TCONS_00025924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025924
Unique NameTCONS_00025924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025924 ID=TCONS_00025924|Name=TCONS_00025924|organism=Clytia hemisphaerica|type=transcript|length=1320bp
ttagatgaATGAGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGA
TTCGACCGTATGTCAACAAAAGTCAGTTGAAGGATATTGCATTGAAATGT
TTTGGCTTCGAACTGGATGAAGGAGTTGAACCGGTGGAAATGGTATCTTA
TGATGATAGAAACTTTAGAATTCAAGGGAGATGTATAGGCGAAAAAGTTT
CAAGATGTTTTgtgatgaaaatatttaacaggGGAACTTCAAATAAAGAC
ATTTTGGAACATATTATCAATTTGATTTTATATAGCAAATCTAAATGCTC
TCAACATTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACC
AAAATATGAAATACATCTCATCCTATGATATCACAATTCTTCCAAACGCA
TCATATGATAATTGTACTAAATCAAgtttgattgaaaaaggattactTCA
TATTGGTCCAATAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGA
CTTATCTTGAAGGAAGAGCTCCcaatttttatgaagaaaaagtGACAGAT
GAGTTTGCTCGAGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGTGTT
AGAGGAGGTTCCAAAATCAGAGAGTGTTGACCGAGAGAAATCATATTGCA
ATTTAATCACCGTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTT
AAGGAtgccaaacaaaaacaaactttcacGGACATCATTGAGAAATTCGA
AACACAGATCTTACCTCAACTTGAAAAGAATGTCAAGAAATCTTACATTC
ATGGTGATATAAATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAGTT
GGTGGCGTTATTGACTTTGATGATGCTGTTTGGTCTTTTCCAATCGTTGA
CTTAGCTACCTCTTTGATGCATTTATCCTTGACTCTGGACGAAAATGAAT
TCACTCATAAAATGAGAAAACTTTACCAAGGATATACATCTGTTCGTCAA
ATCACTGATTTAGAGAGAGACTTACTTTATGATATAACTTTGATGAGATA
TGCTCAATGTACAGTTTTAGCACGTTATCAATACCACGTGTTAGACCCTG
GCAATAAGTATCttcttaattttcttcaaaaaaattggcaagggttaagt
tttttgcttttaaTAGGGAAGGAtatgtttttagaaaaaatatgtactta
aaAATAAGCAGTGGGTTaattttcaattgattttgtttcatttctttGTA
TATCAGCGTCTTTTTTATAGTAAGCTTTTTATGAAGAACTCCGagaaaaa
gtataaatttttgaaaaata
Run BLAST on NCBI

transcript from alignment at sc0000555:102520..105900+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025924 ID=TCONS_00025924|Name=TCONS_00025924|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at sc0000555:102520..105900+ (Clytia hemisphaerica)
ttagatgaATGAGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGA
TTCGACCGTATGTCAACAAAAGTCAGTTGAAGGATATTGCATTGAAATGT
TTTGGCTTCGAACTGGATGAAGGAGTTGAACCGGTGGAAATGGTATCTTA
TGATGATAGAAACTTTAGAATTCAAGGTATTGCAAGCATGAttctcattt
tattttttttctgaatttctaGCTGAATTAACAAGACTTTGGCAACAAAA
ATATGATATCAACAAGGATTTTTTTAATAGCAGTCCTTTTCATGGTCGAA
ATAAATCATGTGAGTAATTAGGACTGATTGACTATTTTTGACAAAAGTGT
TATCCAAGCGTGTTGGTCttgattatttttatatgaCTATCATTGTATTT
TTTGTAGCGAGAATGGGGCTTGGGCCTGATGTTACTTAAATATATGGATA
GATAGAGACCCCTGATTCCTTTcgactaccttaagggaagaaattttcgt
gagaagaaattttcgcggaatttaatgtCGCGAATtggggcgtaattcgc
gaaattaaattccgcgaaacacaccaaaattgttaaatctcgcgaaaatt
tcttcccttaaggtatgtgaaatggcctatacgACACTTAGGGAAAAGGA
GGATGCAAGAAGTTCGTACTAATCTATTCTCTTCTAAAAATTCTTGCAAA
TAAACGTACTTCATTTTGATAttcgaaaatttaatttttaaagggcACAA
TATATTGGTAAACAACATTCCACAAAATGGCTAGGGAACCGTAATGTACG
ATGTTAATACCTTTAAGAGTTGACATTTTGGCAGtaagaaaattaaattc
ccgccaaagccttccaccaaattaaattcctgctaACATTTCTTCCCTTT
AGGTAACAGGTATACCAATAAAAACaggattttctttctgtaaGCAATAT
TGCAAACATCTTTTCTTTACAAAATATTGCCGGTACTCGCCAATAGATTA
TCTGATAATATATTGATTAGTGTACAGTATGTAGCTCTTTACTTGGTGAT
TTTCAAATATGTATTTCACTGTATCCttatattaaattattttttatgtt
ttttttatcttattttacaGGGAGATGTATAGGCGAAAAAGTTTCAAGAT
GTTTTgtgatgaaaatatttaacaggGGAACTTCAAATAAAGACATTTTG
GAACATATTATCAATTTGATTTTATATAGCAAATCTAAATGCTCTCAACA
TTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACCAAAATA
TGAAATACATCTCATCCTATGATATCACAATTCTTCCAAACGCATCATAT
GATAATTGTACTAAATCAAgtttgattgaaaaaggattactTCATATTGG
TCCAATAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGACTTATC
TTGAAGGAAGAGCTCCcaatttttatgaagaaaaagtGACAGATGAGTTT
GCTCGAGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGTGTTAGAGGT
ATGATCCTTTAATCGTATatcataaaataaataataaaaaaatattaatg
taTATTAATACATACCAGCCATTCCTGGCCATTCCGGTCTCGTCCAAAAC
GACTCTGctacaatacacctttttccgGTTAGCTGCTTCGTATAAAAAGT
cgccaaaatttcgagtaaacaaaccattCCATTGgctaaggcgagaccaa
tttaatttattgttctacgacCCAACCCAACCTGTTcttgccaaaaagaa
aaaaataataatatatgCATTTTAATTCTAAACCACTtgttaacttttga
aaaaagaaagtattatcTAACTTCTGAACGAATATTTACCGACTCCAATT
TATCAATCAATTAACCCAGTTTAATCAACGTCTGAGACATTTAGACTTAG
ATTTTCGGTAATCGAAAGCAAGGGTAAAGGGTTTTCTTTAGTATTTGTTT
TACCGACCCTTAAATtcgaaattattatttttattatcccgaccgaccga
cccatatttgtTTTAccatctgcccgtagaacaataaattaaattggtct
cgcctaaaagcaaaaacatgaACAAAAAAATGTGCAGAGTATGAGAAAAA
TGTGCTTTCTGTGTTCTTACTCTGGACATTTTTTTGTTAATCTGTTTGAT
TCTAGCCAATGAGATGGcttgtttactcgaaattttggtgactttttata
cgaagcAGCTAACCGGAAAAAGGTGTACTGCAATAAGTTTTTCTCGATTC
GCTTGCGTTAAATGTGCAAAagtgtttaaaagttttatgtCAAAATAGAG
GTTTGAAATTAAAAGCAAAACCAGGGGATGCAAAATCGGAATGTCCACGT
TGAGATCTTTGAAAAATAGAATATTCACCACCTCAGGAGCCTAAATAGTT
CATTATTATTTAACGATCCTGAAAATTCAAATGTCTCTTTCAcacgaaaa
acttttttggtcCATTTAGGTGATAAACCTTCATAGTTTATAaactctct
ataactcgaattttaGGGTCTTTATTCGCACAAAGGACAATTTTTTAACT
GATTTTCCATAAGAATGCTAAATTATGCTTAtccttttaaattttaatta
taTTTATTGTTTTAGGAGGTTCCAAAATCAGAGAGTGTTGACCGAGAGAA
ATCATATTGCAATTTAATCACCGTtgggaaatatttgaaatccaCTTATC
TAGAAGCCGTTAAGGAtgccaaacaaaaacaaactttcacGGACATCATT
GAGAAATTCGAAACACAGATCTTACCTCAACTTGAAAAGAATGTCAAGAA
ATCTTACATTCATGGTGATATAAATGAAGTAAACCTTCTACTAGACTCAA
GTGGAAAAGTTGGTGGCGTTATTGACTTTGATGATGCTGTTTGGTCTTTT
CCAATCGTTGACTTAGCTACCTCTTTGATGCATTTATCCTTGACTCTGGA
CGAAAATGAATTCACTCATAAAATGAGAAAACTTTACCAAGGATATACAT
CTGTTCGTCAAATCACTGATTTAGAGAGAGACTTACTTTATGATATAACT
TTGATGAGATATGCTCAATGTACAGTTTTAGCACGTTATCAATACCACGT
GTTAGACCCTGGCAATAAGTATCttcttaattttcttcaaaaaaattggc
aagggttaagttttttgcttttaaTAGGGAAGGAtatgtttttagaaaaa
atatgtacttaaaAATAAGCAGTGGGTTaattttcaattgattttgtttc
atttctttGTATATCAGCGTCTTTTTTATAGTAAGCTTTTTATGAAGAAC
TCCGagaaaaagtataaatttttgaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014576XLOC_014576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025924-exon-sc0000555-1491911889:102520..102695TCONS_00025924-exon-sc0000555-1491911889:102520..102695Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1510915933:102520..102695TCONS_00025924-exon-sc0000555-1510915933:102520..102695Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1575043694:102520..102695TCONS_00025924-exon-sc0000555-1575043694:102520..102695Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1491911889:103640..104067TCONS_00025924-exon-sc0000555-1491911889:103640..104067Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1510915933:103640..104067TCONS_00025924-exon-sc0000555-1510915933:103640..104067Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1575043694:103640..104067TCONS_00025924-exon-sc0000555-1575043694:103640..104067Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1491911889:105185..105900TCONS_00025924-exon-sc0000555-1491911889:105185..105900Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1510915933:105185..105900TCONS_00025924-exon-sc0000555-1510915933:105185..105900Clytia hemisphaericaexon
TCONS_00025924-exon-sc0000555-1575043694:105185..105900TCONS_00025924-exon-sc0000555-1575043694:105185..105900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:102520..105900 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3122	2.43487	1.24601	1.14015	0	0	0	0	7.5111	5.18198	3.77309	4.29101	4.71283	3.45735	8.1975	7.031	5.60642	4.61455	3.11054	4.07009	5.64137	5.03825	7.03363	7.30172	0.13851	0.160158	2.5525	2.27154	2.62687	1.47753
Blast
[Close]
BLAST of TCONS_00025924 vs. Swiss-Prot (Human)
Match: HYKK (Hydroxylysine kinase OS=Homo sapiens GN=HYKK PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.095e-18
Identity = 90/399 (22.56%), Postives = 175/399 (43.86%), Query Frame = 2 
Query:    8 NEKQSIALVNDQLKIRPYVNKSQLKDIALKCFGFELDEGVEPVEMVSYDDRNFRIQGRCIGEKVSRCFVMKIFN-RGTSNKDILEHIINLILYSKSKCSQHFAVQTPIPSISSSDQNMKYISSYDITILPNASYDNCTKSSLIEKGLLHIGPIGQTTCCHNIRLLTYLEGRAPNFYEEKVTDEFARDWGATSGRLCNVLEEV--PKSESVDREKSYCNLITVGKYLKSTYLEAVKDAKQKQTFTDIIEKFETQILPQLEKNVKKSYIHGDINEVNLLLDSSG--------KVGGVIDFDDAVWSFPIVDLATSLMHLSLTLDENEFTHKMRKLYQGYTSVRQITDLERDLLYDITLMRYAQCTVLARYQYHVLDPGNKYLLNFLQKNWQGLSFLLLIGK 1171
            N +QS AL       +P  ++ Q   +    FG ++ + V P+   SYDD+NF +      +  +  +V+KI N + + N D++E   ++I++ K       A   P  S+  +                    DN      ++ G             + +RLLTYL GR     E  V+ +   + G  + +L   L+    PK  S+ RE    NL  V   L   YL A+   + ++    +I  F+ +++ +L  + ++   HGD+N+ N+L++SS         +V G++DF D  + + + ++A ++M++   ++          +  G+ S+  +T +E+  L+ +   R+ Q  V+A Y   +      YL+   +  W+ L  +  +G+
Sbjct:    5 NYQQSEALS------KPTFSEEQASALVESVFGLKVSK-VRPLP--SYDDQNFHVYVSKTKDGPTE-YVLKISNTKASKNPDLIEVQNHIIMFLK-------AAGFPTASVCHTKG------------------DNTASLVSVDSG--------SEIKSYLVRLLTYLPGRP--IAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVP--LLEKYLYALGQNRNREIVEHVIHLFKEEVMTKL-SHFRECINHGDLNDHNILIESSKSASGNAEYQVSGILDFGDMSYGYYVFEVAITIMYM--MIESKSPIQVGGHVLAGFESITPLTAVEKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQ 353
The following BLAST results are available for this feature:
BLAST of TCONS_00025924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HYKK2.095e-1822.56Hydroxylysine kinase OS=Homo sapiens GN=HYKK PE=1 ... [more]
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