TCONS_00025948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025948
Unique NameTCONS_00025948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025948 ID=TCONS_00025948|Name=TCONS_00025948|organism=Clytia hemisphaerica|type=transcript|length=379bp
TTTATGCTTGAAGATCTTGGTGATCCATTGACCGGTATAGCAAGGAACAA
CAACAAGGTGagaaaaatcatcatttttaccATCAAACTCACAACTAGTG
AAAAACTCGCACAAAACTTTCAGCGTTATATACTTCAACAAAATGTAAAT
GATACCTTTTGAAAATAGGTACGGTTTTACAGCTGTCAAATATTGTTATT
AATTAAACATCACATGAGTGATGATAGAGGAAAGAAATCGATCAATAGAT
GCAGAGTTCATGAATCAGGGTCATCAGCAGAGAATCACATGATAATGAAA
GCGAAAATactttttgtttactttgtaggcGCGAGAACCACTTAGCGTCC
AGTCTTTTTTCCCGAACACGTTGCCGCAA
Run BLAST on NCBI

transcript from alignment at sc0000555:51278..51656

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025948 ID=TCONS_00025948|Name=TCONS_00025948|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0000555:51278..51656 (Clytia hemisphaerica)
TTGCGGCAACGTGTTCGGGAAAAAAGACTGGACGCTAAGTGGTTCTCGCg
cctacaaagtaaacaaaaagtATTTTCGCTTTCATTATCATGTGATTCTC
TGCTGATGACCCTGATTCATGAACTCTGCATCTATTGATCGATTTCTTTC
CTCTATCATCACTCATGTGATGTTTAATTAATAACAATATTTGACAGCTG
TAAAACCGTACCTATTTTCAAAAGGTATCATTTACATTTTGTTGAAGTAT
ATAACGCTGAAAGTTTTGTGCGAGTTTTTCACTAGTTGTGAGTTTGATgg
taaaaatgatgatttttctCACCTTGTTGTTGTTCCTTGCTATACCGGTC
AATGGATCACCAAGATCTTCAAGCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014594XLOC_014594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025948-exon-sc0000555-1491911889:51278..51656TCONS_00025948-exon-sc0000555-1491911889:51278..51656Clytia hemisphaericaexon
TCONS_00025948-exon-sc0000555-1510915933:51278..51656TCONS_00025948-exon-sc0000555-1510915933:51278..51656Clytia hemisphaericaexon
TCONS_00025948-exon-sc0000555-1575043694:51278..51656TCONS_00025948-exon-sc0000555-1575043694:51278..51656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:51278..51656 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.28487	8.90222	2.49412	2.00995	0	0	0	0	0.879306	1.77819	1.29304	1.38988	0.416385	1.16988	2.01454	1.66951	1.87998	0.802882	1.33107	1.85716	3.72412	5.41066	3.6474	4.37213	0	0	0.633663	0.958483	0.979547	0.978994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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