAAACCAAGTTTGGTAATACTG
GACGAATCGTAGGAGGTCGTGTAACTTTAATTTGCCAAAAATATGCTGAC
GAGTTGTTTGGCTATCAACCAGTTGCACAAGGACCTTACGGAATAATGAG
TCTTGCCGAAATTTGGATTTATGGTCGTCCAGAATGAGTTGGTGCTCCAT
TTCTCATTCCTGGGGGTCATtaggctacacgtttttttataagaatacac
tttataagaatgttcatgatgaaaatggtcaaaaatttaacAATATTACC
CTgatcatggaggtaataaagatagatggag Coding sequence (CDS) from alignment at sc0000550:25667..28347+ >TCONS_00025863 ID=TCONS_00025863|Name=TCONS_00025863|organism=Clytia hemisphaerica|type=CDS|length=2439bp|location=Sequence derived from alignment at sc0000550:25667..28347+ (Clytia hemisphaerica)
ATGCACCTATATATTTTACTGAGCAAATTGGTTTTGGTTTATTCCCAATG
GTATATTGGCAAAGAAAAACAACATTACACATCAAGTGTTGACGATACTT
CGAAACCTGTTGTTGCAACCTCACCTATTGAATGTGCTCTGAAATGTCAA
AGAAAATCTAAACTTAGTTTTTttgttgaagaagaaaaacaatgtttttg
tgtgaatgatgaaaatgaagaaattgattcgaatcatcAAACACCAGTGG
ATGGAGCACTTTACGAAGAATACGggcctAAAACAACAGTATGCATAAGG
AAAAATCCATGTCCCAATCATCATGTTTGCATCGATGAATGTTATGGATC
TTACAAATGTGTACCACCTCAACCATTACATGCTTTTGTCCAGACTGCTA
CTTCATCATCAGTCCTTCCTCCTGGTAATTCCATAGCTGCTAATGCTTTT
GACGGGCAAGAAACTGGAGCTTTTGAGACAGACAACAGAAATAGGGCGTC
CCCTCCGCACTGGATTCGAGCAACATTCCAGCTACGTCTTTTTATTGAGT
ACATAACAGTCGTCACTCGACCCGATTTATTAGGTACTCAATTTGAAGTA
CGAAGCGATCTTACTGACTACTCCACCATTCTTCATATCAATGGACAAAG
CATCCAAACCAAGTTTGGTAATACTGGACGAATCGTAGGAGGTCGTGTAA
CTTTAATTTGCCAAAAATATGCTGACGAGTTGTTTGGCTATCAACCAGTT
GCACAAGGACCTTACGGAATAATGAGTCTTGCCGAAATTTGGATTTATGG
TCGTCCAGAATGAATGCACCTATATATTTTACTGAGCAAATTGGTTTTGG
TTTATTCCCAATGGTATATTGGCAAAGAAAAACAACATTACACATCAAGT
GTTGACGATACTTCGAAACCTGTTGTTGCAACCTCACCTATTGAATGTGC
TCTGAAATGTCAAAGAAAATCTAAACTTAGTTTTTttgttgaagaagaaa
aacaatgtttttgtgtgaatgatgaaaatgaagaaattgattcgaatcat
cAAACACCAGTGGATGGAGCACTTTACGAAGAATACGggcctAAAACAAC
AGTATGCATAAGGAAAAATCCATGTCCCAATCATCATGTTTGCATCGATG
AATGTTATGGATCTTACAAATGTGTACCACCTCAACCATTACATGCTTTT
GTCCAGACTGCTACTTCATCATCAGTCCTTCCTCCTGGTAATTCCATAGC
TGCTAATGCTTTTGACGGGCAAGAAACTGGAGCTTTTGAGACAGACAACA
GAAATAGGGCGTCCCCTCCGCACTGGATTCGAGCAACATTCCAGCTACGT
CTTTTTATTGAGTACATAACAGTCGTCACTCGACCCGATTTATTAGGTAC
TCAATTTGAAGTACGAAGCGATCTTACTGACTACTCCACCATTCTTCATA
TCAATGGACAAAGCATCCAAACCAAGTTTGGTAATACTGGACGAATCGTA
GGAGGTCGTGTAACTTTAATTTGCCAAAAATATGCTGACGAGTTGTTTGG
CTATCAACCAGTTGCACAAGGACCTTACGGAATAATGAGTCTTGCCGAAA
TTTGGATTTATGGTCGTCCAGAATGAATGCACCTATATATTTTACTGAGC
AAATTGGTTTTGGTTTATTCCCAATGGTATATTGGCAAAGAAAAACAACA
TTACACATCAAGTGTTGACGATACTTCGAAACCTGTTGTTGCAACCTCAC
CTATTGAATGTGCTCTGAAATGTCAAAGAAAATCTAAACTTAGTTTTTtt
gttgaagaagaaaaacaatgtttttgtgtgaatgatgaaaatgaagaaat
tgattcgaatcatcAAACACCAGTGGATGGAGCACTTTACGAAGAATACG
ggcctAAAACAACAGTATGCATAAGGAAAAATCCATGTCCCAATCATCAT
GTTTGCATCGATGAATGTTATGGATCTTACAAATGTGTACCACCTCAACC
ATTACATGCTTTTGTCCAGACTGCTACTTCATCATCAGTCCTTCCTCCTG
GTAATTCCATAGCTGCTAATGCTTTTGACGGGCAAGAAACTGGAGCTTTT
GAGACAGACAACAGAAATAGGGCGTCCCCTCCGCACTGGATTCGAGCAAC
ATTCCAGCTACGTCTTTTTATTGAGTACATAACAGTCGTCACTCGACCCG
ATTTATTAGGTACTCAATTTGAAGTACGAAGCGATCTTACTGACTACTCC
ACCATTCTTCATATCAATGGACAAAGCATCCAAACCAAGTTTGGTAATAC
TGGACGAATCGTAGGAGGTCGTGTAACTTTAATTTGCCAAAAATATGCTG
ACGAGTTGTTTGGCTATCAACCAGTTGCACAAGGACCTTACGGAATAATG
AGTCTTGCCGAAATTTGGATTTATGGTCGTCCAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025863-exon-sc0000550-1491911889:25667..26138 | TCONS_00025863-exon-sc0000550-1491911889:25667..26138 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1510915933:25667..26138 | TCONS_00025863-exon-sc0000550-1510915933:25667..26138 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1575043694:25667..26138 | TCONS_00025863-exon-sc0000550-1575043694:25667..26138 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1491911889:26782..26875 | TCONS_00025863-exon-sc0000550-1491911889:26782..26875 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1510915933:26782..26875 | TCONS_00025863-exon-sc0000550-1510915933:26782..26875 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1575043694:26782..26875 | TCONS_00025863-exon-sc0000550-1575043694:26782..26875 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1491911889:27761..28347 | TCONS_00025863-exon-sc0000550-1491911889:27761..28347 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1510915933:27761..28347 | TCONS_00025863-exon-sc0000550-1510915933:27761..28347 | Clytia hemisphaerica | exon |
| TCONS_00025863-exon-sc0000550-1575043694:27761..28347 | TCONS_00025863-exon-sc0000550-1575043694:27761..28347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:25667..28347 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008979 | Galactose-bd-like |
Blast
The following BLAST results are available for this feature:
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