TCONS_00025937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025937
Unique NameTCONS_00025937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025937 ID=TCONS_00025937|Name=TCONS_00025937|organism=Clytia hemisphaerica|type=transcript|length=1775bp
gtttaaaccgtaatttattgaatatttaggataaaataagcattttaaac
tcaggcaacttttttctaaagcctttgttagaatacaatggCTATTCAAA
NNTTAccatcagcatgaaaatattaGCAATCTGATCggctaaaaacgcgt
acataaatgtTTATGAAATGATGTTCCCTAgtttttttgcatgaaactct
taccaaaatttaatgaaagaaaatgaaagaaaattctCAGCCCTTGTTCT
AAAGATAAGATATGCAATTTCCTTTAAAATACGTgcaaatattttctttt
gaaatacaAAACTTGGTTTGGTCAAACACAAACAACGTTAGTGAAAAGTG
TGAATAATTACAATGCTTATCATGTTTATctgttttttataaatatttat
CCCGTAGCTAAGTAGAAAATATGCGAAGCACATGGTGTTCTAAAGTAACT
TTAGAACACCATGGAAGCATAAATACAACAAGCTATTAATAGTTCATAGT
TTTTTTTGCCCTATTTCGGAGATGATCTTAGTATAGATTTTTACTAGAGT
AATATCAGTATCTTCAAGTTCGCGATATCCCAGTTTTTTGAATTGATAAT
TTCATCCACCATTTGCAGAGCCATCGGTCCATTGTCAGAGGGAACCATAT
GACCAGCATTCAAATTTTCATATGTTTTAATAAACTTGTGTATTCTTGCC
ACTTTCGGGTAGATAAATAGACTTGGTGTTGATTTGAATGTGGAAAGTTC
TGGCCATTTGACTTTATTGATCCATTTTTCTGCTCCTGGTGTATCGCTGA
TCATATCAAGTTGGCCTTGAAATACAACAACCTTAGTCATATTTGATTAG
CCGATCAACATAATCAATGACAGGTTTCATAAAATCAACGGATTGATATT
TATAAAGACATCACCAGATTGGGAACCCCATTCAACATTACTAGGAATTA
TTCCAAGTTTTTCTCGTACAGAACCATTCATGAAATCAGCAAGACTTTGT
TGTTGAAATCTCCCTACGTGTGTTTGTAAAGCCGTTGGAGATTTGGGCTC
AATTTTGGATAGGTTTCCTTCAGTGCAAAATCAGAGGGAACATGATGTCG
TAGAACATTATAGACATTCACATCATCAGTTTTTCACTGATAAGACTTTC
AGTCTCACCCCACAGTTCAGTTGCATAGGCAAACCTGCCAGCATTGACAG
CATCAATTGTGGCTTTGGAAATGTTGTTGACTTTATCTAAGTCAGCTTGA
TCAAGAAAATTGTATTGGTAGAGGTATAGTCCCCATGTTTCAACAGAATC
AACAGCTGAGATCCAAGAATCACCTAACGCAACTCCTGTCAAATTGCAAT
GAATTTGTCCTGCTTTTTGAGCTCTAAATAAAAGCTCCGCAAAGACTGAA
GTCATCTTTCCACCATATGACTCACAGAAAATATAAAATGGTGTTTCTGC
AAAGACTTCGAATTTCTCCATAAACACAGAAAGTACACGATACAAATCAT
CTGCAATTTCAGTAACATTTTTAGTGAACGCATCATCAGTGCTTGCATAG
CTAAATCCAGCGCCAACAGGGTTGTCAATAAAAAGCAAGTTAGCTTTTTT
AGTCCCAGCTGTGTCTCTTGGTTTGAGATTGGTGTCCACAGGtccaattt
ctttaaaattaccGTAACCAGCACCAGAGGCTCCAGGGCCACCTTGAAGC
CAAAGAATCAGTGGAAGATTTGCACGAGTTGCACTGTTTTCTGCACCAAA
AAACCACCAAAACATGTTTGCATTT
Run BLAST on NCBI

transcript from alignment at sc0000555:51727..53501-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025937 ID=TCONS_00025937|Name=TCONS_00025937|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at sc0000555:51727..53501- (Clytia hemisphaerica)
GTTTAAACCGTAATTTATTGAATATTTAGGATAAAATAAGCATTTTAAAC
TCAGGCAACTTTTTTCTAAAGCCTTTGTTAGAATACAATGGCTATTCAAA
NNTTACCATCAGCATGAAAATATTAGCAATCTGATCGGCTAAAAACGCGT
ACATAAATGTTTATGAAATGATGTTCCCTAGTTTTTTTGCATGAAACTCT
TACCAAAATTTAATGAAAGAAAATGAAAGAAAATTCTCAGCCCTTGTTCT
AAAGATAAGATATGCAATTTCCTTTAAAATACGTGCAAATATTTTCTTTT
GAAATACAAAACTTGGTTTGGTCAAACACAAACAACGTTAGTGAAAAGTG
TGAATAATTACAATGCTTATCATGTTTATCTGTTTTTTATAAATATTTAT
CCCGTAGCTAAGTAGAAAATATGCGAAGCACATGGTGTTCTAAAGTAACT
TTAGAACACCATGGAAGCATAAATACAACAAGCTATTAATAGTTCATAGT
TTTTTTTGCCCTATTTCGGAGATGATCTTAGTATAGATTTTTACTAGAGT
AATATCAGTATCTTCAAGTTCGCGATATCCCAGTTTTTTGAATTGATAAT
TTCATCCACCATTTGCAGAGCCATCGGTCCATTGTCAGAGGGAACCATAT
GACCAGCATTCAAATTTTCATATGTTTTAATAAACTTGTGTATTCTTGCC
ACTTTCGGGTAGATAAATAGACTTGGTGTTGATTTGAATGTGGAAAGTTC
TGGCCATTTGACTTTATTGATCCATTTTTCTGCTCCTGGTGTATCGCTGA
TCATATCAAGTTGGCCTTGAAATACAACAACCTTAGTCATATTTGATTAG
CCGATCAACATAATCAATGACAGGTTTCATAAAATCAACGGATTGATATT
TATAAAGACATCACCAGATTGGGAACCCCATTCAACATTACTAGGAATTA
TTCCAAGTTTTTCTCGTACAGAACCATTCATGAAATCAGCAAGACTTTGT
TGTTGAAATCTCCCTACGTGTGTTTGTAAAGCCGTTGGAGATTTGGGCTC
AATTTTGGATAGGTTTCCTTCAGTGCAAAATCAGAGGGAACATGATGTCG
TAGAACATTATAGACATTCACATCATCAGTTTTTCACTGATAAGACTTTC
AGTCTCACCCCACAGTTCAGTTGCATAGGCAAACCTGCCAGCATTGACAG
CATCAATTGTGGCTTTGGAAATGTTGTTGACTTTATCTAAGTCAGCTTGA
TCAAGAAAATTGTATTGGTAGAGGTATAGTCCCCATGTTTCAACAGAATC
AACAGCTGAGATCCAAGAATCACCTAACGCAACTCCTGTCAAATTGCAAT
GAATTTGTCCTGCTTTTTGAGCTCTAAATAAAAGCTCCGCAAAGACTGAA
GTCATCTTTCCACCATATGACTCACAGAAAATATAAAATGGTGTTTCTGC
AAAGACTTCGAATTTCTCCATAAACACAGAAAGTACACGATACAAATCAT
CTGCAATTTCAGTAACATTTTTAGTGAACGCATCATCAGTGCTTGCATAG
CTAAATCCAGCGCCAACAGGGTTGTCAATAAAAAGCAAGTTAGCTTTTTT
AGTCCCAGCTGTGTCTCTTGGTTTGAGATTGGTGTCCACAGGTCCAATTT
CTTTAAAATTACCGTAACCAGCACCAGAGGCTCCAGGGCCACCTTGAAGC
CAAAGAATCAGTGGAAGATTTGCACGAGTTGCACTGTTTTCTGCACCAAA
AAACCACCAAAACATGTTTGCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014588XLOC_014588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025937-exon-sc0000555-1575043694:51727..53501TCONS_00025937-exon-sc0000555-1575043694:51727..53501Clytia hemisphaericaexon
TCONS_00025937-exon-sc0000555-1510915933:51727..53501TCONS_00025937-exon-sc0000555-1510915933:51727..53501Clytia hemisphaericaexon
TCONS_00025937-exon-sc0000555-1491911889:51727..53501TCONS_00025937-exon-sc0000555-1491911889:51727..53501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:51727..53501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.52177	3.64897	1.9247	1.71983	1.95138	1.22727	4.2168	4.6819	3.73307	3.52863	2.12889	2.97103	1.99963	2.24883	4.24422	4.76103	2.7761	3.28961	2.48063	2.62259	4.93154	6.49182	3.11075	4.7861	1.91399	1.80671	2.38642	2.2432	2.21124	2.27259
Blast
[Close]
BLAST of TCONS_00025937 vs. Swiss-Prot (Human)
Match: RISC (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.728e-78
Identity = 108/229 (47.16%), Postives = 150/229 (65.50%), Query Frame = -2 
Query: 1091 NANMFWWFFGAENSATR-ANLPLILWLQXXXXXXXXXXGNFKEIGPVDTNLKPRDTAGTKKANLLFIDNPVGAGFSYASTDDAFTKNVTEIADDLYRVLSVFMEKFEVFAETPFYIFCESYGGKMTSVFAELLFRAQKAGQIHCNLTGVALGDSWISAVDSVETWGLYLYQYNFLDQADLDKVNNISKATIDAVNAGRFAYATELWGETESLISEKLMM*MSIMFYDIM 1774
            +A MFWW + A NS    + LPL++WLQGGPG S  G+GNF+EIGP+D++LKPR T   + A+LLF+DNPVG GFSY +   A+ K++  +A D+  +L  F    + F   PFYIF ESYGGKM +     L++A + G I CN  GVALGDSWIS VDSV +WG YLY  + L+   L +V+ +++  ++AVN G +  ATELWG+ E +I +       + FY+I+
Sbjct:   48 DAYMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNT---DGVNFYNIL 273

HSP 2 Score: 106.686 bits (265), Expect = 7.728e-78
Identity = 61/149 (40.94%), Postives = 85/149 (57.05%), Query Frame = -3 
Query:  607 LQTHVGRFQQQSLADFMNGSVREKLGIIPSNVEWGSQSGDVFXXXXXXXXXXXXXXXXIG*SNMTKVVVFQGQLDMISDTPGAEKWINKVKWPELSTFKST--PSLFIYPKVARIHKFIKTYEN------LNAGHMVPSDNGPMALQMV 1029
             Q HV   Q+ +L+  MNG +R+KL IIP +  WG Q+ +VF+N+    +  +  I+         V V+ GQLD+I DT G E W+ K+KWPEL  F      +L+  PK      F+K+Y+N      L AGHMVPSD G MAL+M+
Sbjct:  297 CQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMM 445
The following BLAST results are available for this feature:
BLAST of TCONS_00025937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RISC7.728e-7847.16Retinoid-inducible serine carboxypeptidase OS=Homo... [more]
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