TCONS_00025941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025941
Unique NameTCONS_00025941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025941 ID=TCONS_00025941|Name=TCONS_00025941|organism=Clytia hemisphaerica|type=transcript|length=2120bp
tttggaaatttaagaaaaactaGTACATGATTCTAATTGCAAAAATCATT
AAGTCatcttactcttaggttccaaataaacgggacAGTTCAAATAAAGG
GGGCGTTGAAAAATGTTCGAGATCTTAATAAACGGGGGCTAATTGCCAGA
GGGTTAtaaaaataaggggccttctctttgacagctgaaaatattcttaa
aaatttataaatgaaTAAAGTCCGAATAAGGTCCTGggggttagaaaatt
ttcgaaaaattaagaagcggggggggggcatttatttggaacctagAGTT
AAACTTGGATTAATCAAACAAACAATGTTAGTGAAAAGTTTGAGTAATTA
CAATGCTTATCATGTTTATCTGTGTTTATACATATTTATCACATAGCTTG
TGCCTATTATGACTACAACAAGCTATCTGGTTCTTTTAATTCTGATATTA
AAGTTCATTGTTTTTTACCAGATTTCAGAGTTGATCTTAGTTTTGATCTT
TACTAGAGTAATATCAGTATCTTCAAGTTCGCAATATCCCTTAAAAGTTT
TATGAATTGATAATTTCATCCACCATTTGCAGAGCCATCGGTCCATTGTC
AGAGGGAACCATATGACCAGCATTCATAATGTAATATAAGCTAAAATTCT
CATATGTTTTAACGAAAGCTTGTGTGTTCTTGCCACTTTCGGGTAGATAA
ATAGGCTTTCTTGGTGTTGATTTGAATGTGGAAAGTCCTGGCCATTTGAG
TTTATTGATCCATTTTTCTGCTCCTGGTGTATCACAAATCATATCAAGTT
GGCCTTGAAATACAACAACCTTAATTCCATAATTGATTAGCCGTTCAACA
TAATCAATGACAGGTTTCATAAAATCAACGGATTGATATTTAAAGACATC
ACCAGATTGGGAACCCCATTCAACATTACTAGGAATTATTCCAAGTTTTT
CTCGTACAGGACCATTCATGAAATCAGCAAGACTTTGTTGTTGAAATCTT
CCTACGTGTGTTTTGTAAAGCCGTTGGAGATTTGGGCTCAATTTTGAATA
GGTTTGCTTCAGTGCAAAATCAGAGGGAACATGATGTTGTAGAACATTAT
AGACATTCACATCATCAGTTGTTTCACTGATAAGACTTTCAGTCTCACCC
CATAGTTCAGTTGCATAGGCAAACCTGCCAGCATTGACAGCATCAATTGT
GGCTTTGGAAATGTTGTTGACTTTATCTAAGTCAGCTTGATCAAGAAGAT
TGTATTGGTAGAGGTATGGTCCCCATGTTTCAACAGAATCAACAGCTGAG
ATCCAAGAATCACCTAACGCAACTCCTTTCAAATTGCAATGAATTTGTCC
TGCTTTTTGAGCTCTAAATAAAAGCTCCGCAAAGACTGAAGTCATCTTTC
CACCATATGACTCACAGAAAATATAAAATGGTGTTTCTGCAAAGACTTCA
TATTTCTCCATAAACACAGAAAATACACGATATATACAAATCATCTGCAA
TTTCAGTAACATTTTTAGTGAACGCATCATCAGTGCTTGCATAGCTAAAT
CCAGCACCAACAGGGTTGTCAATAAAAAGCAAGTTAGCTTTTTTAGTCCA
AGCTGTGTCTCTTGGTTTGAGATTGGTGTCCACAGGTccaatttctttga
aattacCGTAACCAGCACCAGAGGCTCCAGGGCCACCTTGAAGCCAAAGA
ATTAGTGGAAGATTTGCACGAGTTGCACTGTTTTCTGCACCAAAAAACCA
CCAAAACATGTTTGCATTTTCCCGAACGTTAACATAACCCCAATCCTCAT
CTTTTATGCTTGAAGATCTTGGTGATCCATTGACCGGTATAGCAAGGAAC
AATAACAAGGTGagaaaaatcatcatttttaccATCAAACTCACAACTAG
TGAAAAACTCACACAAAACTTTCAGCGTATACTTCAAGAAAATGTAAATG
ATACCTTTTAAAAATAGGTTCGGTTTTGCAGCTGTCAAATATTGTGATTA
ATTGAACATCACATGAGTGATGATAGAGGAAagaaatacacctttcccgt
aattcgtaaaactaatgcgcgcgcattattttgatgctctccaccgtttg
gtctctggaggtaaacaaac
Run BLAST on NCBI

transcript from alignment at sc0000555:98986..101185-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025941 ID=TCONS_00025941|Name=TCONS_00025941|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at sc0000555:98986..101185- (Clytia hemisphaerica)
TTTGGAAATTTAAGAAAAACTAGTACATGATTCTAATTGCAAAAATCATT
AAGTCATCTTACTCTTAGGTTCCAAATAAACGGGACAGTTCAAATAAAGG
GGGCGTTGAAAAATGTTCGAGATCTTAATAAACGGGGGCTAATTGCCAGA
GGGTTATAAAAATAAGGGGCCTTCTCTTTGACAGCTGAAAATATTCTTAA
AAATTTATAAATGAATAAAGTCCGAATAAGGTCCTGGGGGTTAGAAAATT
TTCGAAAAATTAAGAAGCGGGGGGGGGGCATTTATTTGGAACCTAGAGTT
AAACTTGGATTAATCAAACAAACAATGTTAGTGAAAAGTTTGAGTAATTA
CAATGCTTATCATGTTTATCTGTGTTTATACATATTTATCACATAGCTTG
TGCCTATTATGACTACAACAAGCTATCTGGTTCTTTTAATTCTGATATTA
AAGTTCATTGTTTTTTACCAGATTTCAGAGTTGATCTTAGTTTTGATCTT
TACTAGAGTAATATCAGTATCTTCAAGTTCGCAATATCCCTTAAAAGTTT
TATGAATTGATAATTTCATCCACCATTTGCAGAGCCATCGGTCCATTGTC
AGAGGGAACCATATGACCAGCATTCATAATGTAATATAAGCTAAAATTCT
CATATGTTTTAACGAAAGCTTGTGTGTTCTTGCCACTTTCGGGTAGATAA
ATAGGCTTTCTTGGTGTTGATTTGAATGTGGAAAGTCCTGGCCATTTGAG
TTTATTGATCCATTTTTCTGCTCCTGGTGTATCACAAATCATATCAAGTT
GGCCTTGAAATACAACAACCTTAATTCCATAATTGATTAGCCGTTCAACA
TAATCAATGACAGGTTTCATAAAATCAACGGATTGATATTTAAAGACATC
ACCAGATTGGGAACCCCATTCAACATTACTAGGAATTATTCCAAGTTTTT
CTCGTACAGGACCATTCATGAAATCAGCAAGACTTTGTTGTTGAAATCTT
CCTACGTGTGTTTTGTAAAGCCGTTGGAGATTTGGGCTCAATTTTGAATA
GGTTTGCTTCAGTGCAAAATCAGAGGGAACATGATGTTGTAGAACATTAT
AGACATTCACATCATCAGTTGTTTCACTGATAAGACTTTCAGTCTCACCC
CATAGTTCAGTTGCATAGGCAAACCTGCCAGCATTGACAGCATCAATTGT
GGCTTTGGAAATGTTGTTGACTTTATCTAAGTCAGCTTGATCAAGAAGAT
TGTATTGGTAGAGGTATGGTCCCCATGTTTCAACAGAATCAACAGCTGAG
ATCCAAGAATCACCTAACGCAACTCCTTTCAAATTGCAATGAATTTGTCC
TGCTTTTTGAGCTCTAAATAAAAGCTCCGCAAAGACTGAAGTCATCTTTC
CACCATATGACTCACAGAAAATATAAAATGGTGTTTCTGCAAAGACTTCA
TATTTCTCCATAAACACAGAAAATACACGATATATACAAATCATCTGCAA
TTTCAGTAACATTTTTAGTGAACGCATCATCAGTGCTTGCATAGCTAAAT
CCAGCACCAACAGGGTTGTCAATAAAAAGCAAGTTAGCTTTTTTAGTCCA
AGCTGTGTCTCTTGGTTTGAGATTGGTGTCCACAGGTCCAATTTCTTTGA
AATTACCGTAACCAGCACCAGAGGCTCCAGGGCCACCTTGAAGCCAAAGA
ATTAGTGGAAGATTTGCACGAGTTGCACTGTTTTCTGCACCAAAAAACCA
CCAAAACATGTTTGCATTTTCCCGAACGTTAACATAACCCCAATCCTCAT
CTTTTATGCTTGAAGATCTTGGTGATCCATTGACCGGTATAGCAAGGAAC
AATAACAAGGTGAGAAAAATCATCNCTCATCTTTTATACTTGAAGATCTT
GGTGATCCATTGGCCGGTATAGCAAGGAACAACAACAAGGTGAGAAAAAT
CATCATTTTTACCATCAAACTCACAACTAGTGAAAAACTCACACAAAACT
TTCAGCGTATACTTCAAGAAAATGTAAATGATACCTTTTAAAAATAGGTT
CGGTTTTGCAGCTGTCAAATATTGTGATTAATTGAACATCACATGAGTGA
TGATAGAGGAAAGAAATACACCTTTCCCGTAATTCGTAAAACTAATGCGC
GCGCATTATTTTGATGCTCTCCACCGTTTGGTCTCTGGAGGTAAACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014588XLOC_014588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025941-exon-sc0000555-1575043694:99327..101185TCONS_00025941-exon-sc0000555-1575043694:99327..101185Clytia hemisphaericaexon
TCONS_00025941-exon-sc0000555-1575043694:98986..99246TCONS_00025941-exon-sc0000555-1575043694:98986..99246Clytia hemisphaericaexon
TCONS_00025941-exon-sc0000555-1510915933:99327..101185TCONS_00025941-exon-sc0000555-1510915933:99327..101185Clytia hemisphaericaexon
TCONS_00025941-exon-sc0000555-1510915933:98986..99246TCONS_00025941-exon-sc0000555-1510915933:98986..99246Clytia hemisphaericaexon
TCONS_00025941-exon-sc0000555-1491911889:99327..101185TCONS_00025941-exon-sc0000555-1491911889:99327..101185Clytia hemisphaericaexon
TCONS_00025941-exon-sc0000555-1491911889:98986..99246TCONS_00025941-exon-sc0000555-1491911889:98986..99246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:98986..101185 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.4828	16.6229	8.73174	6.67242	11.888	9.22458	11.0825	12.245	10.031	9.12448	9.89583	7.46241	7.3227	8.88844	9.85079	11.3674	7.9925	8.90352	10.4045	11.6767	12.5844	11.2271	11.3595	15.5412	11.0282	12.9311	8.234	5.96264	7.5798	5.6209
Blast
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BLAST of TCONS_00025941 vs. Swiss-Prot (Human)
Match: RISC (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.610e-103
Identity = 139/302 (46.03%), Postives = 188/302 (62.25%), Query Frame = -3 
Query:  571 VFSVFMEKYEVFAETPFYIFCESYGGKMTSVFAELLFRAQKAGQIHCNLKGVALGDSWISAVDSVETWGPYLYQYNLLDQADLDKVNNISKATIDAVNAGRFAYATELWGETESLISETTDDVNVYNVLQHHVPSDFALKQTYSKLSPNLQRLYKTHVGRFQQQSLADFMNGPVREKLGIIPSNVEWGSQSGDVFKYQSVDFMKPVIDYVERLINYGIKVVVFQGQLDMICDTPGAEKWINKLKWPGLSTFKSTPRKPIYLPESGKNTQAFVKTYENFSLYYIMNAGHMVPSDNGPMALQMV 1476
            +   F   ++ F   PFYIF ESYGGKM +     L++A + G I CN  GVALGDSWIS VDSV +WGPYLY  +LL+   L +V+ +++  ++AVN G +  ATELWG+ E +I + TD VN YN+L    P+   ++ +      +L  L + HV   Q+ +L+  MNGP+R+KL IIP +  WG Q+ +VF     DFMKPVI  V+ L+  GI V V+ GQLD+I DT G E W+ KLKWP L  F     K +Y       T AFVK+Y+N + Y+I+ AGHMVPSD G MAL+M+
Sbjct:  145 LLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTS-TMESSLEFTQSHLVCLCQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMM 445

HSP 2 Score: 110.923 bits (276), Expect = 1.610e-103
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = -2 
Query: 1481 EDWGYVNVRENANMFWWFFGAENSATR-ANLPLILWLQXXXXXXXXXXGNFKEIGPVDTNLKPRDTAWTKKANLLFIDNPVGAGFSYASTDDAFTKNVTEIADDLYI 1798
            E W YV VR++A MFWW + A NS    + LPL++WLQGGPG S  G+GNF+EIGP+D++LKPR T W + A+LLF+DNPVG GFSY +   A+ K++  +A D+ +
Sbjct:   38 EVWDYVTVRKDAYMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMV 144
The following BLAST results are available for this feature:
BLAST of TCONS_00025941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RISC1.610e-10346.03Retinoid-inducible serine carboxypeptidase OS=Homo... [more]
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